mRNA_E_fasciculatus_S2_contig933.17390.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig933.17390.1
Unique NamemRNA_E_fasciculatus_S2_contig933.17390.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig933.17390.1 vs.
Match: DAO (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LEA9_9PHAE)

HSP 1 Score: 188 bits (478), Expect = 1.680e-53
Identity = 100/107 (93.46%), Postives = 103/107 (96.26%), Query Frame = 1
Query:    1 GRLARPMAMLGPTMSDVRIHKDVVVIGGGLAGLSTALELAKRGKQVTVLSRNRAEAAAEAAGGMIAPQAERLESGPYLDLCLTSRAMYAEWVRSMEAIAGMGGEKAG 321
            GRL+R M MLG T+SDVRIHKDVVVIGGGLAGLSTALELAKRGKQVTVLSRNRAEAAAEAAGGMIAPQAERLESGPYLDLCLTSRAMYAEWVRS+EAIAGMGGE AG
Sbjct:   31 GRLSRSMVMLGSTISDVRIHKDVVVIGGGLAGLSTALELAKRGKQVTVLSRNRAEAAAEAAGGMIAPQAERLESGPYLDLCLTSRAMYAEWVRSIEAIAGMGGETAG 137          
BLAST of mRNA_E_fasciculatus_S2_contig933.17390.1 vs.
Match: Glycine (oxidase n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U8T7_9STRA)

HSP 1 Score: 108 bits (271), Expect = 1.990e-25
Identity = 59/100 (59.00%), Postives = 75/100 (75.00%), Query Frame = 1
Query:    7 LARPMAMLGPTMSDVRIHKD------VVVIGGGLAGLSTALELAKRGKQVTVLSRNRAEAAAEAAGGMIAPQAERLESGPYLDLCLTSRAMYAEWVRSME 288
            L R +A + P  S +   +D      V+VIGGGLAGLSTALEL++RG +V V+SR+ AE+A+ AAGGM+APQAERLE+GPYLDLCL SR MY+EW   +E
Sbjct:   54 LHRSVARIRPQGSSLMAKRDAPGGGDVLVIGGGLAGLSTALELSQRGAKVVVVSRDEAESASMAAGGMLAPQAERLEAGPYLDLCLQSRDMYSEWAADLE 153          
BLAST of mRNA_E_fasciculatus_S2_contig933.17390.1 vs.
Match: DAO (domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DFC1_9STRA)

HSP 1 Score: 108 bits (269), Expect = 4.120e-25
Identity = 54/75 (72.00%), Postives = 66/75 (88.00%), Query Frame = 1
Query:   64 DVVVIGGGLAGLSTALELAKRGKQVTVLSRNRAEAAAEAAGGMIAPQAERLESGPYLDLCLTSRAMYAEWVRSME 288
            DV+VIGGGLAGLSTALEL++RG +V V+SR+ AE+A+ AAGGM+APQAERLE+GPYLDLCL SR MY+EW   +E
Sbjct:   11 DVLVIGGGLAGLSTALELSQRGAKVVVVSRDEAESASMAAGGMLAPQAERLEAGPYLDLCLQSRDMYSEWAADLE 85          
BLAST of mRNA_E_fasciculatus_S2_contig933.17390.1 vs.
Match: glycine (oxidase ThiO n=1 Tax=Acaryochloris sp. CCMEE 5410 TaxID=310037 RepID=UPI0002483A50)

HSP 1 Score: 100 bits (248), Expect = 8.250e-23
Identity = 48/80 (60.00%), Postives = 68/80 (85.00%), Query Frame = 1
Query:   64 DVVVIGGGLAGLSTALELAKRGKQVTVLSRNRAEAAAEAAGGMIAPQAERLESGPYLDLCLTSRAMYAEWVRSMEAIAGM 303
            +V+VIGGGL GL+TA+ELA++G +VTV++R   EAA ++A GM+APQAERL SGP LDLCL SR++YA+WV+++E + G+
Sbjct:    6 EVLVIGGGLIGLATAVELAQQGVEVTVITRKLCEAATQSAAGMLAPQAERLSSGPLLDLCLRSRSLYADWVQTLENLTGL 85          
BLAST of mRNA_E_fasciculatus_S2_contig933.17390.1 vs.
Match: Hypothetical (protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WY37_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 3.180e-21
Identity = 52/97 (53.61%), Postives = 71/97 (73.20%), Query Frame = 1
Query:    7 LARPMAMLGPTMSDVRIHK--DVVVIGGGLAGLSTALELAKRGKQVTVLSRNRAEAAAEAAGGMIAPQAERLESGPYLDLCLTSRAMYAEWVRSMEA 291
            L    A L PT + V   K  DVVV+GGG++GL+TALELA+RG+ V V+SR+ A++A  AAGGM+APQAERLE GP LDLC+ +R  +  W+ +++A
Sbjct:    8 LVTTAAALRPTQTRVSTTKKLDVVVVGGGISGLATALELARRGRSVRVVSRDLAKSATLAAGGMLAPQAERLEEGPLLDLCVQAREAWPSWLDTLDA 104          
BLAST of mRNA_E_fasciculatus_S2_contig933.17390.1 vs.
Match: Bifunctional (protein ThiO/ThiG n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z2J0_PORPP)

HSP 1 Score: 96.7 bits (239), Expect = 4.460e-21
Identity = 49/78 (62.82%), Postives = 62/78 (79.49%), Query Frame = 1
Query:   64 DVVVIGGGLAGLSTALELAKRGKQVTVLSRNRAEAAAEAAGGMIAPQAERLESGPYLDLCLTSRAMYAEWVRSMEAIA 297
            DVVV+G G+ GL+ A+ELA+RG  VTVLSR  AE+A  AA GM+APQ+E++E GP LDLCL SR MYA+WVR + A+A
Sbjct:   76 DVVVVGAGIHGLACAVELARRGAVVTVLSRELAESATRAAAGMLAPQSEQIEQGPLLDLCLRSRDMYADWVRMVSALA 153          
BLAST of mRNA_E_fasciculatus_S2_contig933.17390.1 vs.
Match: Thiazole (synthase (Fragment) n=1 Tax=filamentous cyanobacterium CCP2 TaxID=2107700 RepID=A0A2T1CZ24_9CYAN)

HSP 1 Score: 89.7 bits (221), Expect = 4.790e-21
Identity = 46/80 (57.50%), Postives = 59/80 (73.75%), Query Frame = 1
Query:   61 KDVVVIGGGLAGLSTALELAKRGKQVTVLSRNRAEAAAEAAGGMIAPQAERLESGPYLDLCLTSRAMYAEWVRSMEAIAG 300
            KDVV++GGG+ GLS A+EL  RG  VTVLSR+  +AAA AA GM+AP AE + S P LDLCL S+A Y +WV  +E ++G
Sbjct:    5 KDVVIVGGGIVGLSIAVELKLRGATVTVLSRDAQQAAAYAAAGMLAPAAENISSSPMLDLCLKSQARYPDWVGKLEDLSG 84          
BLAST of mRNA_E_fasciculatus_S2_contig933.17390.1 vs.
Match: FAD-dependent (oxidoreductase n=1 Tax=Pseudanabaenaceae cyanobacterium LEGE 13415 TaxID=2777976 RepID=UPI0019EEE1DF)

HSP 1 Score: 94.7 bits (234), Expect = 6.290e-21
Identity = 45/81 (55.56%), Postives = 62/81 (76.54%), Query Frame = 1
Query:   61 KDVVVIGGGLAGLSTALELAKRGKQVTVLSRNRAEAAAEAAGGMIAPQAERLESGPYLDLCLTSRAMYAEWVRSMEAIAGM 303
            +++++IGGG+ GLS A+EL  +G  VT+LSR+ +EAA  AA GMIAPQAE +   P LDLCL SRA+Y +W+R +EA+ GM
Sbjct:    5 REILIIGGGIIGLSIAIELKSQGVPVTILSRDFSEAATHAAAGMIAPQAEEIPPSPMLDLCLASRALYPDWIRKLEALTGM 85          
BLAST of mRNA_E_fasciculatus_S2_contig933.17390.1 vs.
Match: Glycine (oxidase ThiO n=1 Tax=Leptolyngbya sp. 'hensonii' TaxID=1922337 RepID=A0A1Q8ZJH9_9CYAN)

HSP 1 Score: 94.7 bits (234), Expect = 6.360e-21
Identity = 48/80 (60.00%), Postives = 61/80 (76.25%), Query Frame = 1
Query:   64 DVVVIGGGLAGLSTALELAKRGKQVTVLSRNRAEAAAEAAGGMIAPQAERLESGPYLDLCLTSRAMYAEWVRSMEAIAGM 303
            +++VIGGG+ GLS A+EL  RG  VT++SRN  EAAA AA GM+APQAE + SGP LDLCL SRA+Y EWV  +E + G+
Sbjct:    4 EIIVIGGGIMGLSIAIELRLRGMIVTLISRNVREAAAYAAAGMLAPQAEAIPSGPMLDLCLRSRALYPEWVGKLETLTGL 83          
BLAST of mRNA_E_fasciculatus_S2_contig933.17390.1 vs.
Match: glycine (oxidase ThiO n=1 Tax=Oscillatoria sp. FACHB-1406 TaxID=2692846 RepID=UPI00168499E4)

HSP 1 Score: 94.7 bits (234), Expect = 6.970e-21
Identity = 49/79 (62.03%), Postives = 60/79 (75.95%), Query Frame = 1
Query:   67 VVVIGGGLAGLSTALELAKRGKQVTVLSRNRAEAAAEAAGGMIAPQAERLESGPYLDLCLTSRAMYAEWVRSMEAIAGM 303
            ++VIGGG+ GLS A+EL  RG  VTVLS +  EAA   A GMIAPQAER+   P L+LCL SRAMYA+W+R +EAIAG+
Sbjct:    1 MIVIGGGIIGLSVAIELRLRGVSVTVLSHDAREAAGFVAAGMIAPQAERIPPSPMLELCLRSRAMYADWIRKLEAIAGL 79          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig933.17390.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
DAO1.680e-5393.46domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
Glycine1.990e-2559.00oxidase n=2 Tax=Nannochloropsis gaditana TaxID=725... [more]
DAO4.120e-2572.00domain-containing protein n=1 Tax=Nannochloropsis ... [more]
glycine8.250e-2360.00oxidase ThiO n=1 Tax=Acaryochloris sp. CCMEE 5410 ... [more]
Hypothetical3.180e-2153.61protein n=2 Tax=Pelagomonas calceolata TaxID=35677... [more]
Bifunctional4.460e-2162.82protein ThiO/ThiG n=1 Tax=Porphyridium purpureum T... [more]
Thiazole4.790e-2157.50synthase (Fragment) n=1 Tax=filamentous cyanobacte... [more]
FAD-dependent6.290e-2155.56oxidoreductase n=1 Tax=Pseudanabaenaceae cyanobact... [more]
Glycine6.360e-2160.00oxidase ThiO n=1 Tax=Leptolyngbya sp. 'hensonii' T... [more]
glycine6.970e-2162.03oxidase ThiO n=1 Tax=Oscillatoria sp. FACHB-1406 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig933contigE_fasciculatus_S2_contig933:24534..24860 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score190.3
Seed ortholog evalue4.6e-46
Seed eggNOG ortholog2880.D7G5B9
Model size328
KEGG rclassRC00060,RC00557
KEGG koko:K00314
KEGG ReactionR00611
KEGG Pathwayko00260,ko01100,map00260,map01100
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.oxidoreductase activity, acting on the CH-NH group of donors, flavin as acceptor
EggNOG OGsCOG0404@1,KOG2844@2759
EC1.5.8.3
Cds size309
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842583.214497-UTR-E_fasciculatus_S2_contig933:24533..245511696842583.214497-UTR-E_fasciculatus_S2_contig933:24533..24551Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig933 24534..24551 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842583.2268176-CDS-E_fasciculatus_S2_contig933:24551..248601696842583.2268176-CDS-E_fasciculatus_S2_contig933:24551..24860Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig933 24552..24860 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig933.17390.1prot_E_fasciculatus_S2_contig933.17390.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig933 24552..24860 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig933.17390.1

>prot_E_fasciculatus_S2_contig933.17390.1 ID=prot_E_fasciculatus_S2_contig933.17390.1|Name=mRNA_E_fasciculatus_S2_contig933.17390.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=103bp
MAMLGPTMSDVRIHKDVVVIGGGLAGLSTALELAKRGKQVTVLSRNRAEA
AAEAAGGMIAPQAERLESGPYLDLCLTSRAMYAEWVRSMEAIAGMGGEKA
GAG
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mRNA from alignment at E_fasciculatus_S2_contig933:24534..24860+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig933.17390.1 ID=mRNA_E_fasciculatus_S2_contig933.17390.1|Name=mRNA_E_fasciculatus_S2_contig933.17390.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=327bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig933:24534..24860+ (Ectocarpus fasciculatus EfasUO2)
GGGAGACTGGCACGGCCCATGGCCATGCTTGGACCTACCATGTCCGACGT GCGTATCCACAAAGACGTTGTCGTTATCGGTGGTGGCCTCGCCGGTCTCT CGACGGCCTTGGAGCTGGCGAAGCGAGGGAAGCAGGTAACCGTCCTGTCT CGCAACCGCGCGGAAGCCGCAGCAGAGGCTGCCGGGGGGATGATTGCTCC TCAAGCTGAGCGGTTGGAGAGCGGGCCTTACCTTGACCTGTGCTTGACGA GCCGGGCAATGTACGCGGAGTGGGTCCGGAGCATGGAGGCGATTGCGGGG ATGGGGGGAGAGAAGGCTGGAGCTGGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig933:24534..24860+

>mRNA_E_fasciculatus_S2_contig933.17390.1 ID=mRNA_E_fasciculatus_S2_contig933.17390.1|Name=mRNA_E_fasciculatus_S2_contig933.17390.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=309bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig933:24534..24860+ (Ectocarpus fasciculatus EfasUO2)
ATGGCCATGCTTGGACCTACCATGTCCGACGTGCGTATCCACAAAGACGT
TGTCGTTATCGGTGGTGGCCTCGCCGGTCTCTCGACGGCCTTGGAGCTGG
CGAAGCGAGGGAAGCAGGTAACCGTCCTGTCTCGCAACCGCGCGGAAGCC
GCAGCAGAGGCTGCCGGGGGGATGATTGCTCCTCAAGCTGAGCGGTTGGA
GAGCGGGCCTTACCTTGACCTGTGCTTGACGAGCCGGGCAATGTACGCGG
AGTGGGTCCGGAGCATGGAGGCGATTGCGGGGATGGGGGGAGAGAAGGCT
GGAGCTGGA
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