mRNA_E_fasciculatus_S2_contig9324.17384.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig9324.17384.1 vs.
Match: MsrB (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L5V8_9PHAE) HSP 1 Score: 341 bits (875), Expect = 1.080e-117 Identity = 164/172 (95.35%), Postives = 169/172 (98.26%), Query Frame = 1
Query: 31 MRPSTQWAAAIALLRSASAFVPTSGPVASLSRVGSTTSAA-RSIHRSSALNMQFWKPPATSKHTRLAKEPALDKCKPDAEWKEQLKPNTFQVLRGKATEPAGVRKASGGFDDVFDKGTYVCAGCRTPLYEHTHKFDCGCGWPGFWTNIQDAVYEEKDADGRRCEILCSGCGG 543
MRPSTQWAAAIAL+RSASAFVPTSGPVA+L RVGSTTSAA RS+HRSSALNMQFWKPPATSKHTRLAKEPALDKCKPDAEWKEQLKPNT+QVLRGKATEPAGVRKASGGFDDVFDKGTYVCAGCRTPLYE +HKFDCGCGWPGFWTNIQDAVYEEKDADGRRCEILCSGCGG
Sbjct: 1 MRPSTQWAAAIALVRSASAFVPTSGPVAALYRVGSTTSAAHRSVHRSSALNMQFWKPPATSKHTRLAKEPALDKCKPDAEWKEQLKPNTYQVLRGKATEPAGVRKASGGFDDVFDKGTYVCAGCRTPLYEDSHKFDCGCGWPGFWTNIQDAVYEEKDADGRRCEILCSGCGG 172
BLAST of mRNA_E_fasciculatus_S2_contig9324.17384.1 vs.
Match: Mss4-like (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9K1_9STRA) HSP 1 Score: 186 bits (471), Expect = 2.520e-56 Identity = 96/163 (58.90%), Postives = 111/163 (68.10%), Query Frame = 1
Query: 55 AAIALLRSASAFVPTSGPVASLSRVGSTTSAARSIHRSSALNMQFWKPPATSKHTRLAKEPALDKCKPDAEWKEQLKPNTFQVLRGKATEPAGVRKASGGFDDVFDKGTYVCAGCRTPLYEHTHKFDCGCGWPGFWTNIQDAVYEEKDADGRRCEILCSGCGG 543
AA++ + A AFVP S + S GS + RSI RS+ + MQFWK P T LAKEP LDK K DAE+K + P + VLR KATEP V A GGFDD + GTYVC C TPLY+ +HKFDCGCGWPGFWTNI+DAVYEE+D DG R EILCS CGG
Sbjct: 11 AALSGVSGALAFVPASSLAITRSS-GSQLATRRSIQRST-VRMQFWKSPGPDPSTNLAKEPPLDKMKSDAEYKATMDPVAYSVLRQKATEPRSVTVARGGFDDHTEDGTYVCGCCGTPLYDSSHKFDCGCGWPGFWTNIKDAVYEERDKDGFRAEILCSSCGG 171
BLAST of mRNA_E_fasciculatus_S2_contig9324.17384.1 vs.
Match: Peptide (methionine sulfoxide reductase b5 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U3G1_9STRA) HSP 1 Score: 166 bits (420), Expect = 3.120e-48 Identity = 89/165 (53.94%), Postives = 104/165 (63.03%), Query Frame = 1
Query: 70 LRSASAFVPTSGPV-------ASLSRVGSTTSAARSIHRSSALNMQFWKPPATSKHTRLAKEPALDKCKPDAEWKEQLKPNTFQVLRGKATEPAGVRKASGGFDDVFDKGTYVCAGCRTPLYEHTHKFDCGCGWPGFWTNIQDAVYEEKDADGRRCEILCSGCGG 543
+R AS FV + P AS S VG+ + RS S L + + A T LA +PAL K K + EWK+ L P F+VLR KATEP V A GG+DD KGTYVC GC+TPLY KFDCGCGWPGFWTNI+DAVYE++DADG RCEILCS C G
Sbjct: 43 IRGASGFVSSGAPKKLFWTRSASFSAVGARS---RSTTVPSMLFSRMFATQAQDPATNLAAKPALTKVKTEEEWKQILSPTAFKVLRRKATEPRKVTVAKGGWDDHNAKGTYVCTGCKTPLYTSAMKFDCGCGWPGFWTNIKDAVYEQRDADGFRCEILCSECDG 204
BLAST of mRNA_E_fasciculatus_S2_contig9324.17384.1 vs.
Match: Hypothetical (protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6B3_9STRA) HSP 1 Score: 149 bits (377), Expect = 5.050e-42 Identity = 67/116 (57.76%), Postives = 79/116 (68.10%), Query Frame = 1
Query: 193 KPPATSKHTRLAKEPALDKCKPDAEWKEQLKPNTFQVLRGKATEPAGVRKASGGFDDVFDKGTYVCAGCRTPLYEHTHKFDCGCGWPGFWTNIQDAVYEEKDADGRRCEILCSGCG 540
K P T + E K + D +W L+P ++VLR K TEPAG A+GGFDD +KGTY+CAGC TPLY HKFDCGCGWPGFWTNI+ AVYE+ D DG RCEI+CS CG
Sbjct: 62 KMPDPDPSTNVVFEMDGSKSRSDDDWYNTLRPVEYKVLRMKGTEPAGQTVANGGFDDHTEKGTYICAGCSTPLYTSEHKFDCGCGWPGFWTNIKGAVYEKLDKDGFRCEIMCSACG 177
BLAST of mRNA_E_fasciculatus_S2_contig9324.17384.1 vs.
Match: Hypothetical (protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813KAL6_POLGL) HSP 1 Score: 141 bits (356), Expect = 3.530e-39 Identity = 71/141 (50.35%), Postives = 86/141 (60.99%), Query Frame = 1
Query: 136 TTSAARSIHRSSALNMQFWKPPATSKHTRLAKEPALDKCKPDAEWKEQLKPNTFQVLRGKATEPAGVRKASGGFDDVFDKGTYVCAGC-----RTPLYEHTHKFDCGCGWPGFWTNIQDAVYEEKDADGRRCEILCSGCGG 543
T SAA + +R + ++ P T L A+D PDAEWK +L N ++VLR KATEP GFDD +G Y CAGC PLY KFDCGCGWPGFWTN++DAVYE++DADGRRCE+LCS C G
Sbjct: 21 TLSAAMAANR----DPSTYEEPTQKGSTHLLPTGAVDVKLPDAEWKSKLPENVYKVLRQKATEPGHKLTFPKGFDDHKAEGVYACAGCLAAGFEVPLYTSRMKFDCGCGWPGFWTNVKDAVYEKRDADGRRCEVLCSRCDG 157
BLAST of mRNA_E_fasciculatus_S2_contig9324.17384.1 vs.
Match: MSRB5 (protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812INW2_SYMPI) HSP 1 Score: 139 bits (349), Expect = 1.950e-38 Identity = 61/100 (61.00%), Postives = 72/100 (72.00%), Query Frame = 1
Query: 259 DAEWKEQLKPNTFQVLRGKATEPAGVRKASGGFDDVFDKGTYVCAGC-----RTPLYEHTHKFDCGCGWPGFWTNIQDAVYEEKDADGRRCEILCSGCGG 543
+ EW ++L+ N F+VLR KATEP K GFDD D G Y+CAGC + PLY + KFDCGCGWPGFWTN+Q AVYE++DADGRRCEILCS C G
Sbjct: 33 EKEWSDKLRTNVFKVLRKKATEPGHRIKFPQGFDDHNDSGIYICAGCFAAGQQVPLYTSSMKFDCGCGWPGFWTNVQGAVYEQRDADGRRCEILCSKCEG 132
BLAST of mRNA_E_fasciculatus_S2_contig9324.17384.1 vs.
Match: Hypothetical (protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813HSM0_POLGL) HSP 1 Score: 141 bits (356), Expect = 1.130e-36 Identity = 66/120 (55.00%), Postives = 75/120 (62.50%), Query Frame = 1
Query: 199 PATSKHTRLAKEPALDKCKPDAEWKEQLKPNTFQVLRGKATEPAGVRKASGGFDDVFDKGTYVCAGC-----RTPLYEHTHKFDCGCGWPGFWTNIQDAVYEEKDADGRRCEILCSGCGG 543
P T L A D PDAEWK +L N ++VLR KATEP G GFDD +G Y CAGC PLY KFDCGCGWPGFWTN++DAVYE++DADG RCE+LCS C G
Sbjct: 305 PTQKGSTHLLPTGAKDVSLPDAEWKSKLPENVYKVLRQKATEPGGKLTFPKGFDDHKAEGVYACAGCLAAGFEVPLYTSRMKFDCGCGWPGFWTNVKDAVYEKRDADGSRCEVLCSRCDG 424
BLAST of mRNA_E_fasciculatus_S2_contig9324.17384.1 vs.
Match: Peptide (methionine sulfoxide reductase B3 n=1 Tax=Perkinsus chesapeaki TaxID=330153 RepID=A0A7J6MIT1_PERCH) HSP 1 Score: 133 bits (334), Expect = 2.840e-36 Identity = 63/109 (57.80%), Postives = 74/109 (67.89%), Query Frame = 1
Query: 217 TRLAKEPALDKCKPDAEWKEQLKPNTFQVLRGKATEPAGVRKASGGFDDVFDKGTYVCAGCRTPLYEHTHKFDCGCGWPGFWTNIQDAVYEEKDADGR-RCEILCSGCG 540
T L + LDK D +KE+L P F+VLR ATEP G+ A GG+DD F GTY+C C TPLY+ +HKFDCGCGWPG+WTNI DAV E + DG R EILCS CG
Sbjct: 14 TSLQIDGTLDKG--DDYFKERLTPTQFKVLREAATEPRGITMAKGGWDDNFADGTYLCGACDTPLYDSSHKFDCGCGWPGYWTNIDDAVAERMETDGSGRIEILCSKCG 120
BLAST of mRNA_E_fasciculatus_S2_contig9324.17384.1 vs.
Match: Hypothetical (protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1F6B5_NOCSC) HSP 1 Score: 132 bits (332), Expect = 1.370e-35 Identity = 56/100 (56.00%), Postives = 69/100 (69.00%), Query Frame = 1
Query: 259 DAEWKEQLKPNTFQVLRGKATEPAGVRKASGGFDDVFDKGTYVCAGC-----RTPLYEHTHKFDCGCGWPGFWTNIQDAVYEEKDADGRRCEILCSGCGG 543
DA W+++L N ++VLR K TEP +A GFDDVF+ G Y+C C +TP+Y KFDCGCGWPGFWTN++ VYE +DADG RCEILCS C G
Sbjct: 53 DAVWRQELSENQYKVLRLKCTEPGRATQAPLGFDDVFEPGVYLCGSCLAAGVQTPVYTSKMKFDCGCGWPGFWTNVEGNVYESRDADGHRCEILCSHCDG 152
BLAST of mRNA_E_fasciculatus_S2_contig9324.17384.1 vs.
Match: Peptide (methionine sulfoxide reductase B5 n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9DSR3_SYMMI) HSP 1 Score: 135 bits (339), Expect = 1.700e-34 Identity = 62/120 (51.67%), Postives = 77/120 (64.17%), Query Frame = 1
Query: 199 PATSKHTRLAKEPALDKCKPDAEWKEQLKPNTFQVLRGKATEPAGVRKASGGFDDVFDKGTYVCAGC-----RTPLYEHTHKFDCGCGWPGFWTNIQDAVYEEKDADGRRCEILCSGCGG 543
P ++ T L K + EW E+L+ N ++VLR KATEP GFDD D G Y+C+GC + PLY + KFDCGCGWPGFWTN++D VYE++DADGRRCEILCS C G
Sbjct: 14 PKSNGSTHLGKASTAAVRLSEKEWSEKLRTNMWKVLRNKATEPGHRITFPQGFDDHKDSGVYLCSGCYFAGLQVPLYTSSMKFDCGCGWPGFWTNVKDEVYEQRDADGRRCEILCSKCDG 133 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9324.17384.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig9324.17384.1 >prot_E_fasciculatus_S2_contig9324.17384.1 ID=prot_E_fasciculatus_S2_contig9324.17384.1|Name=mRNA_E_fasciculatus_S2_contig9324.17384.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=172bp MRPSTQWAAAIALLRSASAFVPTSGPVASLSRVGSTTSAARSIHRSSALNback to top mRNA from alignment at E_fasciculatus_S2_contig9324:176..4531- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig9324.17384.1 ID=mRNA_E_fasciculatus_S2_contig9324.17384.1|Name=mRNA_E_fasciculatus_S2_contig9324.17384.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4356bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9324:176..4531- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9324:176..4531- >mRNA_E_fasciculatus_S2_contig9324.17384.1 ID=mRNA_E_fasciculatus_S2_contig9324.17384.1|Name=mRNA_E_fasciculatus_S2_contig9324.17384.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=516bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9324:176..4531- (Ectocarpus fasciculatus EfasUO2)back to top |