mRNA_E_fasciculatus_S2_contig904.17135.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig904.17135.1
Unique NamemRNA_E_fasciculatus_S2_contig904.17135.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig904.17135.1 vs.
Match: Flagellar (associated protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW60_ECTSI)

HSP 1 Score: 441 bits (1135), Expect = 8.890e-143
Identity = 226/240 (94.17%), Postives = 229/240 (95.42%), Query Frame = 1
Query:  187 GMQAQNLDQRKRIADQEASRGRLQKELYECVQHIQDPPALRAHVTAMYKSNVNVDLPRNEMDANVIHEYHRHKVSQLFITLACCRKDLLDVFDHAIPSPREYLESSLRYLHHKFVADVGGHRTENIKVMQDNMLLIKEINMQRAHNKAAKRVLEAQVNMLKRFGTSSKHRKAAGVVHSSTAVVGDQPETSHEEPASIIENNKATIASLRALVADLEGRIVSNRPYSREILPPMDGVNTVF 906
            GMQAQNLDQRKRIADQEASRGRLQKELYECVQHIQDPPALRAHVTAMYKSNVNVDLPRNEMDANVIHEYHRHKV QL+  LAC +   LDVFDHAIPSPREYLESSLRYLH KFVADVGGHRTENIKVMQDNMLLIKEINMQRAHNK AKRV EAQVNMLKRFGTSSKHRKAAGVVHSST VVGD+PETSHEEPASIIENNKATIASLRALVADLEGRIVSNRPYSREILPPMDGVNTVF
Sbjct:  988 GMQAQNLDQRKRIADQEASRGRLQKELYECVQHIQDPPALRAHVTAMYKSNVNVDLPRNEMDANVIHEYHRHKVGQLYHCLACRKWPFLDVFDHAIPSPREYLESSLRYLHRKFVADVGGHRTENIKVMQDNMLLIKEINMQRAHNKTAKRVFEAQVNMLKRFGTSSKHRKAAGVVHSSTGVVGDRPETSHEEPASIIENNKATIASLRALVADLEGRIVSNRPYSREILPPMDGVNTVF 1227          
BLAST of mRNA_E_fasciculatus_S2_contig904.17135.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDL6_9PHAE)

HSP 1 Score: 397 bits (1019), Expect = 2.480e-137
Identity = 215/266 (80.83%), Postives = 219/266 (82.33%), Query Frame = 1
Query:  106 MDRELEQFHNSNAQLDLLIGELREKLDGMQAQNLDQRKRIADQEASRGRLQKELYECVQHIQDPPALRAHVTAMYKSNVNVDLPRNEMDANVIHEYHRHKVSQLFITLACCRKDLLDVFDHAIPSPREYLESSLRYLHHKFVADVGGHRTENIKVMQDNMLLIKEINMQRAHNKAAKRVLEAQVNMLKRFGTSSKHRKAAGVVHSSTAVVGDQPETSHEEPASIIENNKATIASLRALVADLEGRIVSNRPYSREILPPMDGVNTV 903
            MDRELEQFHNSNAQLDLLIGELREKLDGMQAQNLDQRKRIADQEASRGRLQKELYECVQHIQDPPALRAHVTAMYKSNV VDLPRNEMDANVIHEYHRHK                           EYLESSLRYLHHKFVADVGGHRTENIKVMQDNMLLIKEIN QRAHNKAAKRVLE+Q                 GVV+SSTAVVGD+PETSHEEPASIIENNKA IASLRALVADLEGR+VSNRPYSREILPPMDGVNTV
Sbjct:    1 MDRELEQFHNSNAQLDLLIGELREKLDGMQAQNLDQRKRIADQEASRGRLQKELYECVQHIQDPPALRAHVTAMYKSNVTVDLPRNEMDANVIHEYHRHK---------------------------EYLESSLRYLHHKFVADVGGHRTENIKVMQDNMLLIKEINTQRAHNKAAKRVLESQXXXXXXXXXXXXXXXXXGVVYSSTAVVGDRPETSHEEPASIIENNKAKIASLRALVADLEGRLVSNRPYSREILPPMDGVNTV 239          
BLAST of mRNA_E_fasciculatus_S2_contig904.17135.1 vs.
Match: Hypothetical (protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FFD5_9STRA)

HSP 1 Score: 230 bits (587), Expect = 2.240e-71
Identity = 145/302 (48.01%), Postives = 179/302 (59.27%), Query Frame = 1
Query:    7 KFKFVLDFKIKELKRQIEPRETEIGSMKEQIKEMDRELEQFHNSNAQLDLLIGELREKLDGMQAQNLDQRKRIADQEASRGRLQKELYECVQHIQDPPALRAHVTAMYKSNVNVDLPRNEMDANVIHEYHRHKVSQLFITLACCRKDLLDVFDHAIPSPREYLESSLRYLHHKFVADVGGHRTENIKVMQDNMLLIKEINMQRAHNKAAKRVLEAQVNMLKRFGTSSKH---RKAAGVVHSSTAVVGDQPETSHEEPASIIENNKATIASLRALVADLEGRIVSN----RPYSREILPPMDG 891
            KFKFVLD+KIKELKRQIEPRETEI SMK QI       EQFH SNAQLDL+IGELR+KLD MQ   + QRKRI DQE+   R + EL+ECVQ IQ+P  LR  V  ++K +V+ ++P  EMD NV HEYHRHK                           +YLE +   L  KF  DV  H  EN++VM DNM LI+EIN QR  N+  K VL+ ++  L+R   +  H   R A G    STAV+           A+ +E+N+  I +LR+ V +LEGR+       RP SREILPPMDG
Sbjct:    1 KFKFVLDYKIKELKRQIEPRETEIASMKNQIXXXXXXXEQFHRSNAQLDLMIGELRKKLDSMQQTIVGQRKRIGDQESVVSRFKSELHECVQFIQEPERLRTCVAHLHKQHVHREVPHREMDPNVTHEYHRHK---------------------------DYLERTFTTLKEKFAMDVDSHSAENMRVMHDNMSLIREINKQREANRGTKGVLQTKIASLQRLRLAKSHQQLRSAGGA--GSTAVM-----------AAEMESNRTRIQALRSAVMELEGRLSQQQEEQRPISREILPPMDG 262          
BLAST of mRNA_E_fasciculatus_S2_contig904.17135.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNH7_9STRA)

HSP 1 Score: 232 bits (591), Expect = 2.820e-65
Identity = 155/347 (44.67%), Postives = 190/347 (54.76%), Query Frame = 1
Query:    1 LEKFKFVLDFKIKELKRQIEPRETEIGSMKEQIKEMDRELEQFHNSNAQLDLLIGELREKLDGMQAQNLDQRKRIADQEASRGRLQKELYECVQHIQDPPALRAHVTAMYKSNVNVDLPRNEMDANVIHEYHRHKVSQLFITLACCRKDLLDVFDHAIPSPREYLESSLRYLHHKFVADVGGHRTENIKVMQDNMLLIKEINMQRAHNKAAKRVLEAQ--------------------VNMLKRFGTSSKHRKAA-----GVVHSSTAVVGDQPE------------------------TSHEEPASIIENNKATIASLRALVADLEGRIVSNRPYSREILPPMDGV 894
            LEKFKFVLD+KIKELKRQIEPRETEI +MKEQIK MD ELEQFH+SNAQLD LIGELR KLD  QA  L QR+RIADQE+ R  LQKEL EC+Q+IQDP  LRA V   ++++V  + P N +D NV +EY RH                           R+YLE SL  L  +F  D   H+TEN + M++N+ LI++IN QR  N+  K  L+AQ                    VN LKR G  S  R A+       + ++ A  G  P                            E+    I  N+A I  LR L+  LEGR+VS R YS+EILPPMDG+
Sbjct: 1087 LEKFKFVLDYKIKELKRQIEPRETEIAAMKEQIKGMDGELEQFHSSNAQLDNLIGELRAKLDSTQALILQQRQRIADQESVRRGLQKELLECMQYIQDPVRLRAAVKTFHEAHVPPETPANAVDINVQYEYRRH---------------------------RQYLERSLSLLGERFAEDAAAHKTENARCMRENLALIQDINAQRDANRTTKHALQAQGXXXXXXXXXXXXXXXXXXXVNELKRRGFGSAQRSASLNTPRSPIGTAAATAGSTPRGGDPGXXXXXXXXXXXXXXXXXSREGEEDLMGQIGANRARIQELRDLIESLEGRMVSQRAYSKEILPPMDGL 1406          
BLAST of mRNA_E_fasciculatus_S2_contig904.17135.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XAN7_9STRA)

HSP 1 Score: 166 bits (421), Expect = 3.400e-46
Identity = 116/305 (38.03%), Postives = 160/305 (52.46%), Query Frame = 1
Query:    1 LEKFKFVLDFKIKELKRQIEPRETEIGSMKEQIKEMDRELEQFHNSNAQLDLLIGELREKLDGMQAQNLDQRKRIADQEASRGRLQKELYECVQHIQDPPALRAHVTAMYKSNVNVD----------LPRNEMDANVIHEYHRHKVSQLFITLACCRKDLLDVFDHAIPSPREYLESSLRYLHHKFVADVGGHRTENIKVMQDNMLLIKEINMQRAHNKAAKRVLEAQVNMLKRFGTSSKHRKAAGVVHSSTAVVGDQPETSHEEPASIIENNKATIASLRALVADLEGRIVSNRPYSREILPPM 885
            LEKFKFVLD+KIKELKR IEPRE EI  MK QIKEMDRELE FH SNAQLDLLIGE R++++ +Q      R+ ++DQ+    R + +L+ECV+H+Q P  L  HV  +Y   V  D             ++++A +  EY R K                           +YLE S++ L  K   D    + EN++   DNMLLI+EIN  R    AAK  L+ +   L         RKA+G  H   A +    + +  +P ++I   +A I  LR +V  LE ++V+      E+LPP+
Sbjct:   13 LEKFKFVLDYKIKELKRAIEPRENEIADMKTQIKEMDRELELFHKSNAQLDLLIGEQRQRINALQRAIASHRQLLSDQQTGVRRFRCDLHECVRHLQTPKDLALHVAQLYNKYVASDDGAGGVGSGAAAGSDVEAEIQLEYARQK---------------------------QYLEKSVQVLKRKHAVDAQAQQQENLRATSDNMLLIREINDLRGGLTAAKNNLQMERATLATAALGP--RKASGSAHGLAAAL----QQAGGDPDTLIARQRAEIEELRRVVKALEEKLVNGGSKPGEVLPPI 284          
BLAST of mRNA_E_fasciculatus_S2_contig904.17135.1 vs.
Match: UDENN (domain-containing protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418FL32_9STRA)

HSP 1 Score: 138 bits (348), Expect = 7.260e-33
Identity = 96/248 (38.71%), Postives = 127/248 (51.21%), Query Frame = 1
Query:    1 LEKFKFVLDFKIKELKRQIEPRETEIGSMKEQIKEMDRELEQFHNSNAQLDLLIGELREKLDGMQAQNLDQRKRIADQEASRGRLQKELYECVQHIQDPPALRAHVTAMYKSNVNVDLPRNEMDANVIHEYHRHKVSQLFITLACCRKDLLDVFDHAIPSPREYLESSLRYLHHKFVADVGGHRTENIKVMQDNMLLIKEINMQRAHNKAAKRVLEAQVNMLKRFGTSSKHRKAAGVVHSSTAVVGDQ 744
            LEKFKFVLD+KIKELKRQIEPRE EI  MK+         E FH SNAQLD++IGE R++LD MQ      RK I DQ++   R + +L++CVQ IQ+P  L   V  +Y+  V  D+   ++D ++ HEY R K                           EYLE S+  L  K+  DV  H+ +N     DN+ LI EIN  R     +K  L+    +L   GT     K +G+      VV +Q
Sbjct: 1943 LEKFKFVLDYKIKELKRQIEPRENEISDMKDXXXXXXXXXELFHKSNAQLDIMIGEQRKRLDKMQHDITRNRKVIGDQQSLIRRFRCDLHDCVQSIQNPKDLAQKVAILYQKYVTTDINVGDVDLDIQHEYTRQK---------------------------EYLEKSVEVLKRKYAHDVTAHQQDNNHARSDNLALIHEINELRTALNVSKAALQKDKAIL---GTREYFTKKSGIDDDVGKVVENQ 2160          
BLAST of mRNA_E_fasciculatus_S2_contig904.17135.1 vs.
Match: PREDICTED: (WD repeat domain 65like putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0VZZ4_9STRA)

HSP 1 Score: 137 bits (346), Expect = 1.240e-32
Identity = 103/296 (34.80%), Postives = 150/296 (50.68%), Query Frame = 1
Query:    7 KFKFVLDFKIKELKRQIEPRETEIGSMKEQIKEMDRELEQFHNSNAQLDLLIGELREKLDGMQAQNLDQRKRIADQEASRGRLQKELYECVQHIQDPPALRAHVTAMYKSNVNVDLPRNEMDANVIHEYHRHKVSQLFITLACCRKDLLDVFDHAIPSPREYLESSLRYLHHKFVADVGGHRTENIKVMQDNMLLIKEINMQRAHNKAAKRVLEAQVNMLKRFGTSSKHRKAAGVVHSSTAVVGDQPETSHEEPASIIENNKATIASLRALVADLEGRIVSNRPYSREILPPMDGV 894
            KFKFVLD+KIKELK QIEPRE  I  +K QI+EMDRELE FH SN QLD +IGE R++++ +Q + +  RK    QE    R Q +L++C+QHIQ P  L      +YK  V  ++  ++++  +  EY R K                           EYLE ++  L   +  +V  H  ++ +V   N+ LI+EIN  R+    AK  L+ + + +   G S  H    G+     AV   + + S   P  +IE     I  LR  V  +EG++   R +S  + PP+ GV
Sbjct: 1074 KFKFVLDYKIKELKLQIEPRENVITGLKNQIEEMDRELESFHISNTQLDGMIGEQRKQINLLQEEIVKIRKMSKRQEIWMQRFQFDLHQCIQHIQKPAQLNKEFEVLYKKYVIENVSHSDLEIQIQQEYTRQK---------------------------EYLEKTVHTLRQTYAEEVMTHENDHSRVTAQNLSLIQEINQLRSDLSDAKTQLQMEKSAVS--GGSLLH----GLKRKEQAVNRSKAKASMN-PKVVIEEQSNQIQDLRRAVQAMEGKLDETR-HSEALFPPIRGV 1334          
BLAST of mRNA_E_fasciculatus_S2_contig904.17135.1 vs.
Match: WD (repeat-containing protein 65 n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9BZF3_SYMMI)

HSP 1 Score: 127 bits (320), Expect = 3.840e-29
Identity = 87/250 (34.80%), Postives = 136/250 (54.40%), Query Frame = 1
Query:    1 LEKFKFVLDFKIKELKRQIEPRETEIGSMKEQIKEMDRELEQFHNSNAQLDLLIGELREKLDGMQAQNLDQRKRIADQEASRGRLQKELYECVQHIQDPPALRAHVTAMYKSNVNVDLPRNEMDANVIHEYHRHKVSQLFITLACCRKDLLDVFDHAIPSPREYLESSLRYLHHKFVADVGGHRTENIKVMQDNMLLIKEINMQRAHNKAAKRVLEAQ---VNMLKRFGTSSKHRKAAGVVHSSTAVVGD 741
            LEKFKFVLD+KI++LK QI+P+  +I +MK++I+ MD +LE +H  N QL + I +L+ K + +Q   + QRK++ D +    R + +L+ECVQ IQ+P  L+  V+A+YK  V   + + E+D+++  EY+R                            R+YLE S+  L  K + D   HR +N +V+Q+N+ LI EIN  R      KR  + Q   V+ LK    SS   K+   + + T  + D
Sbjct: 3093 LEKFKFVLDYKIRDLKAQIDPKNDKIAAMKKEIQAMDADLEGYHKKNTQLQVNIQQLKNKHNTLQDDIVSQRKKMTDCQTVVKRFKTDLHECVQFIQEPRLLKESVSALYKKYVPNGVKKQELDSDIQREYNRQ---------------------------RDYLEKSVENLKKKLLKDSDVHRQDNTRVLQENVQLIIEINNLRREIDYLKRERQQQRLHVSKLKSTSKSSASGKSEPDIQALTREIDD 3315          
BLAST of mRNA_E_fasciculatus_S2_contig904.17135.1 vs.
Match: WD (domain, G-beta repeat-containing protein n=2 Tax=Toxoplasma gondii TaxID=5811 RepID=A0A0F7V396_TOXGV)

HSP 1 Score: 127 bits (319), Expect = 4.400e-29
Identity = 86/264 (32.58%), Postives = 138/264 (52.27%), Query Frame = 1
Query:    1 LEKFKFVLDFKIKELKRQIEPRETEIGSMKEQIKEMDRELEQFHNSNAQLDLLIGELREKLDGMQAQNLDQRKRIADQEASRGRLQKELYECVQHIQDPPALRAHVTAMYKSNVNVDLPRNEMDANVIHEYHRHKVSQLFITLACCRKDLLDVFDHAIPSPREYLESSLRYLHHKFVADVGGHRTENIKVMQDNMLLIKEINMQRAHNKAAKRVLEAQVNMLKRFGTSSKHRKAAGVVHSSTAVVGDQPETSHEEPASIIENNK 792
            LEKFKFVL  KI+ELK  I+P++  I  M+ QI+ MD EL  +H  N    L +G+L+ K   +Q + +D+R+++A  E    R++ +LYECVQHIQDP  L+  +T +Y+  +  +L ++++D +++ E +R                            R+YLE S+  L  +   D   HR +NIK+MQ+N  LI EIN  R      +  LE Q + ++    +S + +      S  A+    P  +HEE A+ +E  +
Sbjct:  615 LEKFKFVLGHKIRELKAMIDPKDKTIADMQRQIQAMDAELVDYHRQNKLSSLELGQLKLKQRALQDEIVDRRQQLATAENQMKRMKNDLYECVQHIQDPKKLKDAITRLYRKYITNELAKDDVDFDILKEQNRQ---------------------------RDYLEKSVESLKRRLAKDSEVHRQDNIKIMQENASLICEINDLRREVNLLR--LERQESRVQGASQNSLNSRKKVEKDSGPALPRKTPLNTHEELANTVETQR 849          
BLAST of mRNA_E_fasciculatus_S2_contig904.17135.1 vs.
Match: WD (domain, G-beta repeat-containing protein n=14 Tax=Toxoplasma gondii TaxID=5811 RepID=S7UHX1_TOXGG)

HSP 1 Score: 127 bits (319), Expect = 4.700e-29
Identity = 86/264 (32.58%), Postives = 138/264 (52.27%), Query Frame = 1
Query:    1 LEKFKFVLDFKIKELKRQIEPRETEIGSMKEQIKEMDRELEQFHNSNAQLDLLIGELREKLDGMQAQNLDQRKRIADQEASRGRLQKELYECVQHIQDPPALRAHVTAMYKSNVNVDLPRNEMDANVIHEYHRHKVSQLFITLACCRKDLLDVFDHAIPSPREYLESSLRYLHHKFVADVGGHRTENIKVMQDNMLLIKEINMQRAHNKAAKRVLEAQVNMLKRFGTSSKHRKAAGVVHSSTAVVGDQPETSHEEPASIIENNK 792
            LEKFKFVL  KI+ELK  I+P++  I  M+ QI+ MD EL  +H  N    L +G+L+ K   +Q + +D+R+++A  E    R++ +LYECVQHIQDP  L+  +T +Y+  +  +L ++++D +++ E +R                            R+YLE S+  L  +   D   HR +NIK+MQ+N  LI EIN  R      +  LE Q + ++    +S + +      S  A+    P  +HEE A+ +E  +
Sbjct:  983 LEKFKFVLGHKIRELKAMIDPKDKTIADMQRQIQAMDAELVDYHRQNKLSSLELGQLKLKQRALQDEIVDRRQQLATAENQMKRMKNDLYECVQHIQDPKKLKDAITRLYRKYITNELAKDDVDFDILKEQNRQ---------------------------RDYLEKSVESLKRRLAKDSEVHRQDNIKIMQENASLICEINDLRREVNLLR--LERQESRVQGASQNSLNSRKKVEKDSGPALPRKTPLNTHEELANTVETQR 1217          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig904.17135.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Flagellar8.890e-14394.17associated protein n=1 Tax=Ectocarpus siliculosus ... [more]
Uncharacterized2.480e-13780.83protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Hypothetical2.240e-7148.01protein n=1 Tax=Florenciella parvula TaxID=236787 ... [more]
Uncharacterized2.820e-6544.67protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Uncharacterized3.400e-4638.03protein (Fragment) n=1 Tax=Nothophytophthora sp. C... [more]
UDENN7.260e-3338.71domain-containing protein n=4 Tax=Aphanomyces asta... [more]
PREDICTED:1.240e-3234.80WD repeat domain 65like putative n=1 Tax=Albugo la... [more]
WD3.840e-2934.80repeat-containing protein 65 n=1 Tax=Symbiodinium ... [more]
WD4.400e-2932.58domain, G-beta repeat-containing protein n=2 Tax=T... [more]
WD4.700e-2932.58domain, G-beta repeat-containing protein n=14 Tax=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig904contigE_fasciculatus_S2_contig904:19502..22787 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score443.7
Seed ortholog evalue6.7e-122
Seed eggNOG ortholog2880.D7FW60
Preferred nameWDR65
Model size909
Hectar predicted targeting categoryother localisation
GOsGO:0003008,GO:0007600,GO:0007605,GO:0008150,GO:0032501,GO:0050877,GO:0050954
Exons7
EggNOG free text desc.WD40 repeats
EggNOG OGs28M22@1,2QTIS@2759
Ec32 ortholog descriptionflagellar associated protein
Ec32 orthologEc-01_003510.3
Cds size909
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig904.17135.1prot_E_fasciculatus_S2_contig904.17135.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig904 19502..22787 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842558.5606663-CDS-E_fasciculatus_S2_contig904:19501..196271696842558.5606663-CDS-E_fasciculatus_S2_contig904:19501..19627Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig904 19502..19627 +
1696842558.5734718-CDS-E_fasciculatus_S2_contig904:19968..201001696842558.5734718-CDS-E_fasciculatus_S2_contig904:19968..20100Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig904 19969..20100 +
1696842558.5849621-CDS-E_fasciculatus_S2_contig904:20284..205121696842558.5849621-CDS-E_fasciculatus_S2_contig904:20284..20512Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig904 20285..20512 +
1696842558.5959752-CDS-E_fasciculatus_S2_contig904:21205..212861696842558.5959752-CDS-E_fasciculatus_S2_contig904:21205..21286Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig904 21206..21286 +
1696842558.6096609-CDS-E_fasciculatus_S2_contig904:21586..216731696842558.6096609-CDS-E_fasciculatus_S2_contig904:21586..21673Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig904 21587..21673 +
1696842558.630529-CDS-E_fasciculatus_S2_contig904:22157..222951696842558.630529-CDS-E_fasciculatus_S2_contig904:22157..22295Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig904 22158..22295 +
1696842558.6489768-CDS-E_fasciculatus_S2_contig904:22670..227871696842558.6489768-CDS-E_fasciculatus_S2_contig904:22670..22787Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig904 22671..22787 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig904.17135.1

>prot_E_fasciculatus_S2_contig904.17135.1 ID=prot_E_fasciculatus_S2_contig904.17135.1|Name=mRNA_E_fasciculatus_S2_contig904.17135.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=303bp
LEKFKFVLDFKIKELKRQIEPRETEIGSMKEQIKEMDRELEQFHNSNAQL
DLLIGELREKLDGMQAQNLDQRKRIADQEASRGRLQKELYECVQHIQDPP
ALRAHVTAMYKSNVNVDLPRNEMDANVIHEYHRHKVSQLFITLACCRKDL
LDVFDHAIPSPREYLESSLRYLHHKFVADVGGHRTENIKVMQDNMLLIKE
INMQRAHNKAAKRVLEAQVNMLKRFGTSSKHRKAAGVVHSSTAVVGDQPE
TSHEEPASIIENNKATIASLRALVADLEGRIVSNRPYSREILPPMDGVNT
VF*
back to top

mRNA from alignment at E_fasciculatus_S2_contig904:19502..22787+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig904.17135.1 ID=mRNA_E_fasciculatus_S2_contig904.17135.1|Name=mRNA_E_fasciculatus_S2_contig904.17135.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3286bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig904:19502..22787+ (Ectocarpus fasciculatus EfasUO2)
CTGGAAAAATTCAAATTTGTGCTCGACTTCAAAATCAAAGAGCTGAAGCG CCAGATTGAGCCTCGCGAGACAGAGATCGGTAGCATGAAGGAACAGATCA AGGAGATGGACCGGGAGCTCGAACAGGTGATCTTTGATACCAGGTTGATC GTCTGAAAAAGTACTGAAGAAAACGCCCGGTGCCCTCAGTAGTCTGCGGG CATCTCATGTAACAAGAGGTTCCCCGCCTGGACTTGGGCGCTAGCCACCT GTTACGTAGCCGAGGGTAGTAGGTGCATCTGTTCCAGGCAGAAAAAGGAA AAATGGACAAATCACTTGAGGAGATTGAGGGTTGTATGGTGCATCGGGAT ATTGATATTGGGCATATATTCAACACGATGGAAGCGGGAATGAATTAGGT TCTCATGTAGTGAGCAAGGCCACTATACACATACGGGAACGTCCGTCGCC CTCTCCGCTTCCTTTAGTTTCACAACAGTAATGCTCAACTAGACTTGCTT ATTGGGGAGCTTCGCGAAAAGCTCGACGGGATGCAGGCCCAGAATTTGGA CCAACGAAAACGGATTGCCGATCAAGAGGCTTCGCGCGGTCGGCTCCAGG TAAGTAGACAAGTTGTTGTAGTGCTATCAATCGACACCAATGTTTTCAAG TCCACTGCGTAGGTGAGGGAACACAGCAGGTTGTCAAAGTGTTGTTATTG CTGGTGATATGGTGTCACTCTACCTAGCACGTTCAGTGCCTTCACCTCCC GTCGTTTGGCGTGTTCGTCGGTTTCGAAATCAGAAAGAGCTATACGAGTG TGTCCAGCACATCCAAGATCCGCCAGCGTTGCGCGCACATGTCACCGCGA TGTACAAATCAAATGTCAATGTGGACCTGCCCAGGAATGAGATGGACGCT AACGTGATACACGAGTATCATCGACATAAGGTGAGCCAGCTCTTCATTAC CCTAGCATGTTGTAGAAAAGACCTTCTCGATGTATTCGACCATGCCATCC CCTCTCCTCGGGTGAATGCAACACACAAAACATGCACTATAATAGTGCCT GCAACATGAACCACAAACGCACAAGGTCTGAAGATGCGTGTGCCGTTCCG CACAGTATCCACACGAACGTGGAGTTCTTGATCGAAGATTCGGCTTGTCA GTGGAGGAAAAAACATGGATGTACTGAACATATCAAAACTCTTTCTCGCT TGTCGGTGGAGGAAAGACTGTAGGGCAAGTTCGAAAATCTTTCTCGCTTT TCTGCGTTCTGAAAAAATTCCGTGTCCCCCTGAGAATTGAGAAGGTGTTC GTTTGGGGATTATTTTTGAAGTTGTCGGTGTTCATCAGAAAGGGAGAACA TTTGCTTTCGATGCCTCGCAGCTCGAGTCAAAGAAATATTGTTTTTAAAT TACATCGCTCTGCGCATGGATGGGTTTTCGAATGATTCTCGAAATTCGCA GTAGACGCTGCAATTAAGTTGCGTGATTTGAGTGCGTGTTGTGGACGCAC GGTGTGGCCGATGGATGCTACTATTGTAGGCACTAGACTGCGGAAGCAGG CTTCATTGAATGTTCAGCGGCCGGAGCACGTTGGATACCCTGATCGTGCT GCTGCCAACATTGATCATTATCCCCAGAACCTTGACCGGTGAAGCCAGCG TCTCTATCACATGCCCTGCTAACCAATACAAGGGCAATCTCTTTGTTCGT CCAGGAATACTTGGAATCAAGCCTGCGCTACTTGCACCACAAGTTTGTGG CAGATGTTGGCGGGCACCGCACAGAAAATATCAAGGTGAGTAGCGTGAAA ATAAAGAGAGGTACACACGAGCCATGAATACGATTGTGGCGGAACCCGAA GTTCCTGTACCTTTGCATACAAGAAATACATTACTCTGCTTCGAATCTTA AGACCGCAGCGGCGCGAGTAGTTCTTCACCAGTTCGTTTGATAGTCCATC TCCAAATGTTAAAATCAATAGAAAAACCCTCTGCCACTGCTGCACTGAAC GACCCGGCTATTTTATGAGCAAACGTCTAGCTCTCCACACGCCATGGTAT CCCGTTGCAATTCAACCCTCTGCTTGTTACAATAGGTGATGCAGGACAAC ATGCTCCTGATCAAGGAAATCAATATGCAGCGAGCTCACAATAAGGCCGC CAAGCGAGTCTTAGAAGCCCAGGTGACAACAACATGGAAGTCGCAGCATT CGTTGTTGGGGTCCGCGTATCCGTTCTGGTGTATGCCGTTCAAGAATATA TGAATGGGTGTGCGGGTTGTTTTGGGGAACCACGGGTGTCACCACACGCA ATGACGAAGGGCGTAGACTAGGGACACATGCACTTGATAGCAAAAAATAG ACGGGAGCCCTGCTGTTGCAGCTGAACCTTTGTTTTCAGCTACCGAACAG ACATTCTGCACACTTTTCGGTGCGACATTTCGAGGATTGAATACAGACGT TAGCAGCCCGCTCATGCTGCTAAGTTTTGAGGCTCGGTTGGAAAAAAAAA ACATTTGGCGCAAGCAACCGGGGTCAATGGCTAGCGCCACCATAAAAAGT TACCTCCCCTCAATGGTGGCCACACGAAGGTTTCCCATCTTGTAAGCGAT ACGTTGCAGCGCGCTAATCCGACACACTGCGATACCGTCAACCCCTAATA TAAAAGGTGAATATGCTCAAACGATTTGGGACATCTTCAAAACACCGGAA AGCAGCTGGCGTTGTCCACTCGTCCACTGCCGTGGTGGGCGACCAGCCCG AAACCAGCCACGAGGAACCAGCATCTATCATTGAGAACAACAAGGTGACG TTATTGTTCGAGCTCCCGCAAGTAATTCATTGTTGAGGTCAGATGAGTTC GTGCGCATTCAGCGGCACGCTATGTGTTAGTTTCCTTTGTTCCGTGATAT TGCTCGTGATATTGCTTGGCAAACGTTCGTGCCAATGGCAAACCAAGGCC ACCGGCGGTCGCACTGACTGTAGATGCTTGTTCTATGCGGTTTCTAGCGT CCACCCAAATGCACGAAATTACCAATAAGCGTCTGTGCAGAGGGAGAGAC ATAAGTCTACATGCAACTTTATAATTCTGCACTCAGTTCGTTTGTCATCG CATACGATGGTAAGCATCGTTTACTCACGTTGGCACCACAACGCACCCCG AAACGATTATACCCTCCAGGCAACGATTGCGAGTCTCAGGGCGTTGGTTG CTGATCTCGAAGGGAGGATTGTGTCAAATCGACCCTACAGCAGGGAGATT CTCCCCCCAATGGATGGCGTCAACACCGTCTTCTAG
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig904:19502..22787+

>mRNA_E_fasciculatus_S2_contig904.17135.1 ID=mRNA_E_fasciculatus_S2_contig904.17135.1|Name=mRNA_E_fasciculatus_S2_contig904.17135.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=909bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig904:19502..22787+ (Ectocarpus fasciculatus EfasUO2)
CTGGAAAAATTCAAATTTGTGCTCGACTTCAAAATCAAAGAGCTGAAGCG
CCAGATTGAGCCTCGCGAGACAGAGATCGGTAGCATGAAGGAACAGATCA
AGGAGATGGACCGGGAGCTCGAACAGTTTCACAACAGTAATGCTCAACTA
GACTTGCTTATTGGGGAGCTTCGCGAAAAGCTCGACGGGATGCAGGCCCA
GAATTTGGACCAACGAAAACGGATTGCCGATCAAGAGGCTTCGCGCGGTC
GGCTCCAGAAAGAGCTATACGAGTGTGTCCAGCACATCCAAGATCCGCCA
GCGTTGCGCGCACATGTCACCGCGATGTACAAATCAAATGTCAATGTGGA
CCTGCCCAGGAATGAGATGGACGCTAACGTGATACACGAGTATCATCGAC
ATAAGGTGAGCCAGCTCTTCATTACCCTAGCATGTTGTAGAAAAGACCTT
CTCGATGTATTCGACCATGCCATCCCCTCTCCTCGGGAATACTTGGAATC
AAGCCTGCGCTACTTGCACCACAAGTTTGTGGCAGATGTTGGCGGGCACC
GCACAGAAAATATCAAGGTGATGCAGGACAACATGCTCCTGATCAAGGAA
ATCAATATGCAGCGAGCTCACAATAAGGCCGCCAAGCGAGTCTTAGAAGC
CCAGGTGAATATGCTCAAACGATTTGGGACATCTTCAAAACACCGGAAAG
CAGCTGGCGTTGTCCACTCGTCCACTGCCGTGGTGGGCGACCAGCCCGAA
ACCAGCCACGAGGAACCAGCATCTATCATTGAGAACAACAAGGCAACGAT
TGCGAGTCTCAGGGCGTTGGTTGCTGATCTCGAAGGGAGGATTGTGTCAA
ATCGACCCTACAGCAGGGAGATTCTCCCCCCAATGGATGGCGTCAACACC
GTCTTCTAG
back to top