mRNA_E_fasciculatus_S2_contig9343.17399.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9343.17399.1
Unique NamemRNA_E_fasciculatus_S2_contig9343.17399.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9343.17399.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9343contigE_fasciculatus_S2_contig9343:2025..2570 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size546
Hectar predicted targeting categoryother localisation
Exons1
Cds size345
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842584.1732647-UTR-E_fasciculatus_S2_contig9343:2024..20941696842584.1732647-UTR-E_fasciculatus_S2_contig9343:2024..2094Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9343 2025..2094 +
1696842584.191226-UTR-E_fasciculatus_S2_contig9343:2439..25701696842584.191226-UTR-E_fasciculatus_S2_contig9343:2439..2570Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9343 2440..2570 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842584.1826844-CDS-E_fasciculatus_S2_contig9343:2094..24391696842584.1826844-CDS-E_fasciculatus_S2_contig9343:2094..2439Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9343 2095..2439 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9343.17399.1prot_E_fasciculatus_S2_contig9343.17399.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9343 2095..2439 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9343.17399.1

>prot_E_fasciculatus_S2_contig9343.17399.1 ID=prot_E_fasciculatus_S2_contig9343.17399.1|Name=mRNA_E_fasciculatus_S2_contig9343.17399.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=115bp
MLDAVGAAAVVVAVVGDAGPEAPAGAVDRVIVAPVPLVSVERPVGVAVLV
VGIVGFGVLAQGEGVRRVPRVGVGVGLELAVDPFFRSKLSLSWPVLPVVT
ATFCLFAPRSLRLR*
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mRNA from alignment at E_fasciculatus_S2_contig9343:2025..2570+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9343.17399.1 ID=mRNA_E_fasciculatus_S2_contig9343.17399.1|Name=mRNA_E_fasciculatus_S2_contig9343.17399.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=546bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9343:2025..2570+ (Ectocarpus fasciculatus EfasUO2)
GGTTGATGGAACTGGTGTTGAGGTTGTTGCACCCGGGGCAGTGGCTGTTG
CTGGTTTTGTTGGTATTGGTATGCTTGATGCGGTTGGGGCGGCAGCTGTT
GTGGTTGCTGTGGTTGGGGATGCTGGCCCGGAGGCGCCTGCTGGTGCGGT
TGATCGGGTGATTGTTGCTCCGGTGCCGCTTGTTTCGGTTGAGCGGCCGG
TTGGGGTTGCTGTTCTTGTTGTTGGTATTGTTGGTTTTGGAGTTCTTGCA
CAAGGAGAGGGAGTCCGGCGGGTGCCCCGTGTGGGGGTTGGGGTTGGTCT
TGAGCTTGCTGTTGATCCATTCTTCCGGTCCAAGTTGTCGCTGTCCTGGC
CGGTGCTGCCCGTTGTCACGGCGACCTTCTGCCTGTTCGCCCCTCGGTCT
CTTCGTCTTCGCTAACCCTGGTGGCTTCTGCAGAATCCTTCTCCCATCCA
GTTGTCTCTGCGCACCTCCTGTCTGACGGGTGTCTCGTTTCTGAGATGTA
CGTCGTTCCGTAGTGGTTGTTTCTCCCCCACTTATCTTTGTACGGG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9343:2025..2570+

>mRNA_E_fasciculatus_S2_contig9343.17399.1 ID=mRNA_E_fasciculatus_S2_contig9343.17399.1|Name=mRNA_E_fasciculatus_S2_contig9343.17399.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=345bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9343:2025..2570+ (Ectocarpus fasciculatus EfasUO2)
ATGCTTGATGCGGTTGGGGCGGCAGCTGTTGTGGTTGCTGTGGTTGGGGA
TGCTGGCCCGGAGGCGCCTGCTGGTGCGGTTGATCGGGTGATTGTTGCTC
CGGTGCCGCTTGTTTCGGTTGAGCGGCCGGTTGGGGTTGCTGTTCTTGTT
GTTGGTATTGTTGGTTTTGGAGTTCTTGCACAAGGAGAGGGAGTCCGGCG
GGTGCCCCGTGTGGGGGTTGGGGTTGGTCTTGAGCTTGCTGTTGATCCAT
TCTTCCGGTCCAAGTTGTCGCTGTCCTGGCCGGTGCTGCCCGTTGTCACG
GCGACCTTCTGCCTGTTCGCCCCTCGGTCTCTTCGTCTTCGCTAA
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