mRNA_E_fasciculatus_S2_contig9211.17275.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9211.17275.1
Unique NamemRNA_E_fasciculatus_S2_contig9211.17275.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9211.17275.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K670_9PHAE)

HSP 1 Score: 319 bits (818), Expect = 9.200e-109
Identity = 168/183 (91.80%), Postives = 173/183 (94.54%), Query Frame = 1 
Query:    1 QVAVDREGVVREATFAAKRMAMGVDGAPLRSRTGRLLVHDCPCDTLVSLGSIATSECRGESLESLRNRLLFSPSAPPSFVRNLVRKLGQPTSAATCAQVVEAALTTALTDRPYSKPLAVYGGHGSHVAPGQGVGAVATASGPHGGXXXXXMEGGPLDGTLLDGEDDEDGLAEVDFRDQYDEEA 549
            QVAVDREGVVR+ATFAAKR+AMGVDGAPLRSRTGRLLVHDCPCDTLVSLGSIAT+ECRGESLESLRNRLLFSPSAPPSFVRNLVRKLGQPTSAATCAQVVEAALTTALTDRPYSKPLAVYGG GSHVAPGQG GAVATA+GPHGG     M+G PLDGTL DGE DEDGLAEVDFRDQYDEEA
Sbjct:   60 QVAVDREGVVRDATFAAKRLAMGVDGAPLRSRTGRLLVHDCPCDTLVSLGSIATTECRGESLESLRNRLLFSPSAPPSFVRNLVRKLGQPTSAATCAQVVEAALTTALTDRPYSKPLAVYGGQGSHVAPGQGTGAVATATGPHGGGGG--MDGVPLDGTLSDGEIDEDGLAEVDFRDQYDEEA 240
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BLAST of mRNA_E_fasciculatus_S2_contig9211.17275.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDD3_ECTSI)

HSP 1 Score: 189 bits (479), Expect = 2.430e-58
Identity = 95/99 (95.96%), Postives = 98/99 (98.99%), Query Frame = 1 
Query:    1 QVAVDREGVVREATFAAKRMAMGVDGAPLRSRTGRLLVHDCPCDTLVSLGSIATSECRGESLESLRNRLLFSPSAPPSFVRNLVRKLGQPTSAATCAQV 297
            QVAVDREGVVR+ATFAAKR+AMGVDGAPLRSRTGRLLVHDCPCDTLVSLGSIAT+ECR ESLESLRNRLLFSPSAPPSFVRNLVRKLGQPTSAATCAQV
Sbjct:   60 QVAVDREGVVRDATFAAKRLAMGVDGAPLRSRTGRLLVHDCPCDTLVSLGSIATTECRDESLESLRNRLLFSPSAPPSFVRNLVRKLGQPTSAATCAQV 158
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9211.17275.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized9.200e-10991.80protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.430e-5895.96protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9211contigE_fasciculatus_S2_contig9211:2724..6078 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start0
Model size552
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-25_001690.1
Cds size552
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842571.7570834-CDS-E_fasciculatus_S2_contig9211:2723..28721696842571.7570834-CDS-E_fasciculatus_S2_contig9211:2723..2872Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9211 2724..2872 +
1696842571.7682767-CDS-E_fasciculatus_S2_contig9211:4569..47141696842571.7682767-CDS-E_fasciculatus_S2_contig9211:4569..4714Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9211 4570..4714 +
1696842571.7864668-CDS-E_fasciculatus_S2_contig9211:5820..60781696842571.7864668-CDS-E_fasciculatus_S2_contig9211:5820..6078Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9211 5821..6078 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9211.17275.1prot_E_fasciculatus_S2_contig9211.17275.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9211 2724..6078 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9211.17275.1

>prot_E_fasciculatus_S2_contig9211.17275.1 ID=prot_E_fasciculatus_S2_contig9211.17275.1|Name=mRNA_E_fasciculatus_S2_contig9211.17275.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=184bp
QVAVDREGVVREATFAAKRMAMGVDGAPLRSRTGRLLVHDCPCDTLVSLG
SIATSECRGESLESLRNRLLFSPSAPPSFVRNLVRKLGQPTSAATCAQVV
EAALTTALTDRPYSKPLAVYGGHGSHVAPGQGVGAVATASGPHGGGGGGG
MEGGPLDGTLLDGEDDEDGLAEVDFRDQYDEEA*
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mRNA from alignment at E_fasciculatus_S2_contig9211:2724..6078+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9211.17275.1 ID=mRNA_E_fasciculatus_S2_contig9211.17275.1|Name=mRNA_E_fasciculatus_S2_contig9211.17275.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3355bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9211:2724..6078+ (Ectocarpus fasciculatus EfasUO2)
CAGGTAGCGGTGGACCGGGAGGGGGTCGTGAGGGAAGCGACGTTCGCGGC
GAAGCGGATGGCGATGGGGGTGGACGGGGCGCCTCTCCGGTCAAGGACAG
GCAGGCTGCTGGTGCACGACTGCCCTTGCGACACGCTGGTCTCCCTGGGG
TAAGCACACGACCCACTGACTGCGCCCGTGGGTGGTTGATAGGTAGAGCG
CTCGGAGCAGTACGTGTTTTGACAAAGATATCAAAGAGGTTGCCATTCTG
TTCGGAAGAGGTTGCCATTCTGTTCGCAAGAGGTTATCATTCTGTTCGGA
AGAGGTTGCCATTCTGTTCGGAAGAGGTTGTCATTCTGTTCGGAAGAGGT
TGTCATTCTGTTCGGAAGAGGTTGCCATTCTGTTCGGAAATATACGGACC
ATTCGGACACAAGTTGGATCGTCGCAACGGTCCCTATGATCCCGTACAGA
GTGGTTGTAGGTGGCAGCGGTTCCGTTGGCCGCGAGCTCTCGGCTTCAAC
TACCTGCACATACCTTTGCACAGAAATAGAGGTGGAAGAGCTCGACAAAG
GTAAAACGACTAGTTTCGTTCGTTCTTCAGTAGACCGGCGAGAAAGCGTA
CACGTCCAAAGAGGCAAAAATTACGAAAGCCAAGCGCGCTAACGAGCTGT
TGCCCGCTCGCTGCTGGCACGAATATGCCGTTTGCTTAGGTTTAGACCCT
AAAGAACTCAGGGATATCTCCGGTTGGTGCAATCGAAGGACCCTCTGCAG
AGGGGACGAACTTCACCGAATGATCTGTAGAACCTCACACCGCTGCTTCT
CGGCCGGATAATTTCCGGACACGCTGCAACCATCGGCGGTTGGGTCTGTT
AAGAGAGACGAGAGTGAAAGTGACGTCAGACATCCTCGAACCATGCTTCG
CGTGGAAGAGATACGAAACACCGGGCGTGGTGATGACTCGATCGATACCC
CCCTACCGTCAAACACCCTCATAGACTCACTCCAGCGTCGGGGGTGAGAT
TCGGTAGCATGACTGACAGGTCCGCCTCAGCGCTCCTGGCGTCGTCCTTG
CATTGCCTCTTCGATACTGCTGTCACCCAGTATTGTAACCACCTCGGGGA
ACTGTGGTGCGCGATTATATCCATTCTCGGTGATGATCTCTGGGTTTGCT
TCCACTATTTTGTTGTTCGTGCCGTCCTTCGTAGTGTCTTGGCGACGATG
GTAGCCTCGGTTGATTGGTAGGGAGTATACGCATGAGGGCTGAGCCGCTG
GATTCATGACAGCCTTGGCTGGTAAACCCCAGAAACTGAGGTGCAAAGAG
TGTAAAACACAAGTGCAATTGAAGGAGAGCCAATTATTCCCACCCACACT
GCTGTGTCTCTTCCACATGAAACACAGCGGAATCGTAACACAGGCAAATT
GGCACACGGCGTGCGTAGGGCACGAATCTCGCTATTGTTGTTGCGGGGAT
ACTCCGTTCTTGACCCCTTTTTTCTCGTACAGATGGACACAATTTCGCTT
GTTGCTGATTCCGTACGCCCTGCCAAGCTTCGTCAACGAATTGATTGATG
TATCACGTTTGTTTTTGGTTGCAGTCGAGGGGCTACTCCGTTCTTGACCT
CGCTATCTACATGCGGACACAACCACCTCACTTCTTACTGACTCTTTGTC
ATGTTTATTTGATCCGAATTATCTTTTAGTTGGTTGCTGTCGCGGGGCTA
CTCCGTTCTCGACCTCGCTATCTGCACATGGACACACAAACCCCCTTCCT
TACTGATTTCGTACTCCTTACTTAAAATGTCTTTCTCTCTTGATGACCAT
TGCCATCCCTTGTTTTTGTTCCGGGTTCTCTCTTTTGGGAGGCCAGGTCG
ATAGCCACCAGCGAGTGCCGGGGCGAGTCCCTCGAGTCGCTGCGTAACCG
CCTGCTCTTCTCCCCGAGCGCTCCCCCGTCATTTGTAAGAAACCTCGTCC
GAAAATTGGGCCAGCCGACATCCGCCGCTACTTGCGCCCAGGTGGGGAGT
ATTTTTTTGAAACGGAATACGAGTGAAGTTATTGACGGGTTAGGTGGAGG
AAGAGCAAACAGTGAAACATTGTTTACCTGGTTTAAGTTTAGATTTTCTA
CAATTTGTGTTGTTTTCTTGTTGAGAGAACAGTCTTTTTTAGATTGCCGA
ACATGTATGACGGTAAGAAAAACATACGGGCTCATTACTTTTGCAGTAAG
AACTGTTTTTTCGGTGTATAGGCGTAGAACAGACTCAAAGTTAGCCCCGG
CCGTATCCATCACGTTTGTGTCTCCATCCATTGCAAATATTCAACACACC
CCTTCGGCAGGGACGCTCTTCTCGAACCGATCGTCTTCAGTGACTTTACG
TACATTTTTTTTAAGAACTAAATACAGAGAATAGACCACAGAGTGCACAA
GCAGCAATTTCTCTCGAAACAATGTTTCGGTCCGGCCGGGGACTCCGCGG
CGGCGGCGGCGGCGGCGGCGGCGTTTTTTTTTTTTGCGTTTATGGGTTTG
CAGCCAGTGGGTTGCGCACTTTTCGAAACTGATCTTTGTGAACACCTGCG
CTTCACCTCGAGCCTTCAAACCGCTGCGTGGTATTTGTCCAGTTACTACC
ACCATCACACCAACCCGTCATTGGAACGAATAAAAGGTGTTCAAGGGGAG
TGGTTGGCGCCACACAAGGCTTTCGTGGTAGATCAAGCATTGCTACAATC
ATCCGTCGACGGAACTTGTCCGCCTGCCCAATGCTGTACTTTCTTCCTGT
GCACTTTCCCGGTCTCCCGGCTGGCAAAATCAATTCGTGCCTAGTCGCAC
GCAGGTGATCGGAGCCCCCCCCCCCTCCCTCTCCTACACATGTGCAACTC
ATGATCACCTAAGAAAAATCTTCCCACACGTTTTTTTGTTGCACCTCGTA
GCCCTGATGCCAAACGCAATAAACCCACCCTGTGCTGCCCTAACCCCCCT
CCCCACACACACACACAATGCTCCGTGCTCTCGAGGATGCGTGGTCAATG
GTCTAACCGCTAAGGCATGCAAGACATTAGAGTACCCCCCCCCCCCCCTG
CCTTCGCACTTAAATCAAAACACATGTACATCCCTCGGGTGTGGCAGGTG
GTAGAAGCAGCACTGACGACAGCGCTAACGGACCGCCCTTACAGCAAGCC
TCTCGCCGTGTACGGGGGGCACGGTAGCCACGTAGCCCCCGGGCAGGGGG
TGGGGGCGGTAGCGACGGCCTCGGGGCCCCACGGTGGCGGCGGCGGCGGC
GGGATGGAGGGGGGCCCCCTGGATGGGACTTTATTGGACGGGGAGGACGA
CGAGGACGGCCTTGCGGAGGTTGACTTCCGGGACCAATACGACGAGGAGG
CTTGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9211:2724..6078+

>mRNA_E_fasciculatus_S2_contig9211.17275.1 ID=mRNA_E_fasciculatus_S2_contig9211.17275.1|Name=mRNA_E_fasciculatus_S2_contig9211.17275.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=552bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9211:2724..6078+ (Ectocarpus fasciculatus EfasUO2)
CAGGTAGCGGTGGACCGGGAGGGGGTCGTGAGGGAAGCGACGTTCGCGGC
GAAGCGGATGGCGATGGGGGTGGACGGGGCGCCTCTCCGGTCAAGGACAG
GCAGGCTGCTGGTGCACGACTGCCCTTGCGACACGCTGGTCTCCCTGGGG
TCGATAGCCACCAGCGAGTGCCGGGGCGAGTCCCTCGAGTCGCTGCGTAA
CCGCCTGCTCTTCTCCCCGAGCGCTCCCCCGTCATTTGTAAGAAACCTCG
TCCGAAAATTGGGCCAGCCGACATCCGCCGCTACTTGCGCCCAGGTGGTA
GAAGCAGCACTGACGACAGCGCTAACGGACCGCCCTTACAGCAAGCCTCT
CGCCGTGTACGGGGGGCACGGTAGCCACGTAGCCCCCGGGCAGGGGGTGG
GGGCGGTAGCGACGGCCTCGGGGCCCCACGGTGGCGGCGGCGGCGGCGGG
ATGGAGGGGGGCCCCCTGGATGGGACTTTATTGGACGGGGAGGACGACGA
GGACGGCCTTGCGGAGGTTGACTTCCGGGACCAATACGACGAGGAGGCTT
GA
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