mRNA_E_fasciculatus_S2_contig930.17355.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig930.17355.1
Unique NamemRNA_E_fasciculatus_S2_contig930.17355.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig930.17355.1 vs.
Match: Arsenite (translocating ATPase like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUN3_ECTSI)

HSP 1 Score: 169 bits (428), Expect = 6.130e-48
Identity = 104/123 (84.55%), Postives = 106/123 (86.18%), Query Frame = -2 
Query:    3 LPAAAAYRRLTAXXXXXXX----CPASTRLLAGSASSSALTPTAPHAAGLRKARSSRGGGVRSLKSVASPAGLEKGVSARGLEELLEARNGVNERFVFFGGKGGVGKTSTAAAVAIQCADAGL 359
            LPAAAAYRRLT+           CP STRLLAGSASS ALTPTAP A GLRKARSSR GGVRSLKSVA+PAGLEKGVSARGL ELLEARNGVNERFVFFGGKGGVGKTSTAAAVAIQCADAGL
Sbjct:   51 LPAAAAYRRLTSASQHQQRPQRRCPTSTRLLAGSASS-ALTPTAPQA-GLRKARSSRSGGVRSLKSVAAPAGLEKGVSARGLGELLEARNGVNERFVFFGGKGGVGKTSTAAAVAIQCADAGL 171
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BLAST of mRNA_E_fasciculatus_S2_contig930.17355.1 vs.
Match: Uncharacterized (protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QK77_CHOCR)

HSP 1 Score: 57.4 bits (137), Expect = 3.760e-7
Identity = 30/49 (61.22%), Postives = 38/49 (77.55%), Query Frame = -2 
Query:    3 KGVSARGLEELLEARNGVNERFVFFGGKGGVGKTSTAAAVAIQCADAGL 149
            K  S+  L+ L+  R+    RF+FFGGKGGVGKTS+AAAVA++CADAGL
Sbjct:   66 KTASSANLDSLVAQRD--QRRFIFFGGKGGVGKTSSAAAVAVECADAGL 112
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BLAST of mRNA_E_fasciculatus_S2_contig930.17355.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0NW41_9EUKA)

HSP 1 Score: 52.0 bits (123), Expect = 2.850e-5
Identity = 26/46 (56.52%), Postives = 36/46 (78.26%), Query Frame = -2 
Query:    3 SARGLEELLEARNGVNERFVFFGGKGGVGKTSTAAAVAIQCADAGL 140
            + R L +LLE R+   +R +F GGKGGVGKTST++A+A++CAD GL
Sbjct:   35 ATRPLAQLLE-RDSTQQRLIFVGGKGGVGKTSTSSAIALRCADKGL 79
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BLAST of mRNA_E_fasciculatus_S2_contig930.17355.1 vs.
Match: Uncharacterized (protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PKT4_PORUM)

HSP 1 Score: 51.2 bits (121), Expect = 5.480e-5
Identity = 26/42 (61.90%), Postives = 34/42 (80.95%), Query Frame = -2 
Query:    3 LEELLEARNGVNERFVFFGGKGGVGKTSTAAAVAIQCADAGL 128
            L +LL+ R+    R++F GGKGGVGKTSTAAA+A++CAD GL
Sbjct:   97 LRKLLDDRH--TRRYIFVGGKGGVGKTSTAAALAVRCADEGL 136
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BLAST of mRNA_E_fasciculatus_S2_contig930.17355.1 vs.
Match: Arsenite (efflux ATP-binding protein ArsA n=1 Tax=Natronoarchaeum philippinense TaxID=558529 RepID=A0A285P7G0_9EURY)

HSP 1 Score: 50.8 bits (120), Expect = 6.520e-5
Identity = 24/37 (64.86%), Postives = 31/37 (83.78%), Query Frame = -2 
Query:    3 EARNGVNERFVFFGGKGGVGKTSTAAAVAIQCADAGL 113
            +A  G +ERFVFFGGKGGVGKT+ ++A A+ CA+AGL
Sbjct:    5 DAMGGPSERFVFFGGKGGVGKTTVSSAFAVGCAEAGL 41
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig930.17355.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
Arsenite6.130e-4884.55translocating ATPase like protein n=1 Tax=Ectocarp... [more]
Uncharacterized3.760e-761.22protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=... [more]
Hypothetical2.850e-556.52protein (Fragment) n=1 Tax=Calcidiscus leptoporus ... [more]
Uncharacterized5.480e-561.90protein n=1 Tax=Porphyra umbilicalis TaxID=2786 Re... [more]
Arsenite6.520e-564.86efflux ATP-binding protein ArsA n=1 Tax=Natronoarc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig930contigE_fasciculatus_S2_contig930:4272..4631 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start0
Model size361
Hectar predicted targeting categoryother localisation
Exons1
Cds size342
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842580.130281-CDS-E_fasciculatus_S2_contig930:4271..46131696842580.130281-CDS-E_fasciculatus_S2_contig930:4271..4613Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig930 4272..4613 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842580.1436174-UTR-E_fasciculatus_S2_contig930:4613..46311696842580.1436174-UTR-E_fasciculatus_S2_contig930:4613..4631Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig930 4614..4631 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig930.17355.1prot_E_fasciculatus_S2_contig930.17355.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig930 4272..4613 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig930.17355.1

>prot_E_fasciculatus_S2_contig930.17355.1 ID=prot_E_fasciculatus_S2_contig930.17355.1|Name=mRNA_E_fasciculatus_S2_contig930.17355.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=114bp
LSPASAHWIATAAAVDVLPTPPLPPKKTKRSLTPFLASSSSSSPRAETPF
SRPAGDATLFSERTPPPLLLLALRRPAACGAVGVNADDDADPARRRVEAG
QRRCCCEAAVNRR*
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mRNA from alignment at E_fasciculatus_S2_contig930:4272..4631+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig930.17355.1 ID=mRNA_E_fasciculatus_S2_contig930.17355.1|Name=mRNA_E_fasciculatus_S2_contig930.17355.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=360bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig930:4272..4631+ (Ectocarpus fasciculatus EfasUO2)
CTTAGCCCGGCATCAGCACACTGGATCGCGACGGCGGCGGCCGTGGACGT
CTTGCCGACACCGCCCTTGCCGCCAAAGAAGACGAAGCGCTCGTTAACCC
CGTTCCTTGCCTCCAGCAGCTCTTCCAGTCCACGGGCGGAGACGCCTTTC
TCCAGACCTGCCGGAGATGCCACGCTCTTCAGCGAGCGAACACCGCCACC
TCTACTGCTCCTCGCCTTGCGCAGGCCAGCAGCATGTGGCGCTGTTGGTG
TCAACGCTGATGATGATGCCGATCCCGCCAGGAGACGCGTGGAGGCCGGA
CAGCGCCGCTGCTGTTGCGAAGCGGCGGTCAATCGTCGGTAGGCCGCCGC
TGCCGGAAGC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig930:4272..4631+

>mRNA_E_fasciculatus_S2_contig930.17355.1 ID=mRNA_E_fasciculatus_S2_contig930.17355.1|Name=mRNA_E_fasciculatus_S2_contig930.17355.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=342bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig930:4272..4631+ (Ectocarpus fasciculatus EfasUO2)
CTTAGCCCGGCATCAGCACACTGGATCGCGACGGCGGCGGCCGTGGACGT
CTTGCCGACACCGCCCTTGCCGCCAAAGAAGACGAAGCGCTCGTTAACCC
CGTTCCTTGCCTCCAGCAGCTCTTCCAGTCCACGGGCGGAGACGCCTTTC
TCCAGACCTGCCGGAGATGCCACGCTCTTCAGCGAGCGAACACCGCCACC
TCTACTGCTCCTCGCCTTGCGCAGGCCAGCAGCATGTGGCGCTGTTGGTG
TCAACGCTGATGATGATGCCGATCCCGCCAGGAGACGCGTGGAGGCCGGA
CAGCGCCGCTGCTGTTGCGAAGCGGCGGTCAATCGTCGGTAG
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