mRNA_E_fasciculatus_S2_contig921.17271.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig921.17271.1
Unique NamemRNA_E_fasciculatus_S2_contig921.17271.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig921.17271.1 vs.
Match: Hypothetical (leucine rich repeat calmodulin binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPS0_ECTSI)

HSP 1 Score: 166 bits (419), Expect = 1.990e-43
Identity = 88/93 (94.62%), Postives = 91/93 (97.85%), Query Frame = 1 
Query:  202 QSSVNKVGSHIDAMGLTAAFKGMDPSGVAQFDASSMVAWREKQTLERMKSEEIERAQDRFTDQEGLTSLDISGAQGVGDSGVAVLTAQCRRLQ 480
            +S++N VG HIDAMGLTAAFKGMDPSGVAQFDASSMVAWREKQTLERMKSEEIERAQDRFTDQEGLTSLDISGAQGVGDSGVAVLTAQCRRLQ
Sbjct:    8 KSNIN-VGCHIDAMGLTAAFKGMDPSGVAQFDASSMVAWREKQTLERMKSEEIERAQDRFTDQEGLTSLDISGAQGVGDSGVAVLTAQCRRLQ 99
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig921.17271.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Hypothetical1.990e-4394.62leucine rich repeat calmodulin binding protein n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig921contigE_fasciculatus_S2_contig921:236..2888 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score168.7
Seed ortholog evalue3.1e-39
Seed eggNOG ortholog2880.D8LPS0
Model size678
KEGG koko:K10268
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.modulation by host of viral RNA genome replication
EggNOG OGsKOG1947@1,KOG1947@2759,KOG4341@1,KOG4341@2759
Cds size678
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842571.38946-CDS-E_fasciculatus_S2_contig921:235..4541696842571.38946-CDS-E_fasciculatus_S2_contig921:235..454Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig921 236..454 +
1696842571.4015532-CDS-E_fasciculatus_S2_contig921:883..10361696842571.4015532-CDS-E_fasciculatus_S2_contig921:883..1036Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig921 884..1036 +
1696842571.4124086-CDS-E_fasciculatus_S2_contig921:2059..22131696842571.4124086-CDS-E_fasciculatus_S2_contig921:2059..2213Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig921 2060..2213 +
1696842571.4356854-CDS-E_fasciculatus_S2_contig921:2736..28881696842571.4356854-CDS-E_fasciculatus_S2_contig921:2736..2888Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig921 2737..2888 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig921.17271.1prot_E_fasciculatus_S2_contig921.17271.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig921 236..2888 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig921.17271.1

>prot_E_fasciculatus_S2_contig921.17271.1 ID=prot_E_fasciculatus_S2_contig921.17271.1|Name=mRNA_E_fasciculatus_S2_contig921.17271.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=226bp
VAESVKSAIPAYEHTTSLPYDSVPAEVCRARDGTKSIDLAAWSLLVDDAA
LRCIAAGDRDRIDKLARQSSVNKVGSHIDAMGLTAAFKGMDPSGVAQFDA
SSMVAWREKQTLERMKSEEIERAQDRFTDQEGLTSLDISGAQGVGDSGVA
VLTAQCRRLQSLSMSGAFRVTDVAIRSLAVNCTGLTRLNLSGCLGISGPG
LAAVGECCPKLVHLDLSDCKQASST*
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mRNA from alignment at E_fasciculatus_S2_contig921:236..2888+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig921.17271.1 ID=mRNA_E_fasciculatus_S2_contig921.17271.1|Name=mRNA_E_fasciculatus_S2_contig921.17271.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2653bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig921:236..2888+ (Ectocarpus fasciculatus EfasUO2)
GTAGCAGAAAGTGTCAAAAGCGCCATCCCAGCTTACGAGCACACCACAAG
CCTGCCGTACGACAGCGTCCCGGCAGAAGTATGCCGGGCTAGGGATGGGA
CCAAGTCCATTGACCTCGCGGCATGGTCGTTGCTCGTGGATGACGCCGCC
TTGAGATGCATAGCAGCGGGAGATCGGGACCGAATCGACAAGCTTGCCCG
CCAGAGCAGCGTTAACAAGGTAAATGCGTACCCGTCGCAATTGTCTCTGT
CTTCTTGAGACGCATCACCCGCAACACGGCGGGAAAATGTGGGTAGGCGA
CAGAGTTGTGGTCATGCCGTCGGGCTATTTGTCGGTACAGTTCTCCGTTG
CTCGTGCTTATCGTCGACGCTCTTCATCTGACCAAAATCTTGAGCATCTC
TCATGGAGAGGAATCTTGGACGCGAATGCATATAAACAGCACTGTGAAGA
TCAATATCAACACTGAGTGGGTCTAGCCCCTGGTATGCGAAGTCCGGCAT
AACCACGGCACCATGAATTACGACACGGGAGCAATATCATAATTCATTGT
AAACATCCCTGTCAACTGAACGGACCCCGAGAACTCACTCAAGCACTGGT
GCCACGATCAACAAACACGGACGAACATACCCTGCGGGGAACATGTAGGT
TGGTAGCCACATTGATGCGATGGGGCTCACAGCCGCGTTCAAAGGAATGG
ACCCTTCGGGGGTGGCCCAATTCGACGCTTCTTCCATGGTGGCCTGGAGG
GAAAAGCAGACCCTAGAGCGGATGAAGTCGGAGGAAATTGAGCGTGCCCA
GGTGATACGTCGGCGTCATGTGTATTGTACGCTTTCCTTTCTCCCAGCAC
CCTCCTCAAAACTCCATGAACCCTTAGCATTGGTGTGGATACGCCGTATG
CGCGGAACAGAGTGTCATTTTAGGGTTAAGAGTTTCGCCGTAGTGCGAAT
CCCCTCTCACTCTACCGTTGGGTGTCGAGATAAACCAGGCGTTCTTGATA
AAACACACCATCCATGGTCTGAATCATCTTTACTCGTAAGTTTGCCAGAA
ACCCCATGAAATAATGCATCTGGAGAATGCTACGTGTTTTATTCTGAAAT
AGCAGAGAGAGGTCGGTATCGTGTACGGTGATCTCTGCGCTGGAGCTACC
CTTTGTCTTGTTTGCTTTTTAGCGGGCGTAATTCATTAGGAAACACACAC
ACACACACACACACACACCTGCACAACTTTTCTCAACACAGCATATATTA
GATTCAGATGAACGTTCAAGATCTTGTCACGACTCTGTACTTGCACTTGG
CCGTGACATGCATTAAAAGATGGATATACCGCGCAGAGGAAAGCGAGGTT
GTGTCCTCCCTCGAATGATACCGAAATCTTTGAGCCAAAAGGCAGGGCGG
ACAAAAGTCTCCTTGCAGATAGATGCAAGAAATGTTGGCACGATGCTTGT
CATTGTGGCGCCCGGCAGAAGGAAGGAATGAAGTGCGATTGCTCTTTCTT
GTACAACGCCTCGTGTTGTTTCGAACAAGAGGAACTTGTCATAAGAGGCG
GGGACAAGACCCTGCCGGGCTACTCGTCTCTGTCTGGTCTATTTTCCACT
CCCAAGCGATTACAATAGTTTTTCAGAATTACCTCTTCTCGGTGTGCCGT
GCCCAAAACCCTCTCACTTACCCCATCACAACCACATGTAACCCCGATAG
AAGGTAGTGAGTTGCTTCGCTCTGCCACATTGTACTTACGACCAACAACT
TTTGATCACGTGCTGGTGCTCGCTGCAACAAAACCACCACGGATGGAATC
TGGCACGCCTGCAATGCTACACAGGACCGCTTCACGGACCAAGAAGGCCT
CACGTCCCTCGACATTTCAGGAGCGCAGGGGGTGGGAGACAGCGGGGTCG
CCGTGCTGACCGCACAGTGCCGCCGTCTGCAATCCTTGAGCATGTCCGGT
GCATTTCGGGTCACGGACGTTGCCATCCGTGAGGACTTTACCGCACCTTG
ATATTCGCTTGTGTTGGGCGAGGGGGGGAGAGGTCACGCATTACGTGCTG
AAGCCCTTTCGAACGATTTTACTGTTTGTTAGGCAGCTTTTCGTGTGATA
TCTTTGACGCTAGTTCAACATGTGCTCACCTTATTGTTCCAAATTGGTCG
GACTTGGCAAGCGGCAGGGTTGACTTGCACGTGCAAACAGTGTGAGCAAT
TGGTGATGGTAGTCAGAACCATGATATTCGCCAAGCTTCCGGGTTTCATT
GACCGGGTGCAGAAGAACTTTAATACACCAACGCTTTTGTAGCAATGCCG
ATCCGGAACGCTGCCTTCTTTACTAAACCCATCAACTACATGTCTGATCC
GTCCAGCAAACTTAGCGAATTATTGAGGGGTCCTTCGTTCTATGCTCCCA
TACCAAACAGCGTGGGGGGGTGTACTCGCTTGCCCTCTTGCTACATGCTC
GCCATGCAGATTGATCCGTCCTTGTTGTTCACATTTTCCCGTGTGTGTCA
GGTTCCCTTGCCGTGAATTGCACCGGCTTAACCCGGCTCAACCTCAGCGG
GTGCCTCGGGATCTCCGGACCTGGACTCGCGGCCGTGGGAGAGTGCTGCC
CGAAACTGGTGCACCTCGATCTATCCGATTGCAAGCAGGCGAGCAGCACG
TAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig921:236..2888+

>mRNA_E_fasciculatus_S2_contig921.17271.1 ID=mRNA_E_fasciculatus_S2_contig921.17271.1|Name=mRNA_E_fasciculatus_S2_contig921.17271.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=678bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig921:236..2888+ (Ectocarpus fasciculatus EfasUO2)
GTAGCAGAAAGTGTCAAAAGCGCCATCCCAGCTTACGAGCACACCACAAG
CCTGCCGTACGACAGCGTCCCGGCAGAAGTATGCCGGGCTAGGGATGGGA
CCAAGTCCATTGACCTCGCGGCATGGTCGTTGCTCGTGGATGACGCCGCC
TTGAGATGCATAGCAGCGGGAGATCGGGACCGAATCGACAAGCTTGCCCG
CCAGAGCAGCGTTAACAAGGTTGGTAGCCACATTGATGCGATGGGGCTCA
CAGCCGCGTTCAAAGGAATGGACCCTTCGGGGGTGGCCCAATTCGACGCT
TCTTCCATGGTGGCCTGGAGGGAAAAGCAGACCCTAGAGCGGATGAAGTC
GGAGGAAATTGAGCGTGCCCAGGACCGCTTCACGGACCAAGAAGGCCTCA
CGTCCCTCGACATTTCAGGAGCGCAGGGGGTGGGAGACAGCGGGGTCGCC
GTGCTGACCGCACAGTGCCGCCGTCTGCAATCCTTGAGCATGTCCGGTGC
ATTTCGGGTCACGGACGTTGCCATCCGTTCCCTTGCCGTGAATTGCACCG
GCTTAACCCGGCTCAACCTCAGCGGGTGCCTCGGGATCTCCGGACCTGGA
CTCGCGGCCGTGGGAGAGTGCTGCCCGAAACTGGTGCACCTCGATCTATC
CGATTGCAAGCAGGCGAGCAGCACGTAG
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