prot_E_fasciculatus_S2_contig921.17271.1 (polypeptide) Ectocarpus fasciculatus EfasUO2

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E_fasciculatus_S2_contig921.17271.1
Unique Nameprot_E_fasciculatus_S2_contig921.17271.1
Typepolypeptide
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Sequence length226
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig921.17271.1 vs. uniprot
Match: D8LPS0_ECTSI (Hypothetical leucine rich repeat calmodulin binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPS0_ECTSI)

HSP 1 Score: 166 bits (419), Expect = 1.990e-43
Identity = 88/93 (94.62%), Postives = 91/93 (97.85%), Query Frame = 0 
Query:   68 QSSVNKVGSHIDAMGLTAAFKGMDPSGVAQFDASSMVAWREKQTLERMKSEEIERAQDRFTDQEGLTSLDISGAQGVGDSGVAVLTAQCRRLQ 160
            +S++N VG HIDAMGLTAAFKGMDPSGVAQFDASSMVAWREKQTLERMKSEEIERAQDRFTDQEGLTSLDISGAQGVGDSGVAVLTAQCRRLQ
Sbjct:    8 KSNIN-VGCHIDAMGLTAAFKGMDPSGVAQFDASSMVAWREKQTLERMKSEEIERAQDRFTDQEGLTSLDISGAQGVGDSGVAVLTAQCRRLQ 99
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig921.17271.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LPS0_ECTSI1.990e-4394.62Hypothetical leucine rich repeat calmodulin bindin... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus EfasUO2
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006553Leucine-rich repeat, cysteine-containing subtypeSMARTSM00367LRR_CC_2coord: 182..207
e-value: 1.6
score: 17.8
coord: 208..224
e-value: 700.0
score: 0.1
coord: 130..155
e-value: 690.0
score: 0.2
coord: 156..181
e-value: 0.0013
score: 28.1
IPR001611Leucine-rich repeatPFAMPF13516LRR_6coord: 133..150
e-value: 0.39
score: 10.9
coord: 181..203
e-value: 0.05
score: 13.7
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 110..225
e-value: 4.8E-23
score: 83.2
NoneNo IPR availablePANTHERPTHR13382:SF6SCF E3 UBIQUITIN LIGASE COMPLEX F-BOX PROTEIN GRR1coord: 131..221
NoneNo IPR availablePANTHERPTHR13382MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR Bcoord: 131..221
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 132..221

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig921contigE_fasciculatus_S2_contig921:236..2888 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus EfasUO22022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig921.17271.1mRNA_E_fasciculatus_S2_contig921.17271.1Ectocarpus fasciculatus EfasUO2mRNAE_fasciculatus_S2_contig921 236..2888 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E_fasciculatus_S2_contig921.17271.1 ID=prot_E_fasciculatus_S2_contig921.17271.1|Name=mRNA_E_fasciculatus_S2_contig921.17271.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=226bp
VAESVKSAIPAYEHTTSLPYDSVPAEVCRARDGTKSIDLAAWSLLVDDAA
LRCIAAGDRDRIDKLARQSSVNKVGSHIDAMGLTAAFKGMDPSGVAQFDA
SSMVAWREKQTLERMKSEEIERAQDRFTDQEGLTSLDISGAQGVGDSGVA
VLTAQCRRLQSLSMSGAFRVTDVAIRSLAVNCTGLTRLNLSGCLGISGPG
LAAVGECCPKLVHLDLSDCKQASST*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf
IPR001611Leu-rich_rpt
IPR006553Leu-rich_rpt_Cys-con_subtyp