mRNA_E_fasciculatus_S2_contig93.17352.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig93.17352.1
Unique NamemRNA_E_fasciculatus_S2_contig93.17352.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig93.17352.1 vs.
Match: PseudoU_synth_2 (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN60_9PHAE)

HSP 1 Score: 567 bits (1462), Expect = 9.840e-200
Identity = 284/300 (94.67%), Postives = 288/300 (96.00%), Query Frame = 3
Query:    3 HGFRSISSGNGGTRVRAAT--AATNEVGEVQVEERPWLGNGPDPMASTGKARPGTSASLGAAAVGEAGGKGKGVAPEEMWLNGPFNAPVPPGPLEVLFVDDEIVVCNKPSDLLCVPGRIEKDSLATRAALELGHYRVDRMIVHRLDMATSGCVIMARTDAALKDLNRQFRERQVRKRYVAMVHGVLSADEGEVDLPLCRNRGCPPLHMVNFEHGKPSLTKWRVLDRAADRTRVELIPVSGRSHQLRLHMNAIGHPILGDHFYGTKDSLALADRCLLHAHTLCLRHPKTGERTMFTAPCEF 896
            HGFRSISS NGGTRV  AT  AATNEV EVQVEERPWLGNGPDPMASTGK RPGTSASLGAA VGE GGKGKGVA EEMWLNGPFNAPVPPGPL++LFVD+EIVVCNKPSDLLCVPGRIEKDSLATRAALELGHYRVDRMIVHRLDMATSGCVIMARTDAALKDLNRQFRERQVRKRYVAMVHGVL ADEGEVDLPLCRNRGCPPLHMVNFEHGKPSLTKWRVL+RAADRTRVELIPVSGRSHQLRLHMNAIGHPILGDHFYGTKDSL LADRCLLHAHTLCLRHPKTGERTMFTAPCEF
Sbjct:   31 HGFRSISSCNGGTRVHVATTAAATNEVREVQVEERPWLGNGPDPMASTGKIRPGTSASLGAAVVGEPGGKGKGVAAEEMWLNGPFNAPVPPGPLDILFVDEEIVVCNKPSDLLCVPGRIEKDSLATRAALELGHYRVDRMIVHRLDMATSGCVIMARTDAALKDLNRQFRERQVRKRYVAMVHGVLWADEGEVDLPLCRNRGCPPLHMVNFEHGKPSLTKWRVLERAADRTRVELIPVSGRSHQLRLHMNAIGHPILGDHFYGTKDSLDLADRCLLHAHTLCLRHPKTGERTMFTAPCEF 330          
BLAST of mRNA_E_fasciculatus_S2_contig93.17352.1 vs.
Match: Pseudouridylate (synthases, 23S RNA-specific n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR37_ECTSI)

HSP 1 Score: 498 bits (1281), Expect = 2.050e-173
Identity = 246/256 (96.09%), Postives = 250/256 (97.66%), Query Frame = 3
Query:  129 MASTGKARPGTSASLGAAAVGEAGGKGKGVAPEEMWLNGPFNAPVPPGPLEVLFVDDEIVVCNKPSDLLCVPGRIEKDSLATRAALELGHYRVDRMIVHRLDMATSGCVIMARTDAALKDLNRQFRERQVRKRYVAMVHGVLSADEGEVDLPLCRNRGCPPLHMVNFEHGKPSLTKWRVLDRAADRTRVELIPVSGRSHQLRLHMNAIGHPILGDHFYGTKDSLALADRCLLHAHTLCLRHPKTGERTMFTAPCEF 896
            MASTG+ RPGTSASLGAA VGEAGGKGKGVA EEMWLNGPFNAPVPPGPLE+LFVD+EIVVCNKPSDLLCVPGRIEKDSLATRAALELGHYRVDRMIVHRLDMATSGCVIMARTDAALKDLNRQFRERQVRKRYVA+VHGVL ADEGEVDLPLCRNRGCPPLHMVNFEHGKPSLTKWRVLDRAADRTRVELIPVSGRSHQLRLHMNAIGHPILGDHFYGT DSLALA RCLLHAHTLCLRHPKTGERTMFTAPCEF
Sbjct:    1 MASTGQVRPGTSASLGAAVVGEAGGKGKGVAAEEMWLNGPFNAPVPPGPLEILFVDEEIVVCNKPSDLLCVPGRIEKDSLATRAALELGHYRVDRMIVHRLDMATSGCVIMARTDAALKDLNRQFRERQVRKRYVAIVHGVLWADEGEVDLPLCRNRGCPPLHMVNFEHGKPSLTKWRVLDRAADRTRVELIPVSGRSHQLRLHMNAIGHPILGDHFYGTTDSLALAGRCLLHAHTLCLRHPKTGERTMFTAPCEF 256          
BLAST of mRNA_E_fasciculatus_S2_contig93.17352.1 vs.
Match: Pseudouridylate (synthase, 23S RNA-specific n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD05_9STRA)

HSP 1 Score: 225 bits (574), Expect = 3.190e-67
Identity = 119/232 (51.29%), Postives = 150/232 (64.66%), Query Frame = 3
Query:  216 VAPEEMWLNGPFNAPVPPGPLEVLFVDDEIVVCNKPSDLLCVPGRIEKDSLATRAALELGHYRVDRMIVHRLDMATSGCVIMARTDAALKDLNRQFRERQVRKRYVAMVHGVLSADEGEVDLPLCRNRGCPPLHMVNFEHGKPSLTKWRVLDR-----AADRTRVELIPVSGRSHQLRLHMNAIGHPILGDHFYGTKDSLALADRCLLHAHTLCLRHPKTGERTMFTAPCEF 896
            ++PEE W+          GP++V++ DD I+VCNKPS LL VPG   KD L +R A++ G  R+D+M+VHRLD ATSG V+ ARTD AL+ L+  FR R+V K Y A+V+G ++ D GEV  P+ ++   PPL +++   GKP  T W VL R      AD TRV L PV+GRSHQLRLHM  +GHPILGD  Y    + ALA RCLLHA TL  RHP TGE   F  P EF
Sbjct:    3 LSPEERWMR-------VAGPVDVVYSDDHIIVCNKPSGLLSVPGITLKDCLVSRVAVKFGQARIDKMVVHRLDQATSGLVLFARTDEALRALHEDFRLRRVSKCYEAVVYGSVAGDSGEVTEPMRKDMDNPPLQLIDHVQGKPCQTLWSVLSRETRGGGADATRVALTPVTGRSHQLRLHMQVLGHPILGDDLYAHAAARALAPRCLLHARTLRFRHPATGEDLSFEVPPEF 227          
BLAST of mRNA_E_fasciculatus_S2_contig93.17352.1 vs.
Match: Pseudouridine (synthase n=1 Tax=Motiliproteus coralliicola TaxID=2283196 RepID=A0A369WRJ6_9GAMM)

HSP 1 Score: 206 bits (525), Expect = 2.970e-60
Identity = 110/209 (52.63%), Postives = 145/209 (69.38%), Query Frame = 3
Query:  276 LEVLFVDDEIVVCNKPSDLLCVPGR--IEKDSLATRAALELGHYRVDRMIVHRLDMATSGCVIMARTDAALKDLNRQFRERQVRKRYVAMVHGVLSADEGEVDLPLCRNRGCPPLHMVNFEHGKPSLTKWRVLDRAADRTRVELIPVSGRSHQLRLHMNAIGHPILGDHFYGTKDSLALADRCLLHAHTLCLRHPKTGERTMFTAPCEF 896
            +EVL+ DD +V+  KP+DLL VPGR    +D L  R   E    R    IVHRLD ATSG +++A    + ++L+RQF +R+ RKRY+A+V G L   +G V+LPL  +    P  MV+ + GKP+LT++R+LD+A DR+RVELIP++GRSHQLR+HM A+GHPILGD FY T  +LA ADR  LHA  L +RHP +GER  FTAPC F
Sbjct:    2 IEVLYQDDSLVIAVKPADLLSVPGRGPENQDCLLHRLQSEFPTAR----IVHRLDCATSGVMVLALDADSHRELSRQFHDRETRKRYIAVVDGTLKQHQGRVELPLRCDWPNRPKQMVDHDQGKPALTEYRLLDQADDRSRVELIPITGRSHQLRVHMQALGHPILGDRFYATPSALAKADRLNLHAEQLGIRHPVSGERMEFTAPCPF 206          
BLAST of mRNA_E_fasciculatus_S2_contig93.17352.1 vs.
Match: Pseudouridine (synthase n=4 Tax=Zobellella denitrificans TaxID=347534 RepID=A0A291HLR0_9GAMM)

HSP 1 Score: 206 bits (523), Expect = 1.010e-59
Identity = 111/218 (50.92%), Postives = 146/218 (66.97%), Query Frame = 3
Query:  249 FNAPVPPGPLEVLFVDDEIVVCNKPSDLLCVPGR--IEKDSLATRAALELGHYRVDRMIVHRLDMATSGCVIMARTDAALKDLNRQFRERQVRKRYVAMVHGVLSADEGEVDLPLCRNRGCPPLHMVNFEHGKPSLTKWRVLDRAADRTRVELIPVSGRSHQLRLHMNAIGHPILGDHFYGTKDSLALADRCLLHAHTLCLRHPKTGERTMFTAPCEF 896
            ++ P+ P   EVL+ D+ ++V NKPS LL VPGR  I +DSL+ R A      +V    VHRLDMATSG ++MA    A ++L+RQFRER+  KRY A VHG L  D G +DLPLC +    P HMV+ EHGKP+LT WR L R  DR+ VEL P++GRSHQLR+HM ++GHPILGD+ Y + ++LA+A    LHA  L  RHP++ +   F+AP  F
Sbjct:    6 YDPPMDPQ-FEVLYQDNSLIVLNKPSGLLSVPGRELIHRDSLSYRVARVYPGVQV----VHRLDMATSGVIVMALHPKAHRELSRQFRERETAKRYYAWVHGRLEQDAGSIDLPLCCDWPNRPRHMVSLEHGKPALTHWRCLRREPDRSLVELTPITGRSHQLRVHMLSLGHPILGDNLYASGEALAMAPHLQLHAAWLAFRHPRSKQWLEFSAPAPF 218          
BLAST of mRNA_E_fasciculatus_S2_contig93.17352.1 vs.
Match: RluA (family pseudouridine synthase n=1 Tax=Kordiimonas gwangyangensis TaxID=288022 RepID=UPI000371F359)

HSP 1 Score: 204 bits (520), Expect = 2.540e-59
Identity = 109/210 (51.90%), Postives = 144/210 (68.57%), Query Frame = 3
Query:  273 PLEVLFVDDEIVVCNKPSDLLCVPGRIEK--DSLATRAALELGHYRVDRMIVHRLDMATSGCVIMARTDAALKDLNRQFRERQVRKRYVAMVHGVLSADEGEVDLPLCRNRGCPPLHMVNFEHGKPSLTKWRVLDRAADRTRVELIPVSGRSHQLRLHMNAIGHPILGDHFYGTKDSLALADRCLLHAHTLCLRHPKTGERTMFTAPCEF 896
            PL+++ VDD+I+V NKP+ LL VPGR E+  D LATRA  E    R    IVHRLDM TSG +IMAR   AL+ L RQF +R+  K Y A+++G L+ DEGEVDLPL  +    P H V+FE+GKP+ T+++V++R    TRV L PV+GRSHQLR+HM ++GH I+GD+ Y   ++  LADR  LHA  L + HP++GE   FTAP  F
Sbjct:   15 PLDIIHVDDDILVLNKPNGLLSVPGRTEEKFDCLATRAEAEFTGVR----IVHRLDMETSGVIIMARHMDALRHLGRQFEDRKTDKVYEALIYGNLARDEGEVDLPLLVDWPNRPKHRVDFENGKPAFTRYKVIERTEKTTRVALYPVTGRSHQLRVHMLSLGHAIIGDNLYAEGEAFTLADRLCLHARELTVTHPESGESLTFTAPVPF 220          
BLAST of mRNA_E_fasciculatus_S2_contig93.17352.1 vs.
Match: RNA (pseudouridine synthase n=1 Tax=Parvularcula marina TaxID=2292771 RepID=A0A371RL31_9PROT)

HSP 1 Score: 201 bits (512), Expect = 3.500e-58
Identity = 102/207 (49.28%), Postives = 136/207 (65.70%), Query Frame = 3
Query:  276 LEVLFVDDEIVVCNKPSDLLCVPGRIEKDSLATRAALELGHYRVDRMIVHRLDMATSGCVIMARTDAALKDLNRQFRERQVRKRYVAMVHGVLSADEGEVDLPLCRNRGCPPLHMVNFEHGKPSLTKWRVLDRAADRTRVELIPVSGRSHQLRLHMNAIGHPILGDHFYGTKDSLALADRCLLHAHTLCLRHPKTGERTMFTAPCEF 896
            L+VL+ DD ++V NK + LL VPG + +DSL TRAA   G+     ++ HRLDMATSG ++M R    L  +  QF +RQ  KRY+A+V G ++ D+G VDLP+  +    PL M+  E G+P++T W VL R  D+TR+ L P++GRSHQLRLHM  +GHPILGD +Y   ++ A + R LLHA  L L HP  GER  FTAPC F
Sbjct:   15 LDVLYGDDALIVLNKQAGLLSVPGNVSRDSLETRAAERFGN----TLVAHRLDMATSGVIVMPRGKENLAAVGLQFEKRQTEKRYIAVVWGDVAEDKGTVDLPIRCDWPNRPLQMICHERGRPAVTHWEVLTREGDKTRLALTPITGRSHQLRLHMKELGHPILGDEWYADGEARAASPRLLLHAEVLTLTHPANGERMSFTAPCPF 217          
BLAST of mRNA_E_fasciculatus_S2_contig93.17352.1 vs.
Match: Pseudouridine (synthase n=4 Tax=Oceanimonas TaxID=129577 RepID=A0A233RBH1_9GAMM)

HSP 1 Score: 201 bits (511), Expect = 5.580e-58
Identity = 108/218 (49.54%), Postives = 141/218 (64.68%), Query Frame = 3
Query:  249 FNAPVPPGPLEVLFVDDEIVVCNKPSDLLCVPGR--IEKDSLATRAALELGHYRVDRMIVHRLDMATSGCVIMARTDAALKDLNRQFRERQVRKRYVAMVHGVLSADEGEVDLPLCRNRGCPPLHMVNFEHGKPSLTKWRVLDRAADRTRVELIPVSGRSHQLRLHMNAIGHPILGDHFYGTKDSLALADRCLLHAHTLCLRHPKTGERTMFTAPCEF 896
            ++ PV P   ++L+ DD ++V NKPS LL VPGR  +  DSL+ R +      +V    VHRLDMATSG ++MA    A ++L+RQFRER+  KRY A VHG  S DEG +DLPLC +    P HMV+ EHGK +LT WR L R   R+ +EL P++GRSHQLR+HM ++GHPILGD+ Y   ++L +A    LHA  L  RHP+   R  FTAP  F
Sbjct:    6 YDPPVDPQ-FDILYQDDSLIVLNKPSGLLSVPGRDPVHFDSLSLRVSRVFPAVQV----VHRLDMATSGVIVMALNPKAHRELSRQFRERETEKRYYAWVHGQPSEDEGSIDLPLCCDWPNRPRHMVSHEHGKKALTHWRCLRREGQRSLMELTPITGRSHQLRVHMLSLGHPILGDNLYAEGEALTMAPHLQLHAAWLAFRHPRYKHRLEFTAPAPF 218          
BLAST of mRNA_E_fasciculatus_S2_contig93.17352.1 vs.
Match: Pseudouridine (synthase n=1 Tax=Zobellella taiwanensis TaxID=347535 RepID=A0A2P7QL36_9GAMM)

HSP 1 Score: 200 bits (509), Expect = 1.170e-57
Identity = 106/208 (50.96%), Postives = 139/208 (66.83%), Query Frame = 3
Query:  279 EVLFVDDEIVVCNKPSDLLCVPGR--IEKDSLATRAALELGHYRVDRMIVHRLDMATSGCVIMARTDAALKDLNRQFRERQVRKRYVAMVHGVLSADEGEVDLPLCRNRGCPPLHMVNFEHGKPSLTKWRVLDRAADRTRVELIPVSGRSHQLRLHMNAIGHPILGDHFYGTKDSLALADRCLLHAHTLCLRHPKTGERTMFTAPCEF 896
            EVL+ D+ ++V NKPS LL VPGR  + +DSL+ R A        D  +VHRLDMATSG ++MA    A ++L+RQFRER+  KRY A V+G  +AD G VDLPLC +    P HMV+ EHGKP+LT WR L R   R+ +EL P++GRSHQLR+HM ++GHPILGD+ Y + ++L +A +  LHA  L  RHP+      FTAP  F
Sbjct:   15 EVLYQDNSLIVLNKPSGLLSVPGREAVHRDSLSYRVA----RVYPDVQVVHRLDMATSGVIVMALHPKAHRELSRQFRERETEKRYYAWVYGSPAADAGSVDLPLCCDWPNRPRHMVSLEHGKPALTHWRCLRREPGRSLLELTPITGRSHQLRVHMLSLGHPILGDNLYASGEALTMAPQLQLHAAHLAFRHPRYRHWLEFTAPAPF 218          
BLAST of mRNA_E_fasciculatus_S2_contig93.17352.1 vs.
Match: bifunctional (tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA n=1 Tax=Oceanisphaera sp. DM8 TaxID=2818389 RepID=UPI001AA08F5F)

HSP 1 Score: 199 bits (505), Expect = 4.280e-57
Identity = 110/218 (50.46%), Postives = 139/218 (63.76%), Query Frame = 3
Query:  249 FNAPVPPGPLEVLFVDDEIVVCNKPSDLLCVPGR--IEKDSLATRAALELGHYRVDRMIVHRLDMATSGCVIMARTDAALKDLNRQFRERQVRKRYVAMVHGVLSADEGEVDLPLCRNRGCPPLHMVNFEHGKPSLTKWRVLDRAADRTRVELIPVSGRSHQLRLHMNAIGHPILGDHFYGTKDSLALADRCLLHAHTLCLRHPKTGERTMFTAPCEF 896
            +N P+ P   E+L+ DD I+V NKPS LL VPGR  +  DSLA R A           IVHRLDMATSG +++A    A  +L+RQFRER+  KRY A V+G  + D G VD+PLC +    P  MVN+E+GK +LT WR L R ADR+ VEL P++GRSHQLR+HM ++GH ILGD+ Y   ++L +A   LLHA  L   HP T E   FTAP  F
Sbjct:    6 YNPPMDPA-FEILYQDDSIIVLNKPSGLLSVPGRERVHHDSLALRVA----RVYPTAKIVHRLDMATSGVIVIALHAKAHSELSRQFRERETAKRYYAWVYGRPAEDAGSVDVPLCCDWPNRPRQMVNYEYGKAALTHWRCLRRLADRSLVELTPITGRSHQLRVHMKSLGHVILGDNLYAEGEALTMAPHLLLHASELAFYHPDTHEWLTFTAPAPF 218          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig93.17352.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
PseudoU_synth_29.840e-20094.67domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Pseudouridylate2.050e-17396.09synthases, 23S RNA-specific n=1 Tax=Ectocarpus sil... [more]
Pseudouridylate3.190e-6751.29synthase, 23S RNA-specific n=1 Tax=Tribonema minus... [more]
Pseudouridine2.970e-6052.63synthase n=1 Tax=Motiliproteus coralliicola TaxID=... [more]
Pseudouridine1.010e-5950.92synthase n=4 Tax=Zobellella denitrificans TaxID=34... [more]
RluA2.540e-5951.90family pseudouridine synthase n=1 Tax=Kordiimonas ... [more]
RNA3.500e-5849.28pseudouridine synthase n=1 Tax=Parvularcula marina... [more]
Pseudouridine5.580e-5849.54synthase n=4 Tax=Oceanimonas TaxID=129577 RepID=A0... [more]
Pseudouridine1.170e-5750.96synthase n=1 Tax=Zobellella taiwanensis TaxID=3475... [more]
bifunctional4.280e-5750.46tRNA pseudouridine(32) synthase/23S rRNA pseudouri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig93contigE_fasciculatus_S2_contig93:34373..37860 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score503.4
Seed ortholog evalue6.1e-140
Seed eggNOG ortholog2880.D8LR37
Model size1566
Hectar predicted targeting categoryother localisation
Exons6
EggNOG free text desc.pseudouridine synthase activity
EggNOG OGsCOG0564@1,KOG1919@2759
Ec32 ortholog descriptionPseudouridine synthase, RsuA/RluB/C/D/E/F
Ec32 orthologEc-06_004490.1
Cds size771
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig93.17352.1prot_E_fasciculatus_S2_contig93.17352.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig93 35040..37732 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842579.6735542-UTR-E_fasciculatus_S2_contig93:34372..350391696842579.6735542-UTR-E_fasciculatus_S2_contig93:34372..35039Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig93 34373..35039 -
1696842579.758558-UTR-E_fasciculatus_S2_contig93:37732..378601696842579.758558-UTR-E_fasciculatus_S2_contig93:37732..37860Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig93 37733..37860 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842579.6887321-CDS-E_fasciculatus_S2_contig93:35039..352071696842579.6887321-CDS-E_fasciculatus_S2_contig93:35039..35207Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig93 35040..35207 -
1696842579.6987405-CDS-E_fasciculatus_S2_contig93:35457..355301696842579.6987405-CDS-E_fasciculatus_S2_contig93:35457..35530Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig93 35458..35530 -
1696842579.710482-CDS-E_fasciculatus_S2_contig93:35993..361511696842579.710482-CDS-E_fasciculatus_S2_contig93:35993..36151Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig93 35994..36151 -
1696842579.719601-CDS-E_fasciculatus_S2_contig93:36465..365891696842579.719601-CDS-E_fasciculatus_S2_contig93:36465..36589Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig93 36466..36589 -
1696842579.734119-CDS-E_fasciculatus_S2_contig93:37073..371711696842579.734119-CDS-E_fasciculatus_S2_contig93:37073..37171Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig93 37074..37171 -
1696842579.7497356-CDS-E_fasciculatus_S2_contig93:37582..377321696842579.7497356-CDS-E_fasciculatus_S2_contig93:37582..37732Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig93 37583..37732 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig93.17352.1

>prot_E_fasciculatus_S2_contig93.17352.1 ID=prot_E_fasciculatus_S2_contig93.17352.1|Name=mRNA_E_fasciculatus_S2_contig93.17352.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=257bp
MASTGKARPGTSASLGAAAVGEAGGKGKGVAPEEMWLNGPFNAPVPPGPL
EVLFVDDEIVVCNKPSDLLCVPGRIEKDSLATRAALELGHYRVDRMIVHR
LDMATSGCVIMARTDAALKDLNRQFRERQVRKRYVAMVHGVLSADEGEVD
LPLCRNRGCPPLHMVNFEHGKPSLTKWRVLDRAADRTRVELIPVSGRSHQ
LRLHMNAIGHPILGDHFYGTKDSLALADRCLLHAHTLCLRHPKTGERTMF
TAPCEF*
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mRNA from alignment at E_fasciculatus_S2_contig93:34373..37860-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig93.17352.1 ID=mRNA_E_fasciculatus_S2_contig93.17352.1|Name=mRNA_E_fasciculatus_S2_contig93.17352.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3488bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig93:34373..37860- (Ectocarpus fasciculatus EfasUO2)
CCCACGGCTTTCGATCAATCAGCAGTGGCAACGGCGGCACGCGCGTCCGT GCCGCTACGGCTGCCACGAATGAAGTAGGGGAGGTGCAGGTGGAGGAGAG GCCATGGCTTGGCAATGGCCCGGATCCGATGGCAAGCACAGGAAAGGCTC GACCAGGCACGAGCGCTTCCCTGGGAGCAGCTGCTGTAGGGGAGGCGGGA GGAAAGGGCAAGGGCGTCGCGCCCGAGGAGATGTGGCTCAACGGCCCGTT CAATGCTCCCGTGCCGCCAGGACCACTGGTGAGTGATGACCCGGGGAAGG GTACCTCGTAGACGAAGGCAGCGCTCTTCCAAAAAGTATCATCGCTGTCA GCTACCGATGGTGCGATCACCTCAAGTAGGTGGCCATGCTGTACACCATG TTCTGAAAAAACGCGGCGTGTCTTTCACCCACCGATCCCCGAAACGCGCG TTGCTACTGCAACATGTACCGCAATCATGCGATCTCGGTCACATGCTGAA AACGTATGCGCGACCCTGTTGCATTCGACCTCCGCAGTGCTGAGCTATGT GTCGAGGCATCACATCCAGCGCTTTTGGTTGGATTCTTGGTGCTGCCGCT GTTATTCTGCCTTCGAGAGCAACGTATGCATGCGTACTCCACATGTCCAT GCTACACGTGTTTCGAACTTACGCGCGCGGACGCCCCAGGAGGTTTTGTT CGTGGACGATGAGATAGTGGTCTGTAACAAGCCAAGTGATCTTCTCTGCG TTCCGGGGCGGATCGAGAAGGACTCTCTTGCCACAAGGTTCGTCCAGTTA GTTATATGTAGCTCGATTCTCGCGCATCAGACCTACAGCAGTATTAGGTG TGTACCGGATCCTTGTAATTGCCACGCCAATGTTGCGGACGAAGTGCTGT TTGTATGCTAATCATGCAAGAGCTCAAGATGGCGCTGCACATGGAATTTG TCGCCAGCGTCAAGGACGTGATTGTTTCAGTAGTAGTGGCAGATTTTTAG GTGCTGTGGGTGCAATCCGGAGTTTTTGGTACCAAACGAAGCCCAAGGAG GCCCAGCGAAACTTCTATCCCGAATCTTGGTGGACTGCCTTTGGAAATAG GGAGGCGTGAAGTGCTGAAAAAGGTCGTTCATTATATCGCTAATTTCCCA CTGACCACTCGTGCCTAGGCCTCTTTAGTCGAGTATATTCAAGTCGAATA ATGAAATGCACCGTTTGGGAGGCCGACGTTCCATTTTATGTTCCGGCTGT CACTTGCGGGTGCTTTTGAAGGGCTGCCCTGGAGCTGGGACACTACCGGG TGGACAGAATGATCGTGCACCGGCTAGACATGGCGACTTCTGGCTGCGTG ATCATGGCCCGCACGGATGCAGCTCTCAAGGACCTCAACCGGCAGGTGTA CTATTTTTTTATATATTCATGGGAAGTCGGTTGTGAGAATGCCAAACTCC GCATCTTCTTCTGCACGCGGCGCAAGAGTGAGTCTCTCGTGTGGCCAAGG ACCTATTCCGTCGCGCGCACTGAGAAGTACGTTTGTTTTTGACCGAATCC CCATGATATCCACTTCCTTCTATCTTCAATTTTTGAATGCATGTGCTCTG TACGCGCCGCGTGTGGATGGATGCATCGTGTGCTGCTGACCGCGTGTGCT GCCACCTGTGTGTAAACCACCCCTCCGTCTGTCTTCTCCATTACCGCGTT GAATGCTAGTTTCGAGAGCGCCAAGTGCGGAAGCGCTACGTCGCGATGGT GCACGGTGTCCTCTCGGCGGACGAAGGGGAGGTCGACCTGCCGCTTTGCA GAAATAGGGGCTGCCCGCCGCTCCACATGGTCAATTTCGAGCACGGGAAG CCGTCGCTCACAAAATGGTAAGTGCGAGGAAGTCCCGCGATTGACAATAG TAGCGATTGTGCGATGAACGACGTGACAGACGGGGGAGGTTCATTGGTAC AGCTAACCTAGCATTACTAAAAAGTGGAGGTCCTTCGAGTCGTAGCTACA GATAATTTGGCGCACTGTATTAATCACTTGAGGAGTAATTGTGAGCTGCT CGCGTGGTCGCGCAGCACCTGTGAGAACCTCTGCCTGTGATGGATAGAGG TGCATGTTTTTACCGCCTTAGTTTTTCACGGGCTGTGTAACGCATGCGAT GGGATAGGACCTGGCTTCATCAACCACGTGGCAAACGCAAGATATAACGT GATGATGACCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC AACAATGCTTCCTATGCGTGACGACGGCGTTTCTCTGTGATGTGTTTGCT CTTCAACAACACGCATCCGACGTTCACAAGGCGAGTCCTGGATAGGGCTG CAGACCGGACGAGAGTGGAGCTCATTCCCGTATCGGGCCGTTCGCACCAA CTGGTGAGCCGGAGGAAGAGCGATTGACACCGCAGACTCATACACATATT TCCCGATATCGAACTTTTGTAGACGTGGTCGCCTCTGATGCCATGTTTCA CCCACCGTCTTTTTTTTCATGGCTGCTTCTTCCAACAAGGGCTACCTTGC GGGAAACCTTCTGGCCGAATTTTCGACACATCCCATGCCTACCAACCAGG AAGATGACTGGCGTCCCATCTTCGCTCTTCCCTCTTTCCGTCCTCCTGGA CAGCGACTTCATATGAATGCAATAGGTCATCCAATCCTGGGCGACCACTT CTACGGCACCAAGGACTCTCTCGCTCTCGCGGACCGGTGCCTGCTGCACG CGCACACGCTGTGCCTTAGACACCCGAAAACGGGGGAGAGGACCATGTTT ACCGCTCCTTGCGAATTTTGAACTTTGGAGCTTGAGCGCGGTTTGTTCGC CCAGGGTCCCCCTGACTTAAAGGGTGTGTGAAGGAAAGCAGCCCACCCAG GCCCCGTTGTTGTTGGTTTCCTGGTTGGGCTTGTACCTGGTGTTGTGTGC GTTCAACGTGGTGATACCTTCTGGTTGGGATTGTATTATTTTTCAAGTCC TACCCGAATGCCAACGGTTCCCGCAATTTGCGTGTGTGCAAGCTATGTAG TGTCGTCCGTGCTTCTTCCCGACGCATACTTGCGCGCATTTGTAGAGCTC GTGTACCGAATCGGCACTCCTGCTTCATGGTTTCGTCCGCTGCCGTTGGG AAATCGTCGGGGGCCTCTTCAGACTATGCAGGGTTCATAATTTCTACGCA CCGCTGTCCATACAAATACAACCAATTTGCACTCATCTCTCTTGCGTTGG TGTTGGGGCGTGCGTTGTCTCCGCTTAGTTCCCCTCCAAAGCTTAAGTTT ATCTCGACTTACAGCTGAAGGTACACCACGATTCATTCACTAGGAGGCAT CACACATACAACAATGACATCCATTATTTTATCACGCACCGATCGTAAGG AACAAACTTTGCGACAAGGATGCGAGAGTCATCAATTCGACAGCAAGTTT CTGCCAATTTGGGCTTTTCATTCCCTGATCGTTTGCTG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig93:34373..37860-

>mRNA_E_fasciculatus_S2_contig93.17352.1 ID=mRNA_E_fasciculatus_S2_contig93.17352.1|Name=mRNA_E_fasciculatus_S2_contig93.17352.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=771bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig93:34373..37860- (Ectocarpus fasciculatus EfasUO2)
ATGGCAAGCACAGGAAAGGCTCGACCAGGCACGAGCGCTTCCCTGGGAGC
AGCTGCTGTAGGGGAGGCGGGAGGAAAGGGCAAGGGCGTCGCGCCCGAGG
AGATGTGGCTCAACGGCCCGTTCAATGCTCCCGTGCCGCCAGGACCACTG
GAGGTTTTGTTCGTGGACGATGAGATAGTGGTCTGTAACAAGCCAAGTGA
TCTTCTCTGCGTTCCGGGGCGGATCGAGAAGGACTCTCTTGCCACAAGGG
CTGCCCTGGAGCTGGGACACTACCGGGTGGACAGAATGATCGTGCACCGG
CTAGACATGGCGACTTCTGGCTGCGTGATCATGGCCCGCACGGATGCAGC
TCTCAAGGACCTCAACCGGCAGTTTCGAGAGCGCCAAGTGCGGAAGCGCT
ACGTCGCGATGGTGCACGGTGTCCTCTCGGCGGACGAAGGGGAGGTCGAC
CTGCCGCTTTGCAGAAATAGGGGCTGCCCGCCGCTCCACATGGTCAATTT
CGAGCACGGGAAGCCGTCGCTCACAAAATGGCGAGTCCTGGATAGGGCTG
CAGACCGGACGAGAGTGGAGCTCATTCCCGTATCGGGCCGTTCGCACCAA
CTGCGACTTCATATGAATGCAATAGGTCATCCAATCCTGGGCGACCACTT
CTACGGCACCAAGGACTCTCTCGCTCTCGCGGACCGGTGCCTGCTGCACG
CGCACACGCTGTGCCTTAGACACCCGAAAACGGGGGAGAGGACCATGTTT
ACCGCTCCTTGCGAATTTTGA
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