mRNA_E_fasciculatus_S2_contig9335.17393.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9335.17393.1
Unique NamemRNA_E_fasciculatus_S2_contig9335.17393.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig9335.17393.1 vs.
Match: Transcription (elongation factor SPT5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI29_ECTSI)

HSP 1 Score: 542 bits (1397), Expect = 4.730e-184
Identity = 283/296 (95.61%), Postives = 288/296 (97.30%), Query Frame = 1
Query:    4 LCLSVMNKALAFKANGQPFGVTSAIVPAGTKGFLYLEAQNEPAVKAAINGLRGIYHSKLRKVPIPDMTAVLSVRSATRAKPVRQNQFIRLKRKPYKDDLAKVVEVLAGGERAVVQFIPRIDLVSLSADAETRNARKSLRPPQRFFNPEEIKQASDEAMVDRRRFQGHGDHMDYFQNNFFLNGFVVKEVNVSTWLRADRVNPTLEEIQRFKSRREKKDPADGDDSDDERNRDAEEKETEIMEDLAMAQAMEPTNDAPLFSKGDTVVVVKGDLTDLMGRVLRVRQTGQSQVDAVVHIQ 891
            LCLSVMNKALAFKANGQPFGVTSA+VPAGTKGFLYLEAQNEPAVKAAINGLRGIYHSKLRKVPIPDMTAVLSVRSATRAKPVRQNQFIRLKRKPY DDLAKVVEVLAGGERAVVQFIPRIDLVSLSADAETRNARKSLRPPQRFFNPEEIKQASDEAMVDRRRFQGHGDHMDYFQNNFFLNGFVVKEVNVSTWLRADRVNPTLEEIQRFKSRREK+DP DG     ERNRDAE+K+TEIMEDLAMAQAMEPT+DAPLFSKGDTVVVVKGDLTDLMGRVLRVRQTGQSQ DAVVHIQ
Sbjct:  174 LCLSVMNKALAFKANGQPFGVTSAVVPAGTKGFLYLEAQNEPAVKAAINGLRGIYHSKLRKVPIPDMTAVLSVRSATRAKPVRQNQFIRLKRKPYTDDLAKVVEVLAGGERAVVQFIPRIDLVSLSADAETRNARKSLRPPQRFFNPEEIKQASDEAMVDRRRFQGHGDHMDYFQNNFFLNGFVVKEVNVSTWLRADRVNPTLEEIQRFKSRREKRDPGDGXXXXXERNRDAEDKDTEIMEDLAMAQAMEPTSDAPLFSKGDTVVVVKGDLTDLMGRVLRVRQTGQSQADAVVHIQ 469          
BLAST of mRNA_E_fasciculatus_S2_contig9335.17393.1 vs.
Match: Transcription (elongation factor SPT5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFI1_9PHAE)

HSP 1 Score: 508 bits (1309), Expect = 2.460e-173
Identity = 279/341 (81.82%), Postives = 285/341 (83.58%), Query Frame = 1
Query:    1 QLCLSVMNKALAFKANGQPFGVTSAIVPAGTKGFLYLEAQNEPAVKAAINGLRG------IYHSKLRKVPIPDMTAVLSVRSATRAKPVRQNQFIRLKRKPYKDDLAKVVEVLAGGERAVVQFIPRIDLVSLSADAETRNARKSLRPPQRFFNPEE--------------------------------------IKQASDEAMVDRRRFQGHGDHMDYFQNNFFLNGFVVKEVNVSTWLRADRVNPTLEEIQRFKSRREKKDPADGDDSDDERNRDAEEKETEIMEDLAMAQAMEPTNDAPLFSKGDTVVVVKGDLTDLMGRVLRVRQTGQSQVDAVVHIQ 891
            QLCLSVMNKALAFKANGQPFGVTSA+VPAGTKGFLYLEAQNEPAVKAAINGLRG      IYHSKLRKVPIPDMTAVLSVRSATRAKPVRQNQFIRLKRKPY DDLAKVVEVLAGGERAVVQFIPRIDLVSLSADAETRNARKS+RPPQRFFNPEE                                      IKQASDEAMV+RRRFQGHGDHMDYFQNNFFLNGFVVKEVNVSTWLRADRVNPTLEEIQRFKSRREK+DP         RNRDAE+KETEIMEDLAMAQAMEPT+DAPLFSKGDTVVV KGDLTDLMGRVLRVRQTGQSQ DAVVHIQ
Sbjct:   25 QLCLSVMNKALAFKANGQPFGVTSAVVPAGTKGFLYLEAQNEPAVKAAINGLRGVRGVCLIYHSKLRKVPIPDMTAVLSVRSATRAKPVRQNQFIRLKRKPYTDDLAKVVEVLAGGERAVVQFIPRIDLVSLSADAETRNARKSIRPPQRFFNPEESTTLLPLKMSLLFECDDTKPNQNDIRNEFRTDALRDDQIKQASDEAMVERRRFQGHGDHMDYFQNNFFLNGFVVKEVNVSTWLRADRVNPTLEEIQRFKSRREKRDPGXXXXXXXXRNRDAEDKETEIMEDLAMAQAMEPTSDAPLFSKGDTVVVAKGDLTDLMGRVLRVRQTGQSQADAVVHIQ 365          
BLAST of mRNA_E_fasciculatus_S2_contig9335.17393.1 vs.
Match: Transcription (elongation factor SPT5 n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X6Q6_9STRA)

HSP 1 Score: 172 bits (437), Expect = 8.550e-47
Identity = 115/280 (41.07%), Postives = 164/280 (58.57%), Query Frame = 1
Query:    4 LCLSVMNKALAFKANGQPFGVTSAIVPAGTKGFLYLEAQNEPAVKAAINGLRGIYHSKLRKVPIPDMTAVLSVRSATRAKPVRQNQFIRLKRKP-YKDDLAKVVEVLAGGERAVVQFIPRIDLVSLSADAETRNARKSLRPPQRFFNPEEIKQASDEAMVDRRRFQGHGDHMDYFQNNFFLNGFVVKEVNVSTWLRADRVNPTLEEIQRFKSRREKKDPADGDDSDDERNRDAEEKETEIMEDLAMAQAMEPTNDAPLFSKGDTVVVVKGDLTDLMGRVL 840
            L +++MNK + F   G+P  V S +V + +KGF+Y+EA+ EP  K  +NGLR +    ++ VPI +MT+VL+V+  TR KP+    + R+KR   YK DL KV+E+L  G RAVV+ IPR+D + L A  E    +K  RPPQ+ F+   +  A     V RRR+   G+ MD F N+F+  GF++KE+N++T L  + VNPTL+EI RF S         G+D            E    E LA  +A +  N   L +KGDTV V++GDL +LMG VL
Sbjct:  173 LVVALMNKFIEFARRGEPLMVKS-VVASNSKGFIYVEAEREPHAKDCLNGLRDVQQWSMKLVPIHEMTSVLNVQ--TRRKPLVAGAWARMKRAGLYKGDLCKVIEILDNGARAVVKMIPRLDPIVL-AGGEQPKYKKGQRPPQKLFHANMVPGAD----VARRRYPSTGEMMDTFDNDFYQEGFLIKELNIATMLTTEDVNPTLDEINRFSS-------VAGEDG-----------EHTAEEMLASVEADDWKNKVDL-TKGDTVRVIEGDLINLMGVVL 425          
BLAST of mRNA_E_fasciculatus_S2_contig9335.17393.1 vs.
Match: Uncharacterized (protein n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DSQ3_PHYNI)

HSP 1 Score: 172 bits (437), Expect = 7.000e-46
Identity = 115/280 (41.07%), Postives = 164/280 (58.57%), Query Frame = 1
Query:    4 LCLSVMNKALAFKANGQPFGVTSAIVPAGTKGFLYLEAQNEPAVKAAINGLRGIYHSKLRKVPIPDMTAVLSVRSATRAKPVRQNQFIRLKRKP-YKDDLAKVVEVLAGGERAVVQFIPRIDLVSLSADAETRNARKSLRPPQRFFNPEEIKQASDEAMVDRRRFQGHGDHMDYFQNNFFLNGFVVKEVNVSTWLRADRVNPTLEEIQRFKSRREKKDPADGDDSDDERNRDAEEKETEIMEDLAMAQAMEPTNDAPLFSKGDTVVVVKGDLTDLMGRVL 840
            L +++MNK + F   G+P  V S +V + +KGF+Y+EA+ EP  K  +NGLR +    ++ VPI +MT+VL+V+  TR KP+    + R+KR   YK DL KV+E+L  G RAVV+ IPR+D + L A  +    +K  RPPQ+ F+   +  A     V RRR+   G+ MD F N+F+  GF++KEVN++T L  + VNPTL+EI RF S         G+D            E    E LA  +A +  N   L +KGDTV V++GDL +LMG VL
Sbjct:  171 LVVALMNKFIEFARRGEPLMVKS-VVASNSKGFIYVEAEREPHAKDCLNGLRDVQQWSMKLVPIHEMTSVLNVQ--TRRKPLVAGAWARMKRAGLYKGDLCKVIEILDNGARAVVKMIPRLDPIVL-AGGDQPKYKKGQRPPQKLFHANMVPGAD----VARRRYPSTGEMMDTFDNDFYQEGFLIKEVNIATMLTTEDVNPTLDEINRFSS-------VAGEDG-----------EHTAEEMLASVEADDWKNKVDL-TKGDTVRVIEGDLINLMGVVL 423          
BLAST of mRNA_E_fasciculatus_S2_contig9335.17393.1 vs.
Match: Transcription (elongation factor SPT5 n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G376_PHATC)

HSP 1 Score: 174 bits (442), Expect = 2.020e-45
Identity = 112/293 (38.23%), Postives = 175/293 (59.73%), Query Frame = 1
Query:    1 QLCLSVMNKALAFKANGQPFGVTSAIVPAGTKGFLYLEAQNEPAVKAAINGLRGIYHSKLRKVPIPDMTAVLSVRSATRAKPVRQNQFIRLKRKPYKDDLAKVVEVLAGGERAVVQFIPRIDLVSLSAD-AETRNARKSLRPPQRFFNPEEIKQASDEAMVDRRRFQGHGDHMDYFQNNFFLNGFVVKEVNVSTWLRA--DRVNPTLEEIQRFKSRREKKDPADGDDSDDERNRDAEEKETEIMEDLAMAQAME-----PTNDAPLFSKGDTVVVVKGDLTDLMGRVLRVRQT 855
            +L   +MNK +A    G+P G++SAI  A +KG +YLE+ +EPAV  AI G+RG+    +R VPI DMT V++V S  R KPV++N+++R+ R  YK DLA V +V   G + VVQ +PR+DL       AE R  RK++RPPQ+FFNP+EI       +  R+RF G   + DYF  N++ +G+++KE+ V + ++A  D   PTL+E+QRF+ R+ K++  DG D ++     A      ++++L+  Q         T        GDT+ V++GDL  + G+++ +  T
Sbjct:  223 ELVCQIMNKCVAMARQGRPVGISSAIA-AQSKGKIYLESFSEPAVVDAIQGVRGLLQYTMRLVPIGDMTTVMTVTS--RKKPVQKNEWVRMTRGHYKHDLALVKDVKESGLKCVVQCVPRLDLTLADLPPAEARMRRKTVRPPQKFFNPQEIAALGRHGLT-RQRFPGLNLYCDYFDGNYYHDGYLLKEMTVGSMIKACTDEDPPTLDELQRFQRRQSKQNEEDGGDENEGSKMAA-----SLLDELSDLQGRTGLGKTKTGGGGGLLIGDTIEVIEGDLIGMRGKLVSLDGT 506          
BLAST of mRNA_E_fasciculatus_S2_contig9335.17393.1 vs.
Match: Transcription (elongation factor SPT5 n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WE80_9STRA)

HSP 1 Score: 174 bits (441), Expect = 2.830e-45
Identity = 114/280 (40.71%), Postives = 164/280 (58.57%), Query Frame = 1
Query:    4 LCLSVMNKALAFKANGQPFGVTSAIVPAGTKGFLYLEAQNEPAVKAAINGLRGIYHSKLRKVPIPDMTAVLSVRSATRAKPVRQNQFIRLKRKP-YKDDLAKVVEVLAGGERAVVQFIPRIDLVSLSADAETRNARKSLRPPQRFFNPEEIKQASDEAMVDRRRFQGHGDHMDYFQNNFFLNGFVVKEVNVSTWLRADRVNPTLEEIQRFKSRREKKDPADGDDSDDERNRDAEEKETEIMEDLAMAQAMEPTNDAPLFSKGDTVVVVKGDLTDLMGRVL 840
            L +++MNK L F   G+P  V S +V + +KGF+Y+EA+ EP  K A+NGLR +    ++ VPI +MT+VL+V+   R KP+    + R+KR   YK DL KVVE+L  G RAVV+ IPR+D + L A  E    +K  RPPQ+ F+   +  A     V RRR+   G+ MD F N+F+ +GF++KEV+++T L  D VNPTL+EI RF S       A G+D +               ED+  +   +   +    +KGDTV V++GDL +LMG VL
Sbjct:  173 LVVALMNKFLEFARRGEPLMVKS-VVASNSKGFIYVEAEREPHAKDALNGLRDVQQWSMKLVPIHEMTSVLTVQK--RRKPLVAGAWARMKRAGIYKADLCKVVEILDNGARAVVKMIPRLDPIVL-AGGEQPKYKKGQRPPQKIFHSNMVPGAD----VIRRRYPSTGEMMDSFDNDFYQDGFLIKEVSIATMLLTDDVNPTLDEINRFSS-------ATGEDGE------------HSAEDMLASVESDDWKNKVELTKGDTVRVIEGDLINLMGVVL 425          
BLAST of mRNA_E_fasciculatus_S2_contig9335.17393.1 vs.
Match: Hypothetical (protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QHX5_9STRA)

HSP 1 Score: 169 bits (429), Expect = 4.860e-45
Identity = 111/291 (38.14%), Postives = 181/291 (62.20%), Query Frame = 1
Query:    4 LCLSVMNKALAFKANGQPFGVTSAIVPAGTKGFLYLEAQNEPAVKAAINGLRGIYHSKLRKVPIPDMTAVLSVRSATRAKPVRQNQFIRLKRKPYKDDLAKVVEVLAGGERAVVQFIPRIDL-VSLSADAETRNARKSLRPPQRFFNPEEIKQASDEAMVDRRRFQGHGDHMDYFQNNFFLNGFVVKEVNVSTWLR--ADRVNPTLEEIQRFKSR--REKKDPADGDDSDDERNRDAEEKETEIMEDLAMAQA-----MEP--TNDAPLFSKGDTVVVVKGDLTDLMGRVL 840
            L + +MNK ++F   G+P G+TSA+  A +KG +Y+E+ +EPAV+ AI G+RG+    +R VPI DMT V++V+S  + KPV++++++R+ R  +K DLA V  V   G + V+Q +PRIDL +S     E R  R++++PPQ+FFN +EI  A  +  V R+RF G   + D F+  ++ +G+++KEV V T ++   +   PTL+E+QRF++R    K+   DGDD + E   +  +    ++++L+  Q      ME   +N A L   GDTV +V+GDL  + G++L
Sbjct:  185 LVIQIMNKCVSFARQGKPLGITSAVA-AQSKGRVYVESYSEPAVREAITGIRGLMAYSMRLVPIRDMTTVMTVKS--KKKPVKKSEWVRMSRGQFKGDLALVKMVRESGTKCVIQCVPRIDLTLSELTPEEARIRRRTVKPPQKFFNAQEIA-ALGKLSVTRQRFPGLDTYCDVFEGCYYHDGYMLKEVTVGTMVKPCGEDEPPTLDELQRFRNRSANNKESDDDGDDYEGEDENEGSKIAKSLLDELSELQGKPSLGMEGRGSNSAGLVI-GDTVEIVEGDLVGMRGKLL 470          
BLAST of mRNA_E_fasciculatus_S2_contig9335.17393.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZDV4_9STRA)

HSP 1 Score: 169 bits (428), Expect = 1.370e-44
Identity = 112/313 (35.78%), Postives = 183/313 (58.47%), Query Frame = 1
Query:    1 QLCLSVMNKALAFKANGQPFGVTSAIVPAGTKGFLYLEAQNEPAVKAAINGLRGIYHSKLRKVPIPDMTAVLSVRSATRAKPVRQNQFIRLKRKPYKDDLAKVVEVLAGGERAVVQFIPRIDL-VSLSADAETRNARKSLRPPQRFFNPEEIKQASDEAMVDRRRFQGHGD-HMDYFQNNFFLNGFVVKEVNVSTWLR--ADRVNPTLEEIQRFKSRREKKDPADGDDSDDERNRDAEEKETEIMEDLAMAQ----AMEPTNDAPLFSKGDTVVVVKGDLTDLMGRVL-------RVRQTGQSQVDAVVHIQY 894
            +L   +MNK++AF   G+P G+T A+  A +KG +Y+E+ +EPAV  A+ G+R +    +R VPI DMT V++V    + KPV++N ++R+ R  YK DLA V  V  GG + ++Q +PRIDL +S     E R  R+++RPPQ+FFNP+EI      ++  R+RF G GD + DYF  N++ +G+++KEV V T ++   +   PTL+E+Q F  RR+KK   + DD  +E      +    ++++L+  Q    A    +       GDTV VV+GDL  + G+++       +V+ T  + +  V  +++
Sbjct:  192 ELVYQIMNKSIAFARQGKPLGITGAVA-AQSKGRIYVESYSEPAVIEAVEGIRNMMQYSMRLVPISDMTTVMTV--VPKKKPVKKNDWVRMSRSHYKGDLALVKAVRDGGLKCIIQCVPRIDLTLSDLPPEEARVRRRTVRPPQKFFNPQEIAALGKHSL--RQRFPGLGDIYCDYFDGNYYHDGYLLKEVTVGTMVKPCGEDDPPTLDELQTF--RRKKKGDQEYDDEGEENE--GSKMAASLLDELSELQTGISAKGGGSGGGGLIIGDTVEVVEGDLVGMRGKLMSIDGTTVKVKPTNAADIGDVAEVEF 495          
BLAST of mRNA_E_fasciculatus_S2_contig9335.17393.1 vs.
Match: Transcription (elongation factor SPT5 n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UHW9_9STRA)

HSP 1 Score: 172 bits (435), Expect = 1.640e-44
Identity = 111/294 (37.76%), Postives = 175/294 (59.52%), Query Frame = 1
Query:    1 QLCLSVMNKALAFKANGQPFGVTSAIVPAGTKGFLYLEAQNEPAVKAAINGLRGIYHSKLRKVPIPDMTAVLSVRSATRAKPVRQNQFIRLKRKPYKDDLAKVVEVLAGGERAVVQFIPRIDLVSLSADAE-TRNARKSLRPPQRFFNPEEIKQASDEAMVDRRRFQGHGD-HMDYFQNNFFLNGFVVKEVNVSTWLR--ADRVNPTLEEIQRFKSRREKKDPADGDDSDDERNRDAEEKETEIMEDLAMAQAMEPTNDAPLFSKG-----DTVVVVKGDLTDLMGRVLRVRQT 855
            +L   +MNK +A+ A G+P G+TSA+  A TKG +Y+E+ +EPAV  A+ G+R +    +R VPI DMT V++V    + KPV++N ++RL R  YK DL  V  V   G + VVQ +PR+DL      AE  R  R+++RPPQ+FFN +EI      A+  R+RF G GD   DYF++N++ +G+++KE  V T ++   +   PTL+E+QRF+ R++     + DD +D  N +  ++   ++++L+  Q           SKG     DTV V++GDL  L G+++ +  T
Sbjct:  107 ELVYQIMNKCIAYAAQGKPLGITSAVA-AQTKGKIYVESYSEPAVIEAMQGIRNLMQYSMRLVPINDMTTVMTV--VPKKKPVKKNDWVRLTRGHYKGDLGLVKSVRDSGLKCVVQCLPRLDLTLSDLPAEDARIRRRTVRPPQKFFNAQEIAALGKHAL--RQRFPGMGDVFCDYFESNYYHDGYLLKEFTVGTMVKPCGEDEPPTLDELQRFRKRQKSASDTNYDDDNDGEN-EGSKRAASLLDELSELQGKTGLGVKSEESKGGLIIGDTVEVIEGDLVGLTGKLISLDGT 394          
BLAST of mRNA_E_fasciculatus_S2_contig9335.17393.1 vs.
Match: Transcription (elongation factor SPT5 n=28 Tax=Peronosporaceae TaxID=4777 RepID=H3GCB7_PHYRM)

HSP 1 Score: 171 bits (432), Expect = 4.470e-44
Identity = 114/280 (40.71%), Postives = 163/280 (58.21%), Query Frame = 1
Query:    4 LCLSVMNKALAFKANGQPFGVTSAIVPAGTKGFLYLEAQNEPAVKAAINGLRGIYHSKLRKVPIPDMTAVLSVRSATRAKPVRQNQFIRLKRKP-YKDDLAKVVEVLAGGERAVVQFIPRIDLVSLSADAETRNARKSLRPPQRFFNPEEIKQASDEAMVDRRRFQGHGDHMDYFQNNFFLNGFVVKEVNVSTWLRADRVNPTLEEIQRFKSRREKKDPADGDDSDDERNRDAEEKETEIMEDLAMAQAMEPTNDAPLFSKGDTVVVVKGDLTDLMGRVL 840
            L +++MNK + F   G+P  V S +V + +KGF+Y+EA+ EP  K  +NGLR +    ++ VPI +MT+VL+V+  TR KP+    + R+KR   YK DL KV+E+L  G RAVV+ IPR+D + L A  E    +K  RPPQ+ F+   +  A     V RRR+   G+ MD F N+F+  G ++KEVN++T L  + VNP+L+EI RF S         G+D            E    E LA  +A +  N   L +KGDTV V++GDL +LMG VL
Sbjct:  172 LVVALMNKFIEFARRGEPLMVKS-VVASNSKGFIYVEAEREPHAKDCLNGLRDVQQWSMKLVPIHEMTSVLNVQ--TRRKPLVAGAWARMKRAGLYKGDLCKVIEILDNGARAVVKMIPRLDPIVL-AGGEQPKYKKGQRPPQKLFHANMVPGAD----VARRRYPSTGEMMDTFDNDFYQEGLLIKEVNIATMLTTEDVNPSLDEINRFSS-------VAGEDG-----------EHSAEEMLASVEADDWKNKVEL-TKGDTVRVIEGDLVNLMGVVL 424          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9335.17393.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Transcription4.730e-18495.61elongation factor SPT5 n=1 Tax=Ectocarpus siliculo... [more]
Transcription2.460e-17381.82elongation factor SPT5 n=1 Tax=Ectocarpus sp. CCAP... [more]
Transcription8.550e-4741.07elongation factor SPT5 n=1 Tax=Phytophthora palmiv... [more]
Uncharacterized7.000e-4641.07protein n=1 Tax=Phytophthora nicotianae TaxID=4790... [more]
Transcription2.020e-4538.23elongation factor SPT5 n=2 Tax=Phaeodactylum trico... [more]
Transcription2.830e-4540.71elongation factor SPT5 n=1 Tax=Nothophytophthora s... [more]
Hypothetical4.860e-4538.14protein n=1 Tax=Chaetoceros debilis TaxID=122233 R... [more]
Hypothetical1.370e-4435.78protein (Fragment) n=1 Tax=Pseudictyota dubia TaxI... [more]
Transcription1.640e-4437.76elongation factor SPT5 n=1 Tax=Attheya septentrion... [more]
Transcription4.470e-4440.71elongation factor SPT5 n=28 Tax=Peronosporaceae Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9335contigE_fasciculatus_S2_contig9335:227..5916 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score537.7
Seed ortholog evalue3.4e-150
Seed eggNOG ortholog2880.D7FI29
Model size912
KEGG koko:K11292,ko:K15172
Hectar predicted targeting categoryother localisation
Exons8
EggNOG free text desc.regulation of DNA-templated transcription, elongation
EggNOG OGsCOG5164@1,KOG1999@2759
Ec32 ortholog descriptionEarly transcription elongation factor of RNA pol II, NGN section
Ec32 orthologEc-10_003290.1
Cds size894
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03019,ko03021,ko03036
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9335.17393.1prot_E_fasciculatus_S2_contig9335.17393.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9335 245..5916 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842583.3922336-UTR-E_fasciculatus_S2_contig9335:226..2441696842583.3922336-UTR-E_fasciculatus_S2_contig9335:226..244Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9335 227..244 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842583.4168682-CDS-E_fasciculatus_S2_contig9335:244..3881696842583.4168682-CDS-E_fasciculatus_S2_contig9335:244..388Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9335 245..388 +
1696842583.433445-CDS-E_fasciculatus_S2_contig9335:1124..12771696842583.433445-CDS-E_fasciculatus_S2_contig9335:1124..1277Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9335 1125..1277 +
1696842583.4570355-CDS-E_fasciculatus_S2_contig9335:1973..21081696842583.4570355-CDS-E_fasciculatus_S2_contig9335:1973..2108Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9335 1974..2108 +
1696842583.477398-CDS-E_fasciculatus_S2_contig9335:2834..29481696842583.477398-CDS-E_fasciculatus_S2_contig9335:2834..2948Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9335 2835..2948 +
1696842583.4895172-CDS-E_fasciculatus_S2_contig9335:3567..36621696842583.4895172-CDS-E_fasciculatus_S2_contig9335:3567..3662Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9335 3568..3662 +
1696842583.500104-CDS-E_fasciculatus_S2_contig9335:4197..43031696842583.500104-CDS-E_fasciculatus_S2_contig9335:4197..4303Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9335 4198..4303 +
1696842583.510565-CDS-E_fasciculatus_S2_contig9335:5346..54331696842583.510565-CDS-E_fasciculatus_S2_contig9335:5346..5433Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9335 5347..5433 +
1696842583.5221558-CDS-E_fasciculatus_S2_contig9335:5856..59161696842583.5221558-CDS-E_fasciculatus_S2_contig9335:5856..5916Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9335 5857..5916 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9335.17393.1

>prot_E_fasciculatus_S2_contig9335.17393.1 ID=prot_E_fasciculatus_S2_contig9335.17393.1|Name=mRNA_E_fasciculatus_S2_contig9335.17393.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=298bp
MNKALAFKANGQPFGVTSAIVPAGTKGFLYLEAQNEPAVKAAINGLRGIY
HSKLRKVPIPDMTAVLSVRSATRAKPVRQNQFIRLKRKPYKDDLAKVVEV
LAGGERAVVQFIPRIDLVSLSADAETRNARKSLRPPQRFFNPEEIKQASD
EAMVDRRRFQGHGDHMDYFQNNFFLNGFVVKEVNVSTWLRADRVNPTLEE
IQRFKSRREKKDPADGDDSDDERNRDAEEKETEIMEDLAMAQAMEPTNDA
PLFSKGDTVVVVKGDLTDLMGRVLRVRQTGQSQVDAVVHIQYAYPPP*
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mRNA from alignment at E_fasciculatus_S2_contig9335:227..5916+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9335.17393.1 ID=mRNA_E_fasciculatus_S2_contig9335.17393.1|Name=mRNA_E_fasciculatus_S2_contig9335.17393.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=5690bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9335:227..5916+ (Ectocarpus fasciculatus EfasUO2)
CAGCTGTGCCTCTCGGTGATGAACAAGGCCTTGGCATTCAAGGCGAACGG GCAGCCGTTCGGGGTTACCTCCGCCATCGTCCCGGCGGGAACCAAGGGTT TCCTGTACCTGGAGGCGCAGAACGAGCCGGCCGTTAAGGCGGCCATCAAC GGACTCAGGGGGGTGCGTACGTGCGCGTAATGTGTTGCTGTTGTTGTTCT TTTGTTGCCTTCACATTGAAAACTGTTACGATCACTCTAACCAGCACCTC ACTCTCTCCGTGCTTATTTAAGTAACACTCGACGCGGTCGATTCCCGTGG TTACAGGCTAATTTACCCTAACGAAGGAAATACTCCCGTAAAACGGACCG AAGGGTCCTTGAAACCACGCGTGTATGTTTTTTGTTTGGCATCGACCGCG CTACATATCCGGCTGACCAATGAAAAGGCGCCAGTCATTCCTGCGGTCGA AAACGCAAAATGCCTCTGCTTGTGTGTATGCGTATGTGTGTTTAGGTGTG TTTTAGCAGTGCCCGTGTTGACCGGCTGGCCAATGAAAATATCTACGTCA GTTGTTGTGTGTGTTCACGTGTGGTGTGTCGTGTTCGGTTGTAGCCGGTG TGTCGTATTCGGTTGTAGCGGTTGTGTCGTATTCGGTTGTAGCCGCTGTG TCGTATCTGGTTGTAGCCGTTGTGTCGTATTTGGTTGCAGCCGTTGGTAG ATCCGTCAGTGCTTGTGTGGCCCCCCTGTCCAGCAAGAAGGCGGAGAGGA GAGGAGAGGGAGGGTCTCTCTCGCCCAGTACTTCCCTCGATCGATCGTGA GTATAGCATTGACGATCTCATCGTGCTTCACGATAACGCTCTGGCGGTTC CGTGTGTCACGGCGGATTCATTGGCGCCGTTTTTTTTTTTTTTTTCAGAT CTACCACAGCAAGCTCAGGAAGGTGCCCATCCCGGACATGACGGCTGTGC TCAGCGTGCGCAGCGCCACCCGCGCCAAGCCCGTGCGGCAGAACCAGTTC ATCCGCCTCAAGCGCAAGCCCTACAAGGACGACCTGGCCAAGGTGGTGGA GGTGAGCAAGAAAAAGAGAAAAAAAAACTGCTGTAGCAGTACTCTACTGC CGGTGCCGGTGCGATCCAGCCGATTTCACGCGCATTATAAGCGGGCGACC GGCATTATTCAGAGTATGTAACAACTTGAATGCGTGTTCCATCTGTGCCA AAGGATTCCACCGTCCTTCTACGGGGAAACTGGCATATTCGACCGGTAAA TTAACCGGGACCCCTACTGCTGTGCTGGTTTATTGGGTTTCACTTGTGGG GTTGGGCGGGGGGGACTCGGTTTTTTCCTCGACTCCGTGTTCGTGCAGGA GGCGTTTTTTTTTTTGTTGGGCCTGATGCTGTTGCTTGACAGCACGCCTC CTTGCGAGACGGTCGTTTCGAAGCCATCATGCACGTAGGGCATCTCTTGT CGGTGCGTGTATGCTGAATGAAACGTGTGTGCCGACGGCAAGACAGACCC ACTGCTGTTGTTGGACACGCGTCCCTTCCTAGACGGAAAGTGTACCGGTG GCTGCTTCAGAGACGCCACCGGTAGTGCGATAAGAACTGCGATAAGTACC TATCTTGTGTGTGTTTTAATGTACAATACTGCGCCAAGCTGAAAGACATA TGTGTGATGAAACCACCATGTGCGGTATGCATCTGTGTTTTCCCCTACCG AAAATGTCTGTGTGCCTGCCGACGCGACGCACCGCGAAACGGAACAGGTT TTGGCCGGGGGCGAGAGAGCTGTGGTGCAATTCATCCCTCGCATCGACCT CGTCTCCCTATCGGCCGACGCCGAGACCCGCAACGCAAGGAAGTCTCTCC GCCCTCCCCAGCGATTCTTCAATCCGGAAGAGGTGATATTTTTTTGTTTT TACTTTTTTCGACATGCGCAACATCATGGAAGGGCTACGATTTTGGAGGA GGTGGTTATTCCCCGTTTGCCATATGCAATGCATAACATGAAAGAAAGGC CACGATTTGGGAGATAACCCCCGTTCTGAACGAATGTTTTTGTTTTTTGT GTTGTTCCATTGGAGCATCGTGTTCTTGTGAGATGACCGTGTTCTTTGCA TGTTTTTCGTCAGGGAACGGCGTACGTCCGGTCACTTCAAGGAAGAACCG TTCAATTCTGGTTGTTGCCTCTCTCCGGGTCCGGTTACGGCGGCGTTTCT GTTGGACGTTTCTGTTATGCGGCAAAGGCAATTGTTCTAACTCGCTCGAA GGTTGCGGCACGTTGTGAGCGGAAGAAAGCGAGGCAACGACAAGAACGAA TCGACCCAGTGTTGCAAACCCGAGATTCCACCCAAGCCATGCATAGCTAC ACGAAGCAGGAAACAAGCATGAGGATCGACAAAAACTACCAAACAACAGA GTTTCAAGTGCGACGGTAACCAGACCAAAGAAGCGCCACGTCTTTCATAC CCCACATGCGCGTCCAAGATCACGACACGCATGCCACCGCGAAACGTCAC CCGAATCGGAGTCTCGTCACCCAACCGCCGACACCAAGATTGACACCCGA AACGACTTTCGAACCGAACCGAACCGAACCGAACCGAACCGGCACCCTTG ACGACCAGATCAAGCAAGCGAGTGACGAGGCTATGGTGGACCGGAGGCGC TTCCAGGGGCACGGGGACCACATGGACTACTTCCAGAACAACTTCTTCCT CAACGGCTTCGTCGTCAAAGAGGTACATGTAACCGAGTGAGGAGGCGCGA CAAGGGTAGGAAGTGAACTAATTCCTGGGAACAAAAAGCTAATTGTCGCC GTATATGTTCTGTGTGCGCTAGAATCACGAGTGAGTGAGGGGGTGCTGAA ATGTGATAACTATCAAGGGTGCCTAGATTTTGTTATAGAATCGGGCTCGG GCGCGCGTGAGTGAGTGAATGAGTGAATGGTGAATGTGACAACTACCAAA GGAAGTTCTGAGTGTCGTGGTGCTCATGGATAGATACGGTTGCGCTTACG CCCGGTCGTGTGTGAGGTCCGCAGAGGGGCGGTGCTGTGGTGGGCGGTGT CGAGACGGGAAAACACTCCAAAGAGTGGAAATGACGTGTTCTCCCCCTTT TTTCTCCTTTGTTTTTGCTTGGTTGGTGCCATCTTCTTGTAGCAACGATC TGCCTGTGTGCTTTACTCTCTTTCTGCCCCCCTTTGTTCACTCTCTCTTT CTCTCTGACCCGTCCCAGCATCATTCCTACTGCTGTGACGGCATCGTCCG TCCTCGCTCACGCGACATCCGAATGCTGTCTTGCGCGCGTGTGTGCGGTT CATTTCGTGCTTCTACTGCTACTGCTGCTGCGTACGGCTAGGTGAACGTG AGCACGTGGCTGCGCGCGGACAGAGTGAATCCCACCCTGGAGGAGATCCA GCGGTTCAAGAGCAGGAGGGAGAAGAAGGACCCGGCGTAAGAGTACAAGA GAGCAGTTGTTGCGGTGGTGCTGGTGTTGTTGTTGTTGTTGTCTTGTTGT CATCCTTGGTGTTTTTGAAACAAACCACGGTAGGATAAAAAAATATACGA AGTTGTTGTTAGCGTGAAGAATGGGAAGTTGATTGTACGTTGGTCGTCTG CTGCAAGGGGAAGATGAGGATATGGTGACGGGTAAGTCAAGTCTCAAGAG CCGATCGACGTCAAGCAAGGACATTGGTGCCGTCGCGTGGGAGTACTTGA TCGGTATTGTCAAATGCGAACGCAGTCACTAATGTCTATGTGGAAGACAA CTCGGGGCGCATCTCGCCCTTTTGAAGGCGTACCGTGCGCCACTCCTCGC ATGCTTCCGTCCTGGCATATGGTGTACGTTGAAGATGACGTTCGTGACCA TGCCCAATTGGACGAGATTTTTTTCACCTGCAGTCTTGTTTAACCTTCGG TATTATCGTCGCTTTTGTGTGTTCTTATGCTGCAACCGGGCTCGTCCCGT TGGTTTGTGGTTTGTTTTCAGCGATGGCGACGACAGCGACGACGAGCGCA ACCGCGACGCTGAGGAGAAGGAGACGGAGATCATGGAGGATCTCGCCATG GCGCAGGCCATGGAGCCCACGAACGATGTAAGCGTTCCTTGTTGTGTTGT TGTTGTTGTTGTCGTCGTCGTCTTGGTAGTGTTGTTGTTAAAGTCATCGC GTTGTTTTGTTTTGTTTTGTGGTGCTGGTGATAATCGTCGTTACTTTTTT TTTTTTGCTCGTTGGCGTTGGTCTTCGTGGCAAATCAACATTTGTCATAA CCTCTAACCAGTGCCACCTCTTCCTCTGTTATGGTACGGTACACTTCCAC CCCGTAAGGTGTACCATGGTAAATTGCAGCGAAACTCCGCGGTGTGACAC CAGAGGTGGATCAGGGCTCCCACGTGTATCCTTATGAAGCCGTAGTATGC AGCAGCAACTCAATCCAGCATTTACTGACGGCAACGCACTTGTTTTTCAC GAACTCGTGAGGCAAGGTGCACATTGTTGTGTATTTGGAATATAGAAATG ATGCATGACGCGTATTGCTTTTTTGATAAGCAACCGGCGTCATGCGTTAT TTCCTTTTTCCGAAGCCACGAAATGGTGCAGCTTGCCTCATGAGTTCCTG AAAAATATGTGCGTTGAAAAATATGTGCTTTGCCGTAAGTGTTTTGCTGG ATTGAGTATGTGATTTTTTTTTAGGCCAAACCATCATCGAGAAACTACGT ACTGGCGGAATAATTTTCACTCTCTGCACTCGGATACACGTGGCTGACCA AGGATGTGCCTCTTCCCCTCTCTTCTCTCCCCCCACGCGCCTCTTGCCTG CTTGCGACTGCTACTGCTACCGCTCGTTTCCTGCACGTGGGGTTTTTGGC ATCGACTTGCCGGGGGGTCAACGAATCAAATGGGACGGGGTTGGGATGGT GTGGGACGGATTGATATGGAATGGGATGGGATGGGATGGGATGGGATGGG AACACACACACGCCGATCGAACGAACAACGATCTGCCTGGCGCCACGGAC GGACCGGCGGGAAAAAACTTGACCGGCACACTGGGCAAATGGACGAACGG AAATCGAACAACGACCTGACTGTTTATGGGGATGGAATGGACGAATGGGG ATGGCATGTGATGTGCTCAGGCTCCGCTGTTCTCGAAGGGGGACACGGTG GTGGTGGTGAAGGGGGACCTCACGGACCTCATGGGGAGGGTGCTGAGGGT TAGACAGGTACGGCGGTAGTCTGCTGTACGCGTAGATACATTTTGTTCGT GCATGCATTGAAACCGTTGGAAGGCAAAAATGTTAATATTTCAATTTGCT ATACACTTCGAAGTACGTGTCTACGTCCAACCCAAGTGCATGGGCTGCGG AAGGTTGCTAGACAGAAAGTAGCAGTTTTTTCGTCGAAGCAGCTCTGTTG TGCTTGCTTGTTCGCCCTCTTGCTTGCTGTCATGCTGTGCGTGCTCACTG CGCATGTGTCCCCCGTCACGAACAGAAGGACTGTCGCAAGTCGACGCGGT GGTCCACATCCAGTCTGCGTGCCCCCCACGCGCGCAACTGCTGAACCCGC TGTACCTCCTTGACGATCTATTGCTGTGCATTGCTGTGCGGTGCTGTGTT GTGGTGTATTTGTTTGTTTGTGGCCGTCAGACGGGGCAGTCACAAGTCGA CGCCGTGGTGCACATCCAGTATGCGTACCCCCCTCCCTAA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9335:227..5916+

>mRNA_E_fasciculatus_S2_contig9335.17393.1 ID=mRNA_E_fasciculatus_S2_contig9335.17393.1|Name=mRNA_E_fasciculatus_S2_contig9335.17393.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=894bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9335:227..5916+ (Ectocarpus fasciculatus EfasUO2)
ATGAACAAGGCCTTGGCATTCAAGGCGAACGGGCAGCCGTTCGGGGTTAC
CTCCGCCATCGTCCCGGCGGGAACCAAGGGTTTCCTGTACCTGGAGGCGC
AGAACGAGCCGGCCGTTAAGGCGGCCATCAACGGACTCAGGGGGATCTAC
CACAGCAAGCTCAGGAAGGTGCCCATCCCGGACATGACGGCTGTGCTCAG
CGTGCGCAGCGCCACCCGCGCCAAGCCCGTGCGGCAGAACCAGTTCATCC
GCCTCAAGCGCAAGCCCTACAAGGACGACCTGGCCAAGGTGGTGGAGGTT
TTGGCCGGGGGCGAGAGAGCTGTGGTGCAATTCATCCCTCGCATCGACCT
CGTCTCCCTATCGGCCGACGCCGAGACCCGCAACGCAAGGAAGTCTCTCC
GCCCTCCCCAGCGATTCTTCAATCCGGAAGAGATCAAGCAAGCGAGTGAC
GAGGCTATGGTGGACCGGAGGCGCTTCCAGGGGCACGGGGACCACATGGA
CTACTTCCAGAACAACTTCTTCCTCAACGGCTTCGTCGTCAAAGAGGTGA
ACGTGAGCACGTGGCTGCGCGCGGACAGAGTGAATCCCACCCTGGAGGAG
ATCCAGCGGTTCAAGAGCAGGAGGGAGAAGAAGGACCCGGCCGATGGCGA
CGACAGCGACGACGAGCGCAACCGCGACGCTGAGGAGAAGGAGACGGAGA
TCATGGAGGATCTCGCCATGGCGCAGGCCATGGAGCCCACGAACGATGCT
CCGCTGTTCTCGAAGGGGGACACGGTGGTGGTGGTGAAGGGGGACCTCAC
GGACCTCATGGGGAGGGTGCTGAGGGTTAGACAGACGGGGCAGTCACAAG
TCGACGCCGTGGTGCACATCCAGTATGCGTACCCCCCTCCCTAA
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