mRNA_E_fasciculatus_S2_contig9260.17317.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9260.17317.1
Unique NamemRNA_E_fasciculatus_S2_contig9260.17317.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9260.17317.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZK6_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 2.640e-10
Identity = 31/49 (63.27%), Postives = 34/49 (69.39%), Query Frame = -2 
Query:  288 NEAKPGDFKFFFNHLSWPAGALQEQVWEGRGPVCRKKKAVTGPTPLLHD 434
            N+AKPGDFKFFFNHLSWPAGALQEQV +G   V R    V   T  + D
Sbjct:  133 NKAKPGDFKFFFNHLSWPAGALQEQVGKGLWKVVRLPNDVLLETKRMRD 181
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BLAST of mRNA_E_fasciculatus_S2_contig9260.17317.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYX8_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 7.870e-10
Identity = 31/49 (63.27%), Postives = 34/49 (69.39%), Query Frame = -2 
Query:  288 NEAKPGDFKFFFNHLSWPAGALQEQVWEGRGPVCRKKKAVTGPTPLLHD 434
            N+AKP DFKFFFNHLSWPAGALQEQV +G   V R  K V   T  + D
Sbjct:  194 NKAKPSDFKFFFNHLSWPAGALQEQVGKGLWKVVRLPKDVLLETKRMRD 242
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9260.17317.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized2.640e-1063.27protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized7.870e-1063.27protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9260contigE_fasciculatus_S2_contig9260:38..472 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size436
Hectar predicted targeting categoryother localisation
Exons1
Cds size435
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842576.110687-CDS-E_fasciculatus_S2_contig9260:37..4721696842576.110687-CDS-E_fasciculatus_S2_contig9260:37..472Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9260 38..472 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9260.17317.1prot_E_fasciculatus_S2_contig9260.17317.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9260 38..472 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9260.17317.1

>prot_E_fasciculatus_S2_contig9260.17317.1 ID=prot_E_fasciculatus_S2_contig9260.17317.1|Name=mRNA_E_fasciculatus_S2_contig9260.17317.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=145bp
MEISDKISISLFSGLCWTETPICNWGTSKRRFTQKWLTSKWVSSTPGLNK
NILRKTSTTHRSKCLPVSTAWEWGHITRRVRSGTAAPFVVIYLEPGSWSK
GVGPVTAFFLRHTGPLPSHTCSWRAPAGHERWLKKNLKSPGFASF
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mRNA from alignment at E_fasciculatus_S2_contig9260:38..472+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9260.17317.1 ID=mRNA_E_fasciculatus_S2_contig9260.17317.1|Name=mRNA_E_fasciculatus_S2_contig9260.17317.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=435bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9260:38..472+ (Ectocarpus fasciculatus EfasUO2)
ATGGAAATTTCGGACAAGATTTCTATATCGCTTTTTTCGGGATTGTGCTG
GACTGAAACCCCAATTTGCAATTGGGGAACTTCCAAGCGTCGCTTCACTC
AAAAATGGTTGACATCGAAATGGGTGTCATCAACTCCCGGGTTGAACAAA
AATATTCTCAGAAAGACATCAACCACACACAGATCCAAATGCCTGCCGGT
TTCCACAGCATGGGAGTGGGGGCACATCACGCGCCGCGTACGGAGCGGAA
CGGCTGCTCCTTTTGTAGTCATCTACTTGGAACCCGGGTCATGGAGCAAG
GGGGTCGGTCCTGTAACCGCTTTTTTTTTACGGCATACGGGGCCTCTGCC
CTCCCACACCTGCTCCTGGAGAGCACCCGCCGGCCATGAGAGATGGTTAA
AGAAAAACTTGAAGTCGCCGGGCTTTGCTTCGTTT
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9260:38..472+

>mRNA_E_fasciculatus_S2_contig9260.17317.1 ID=mRNA_E_fasciculatus_S2_contig9260.17317.1|Name=mRNA_E_fasciculatus_S2_contig9260.17317.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=435bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9260:38..472+ (Ectocarpus fasciculatus EfasUO2)
ATGGAAATTTCGGACAAGATTTCTATATCGCTTTTTTCGGGATTGTGCTG
GACTGAAACCCCAATTTGCAATTGGGGAACTTCCAAGCGTCGCTTCACTC
AAAAATGGTTGACATCGAAATGGGTGTCATCAACTCCCGGGTTGAACAAA
AATATTCTCAGAAAGACATCAACCACACACAGATCCAAATGCCTGCCGGT
TTCCACAGCATGGGAGTGGGGGCACATCACGCGCCGCGTACGGAGCGGAA
CGGCTGCTCCTTTTGTAGTCATCTACTTGGAACCCGGGTCATGGAGCAAG
GGGGTCGGTCCTGTAACCGCTTTTTTTTTACGGCATACGGGGCCTCTGCC
CTCCCACACCTGCTCCTGGAGAGCACCCGCCGGCCATGAGAGATGGTTAA
AGAAAAACTTGAAGTCGCCGGGCTTTGCTTCGTTT
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