mRNA_E_fasciculatus_S2_contig9037.17129.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9037.17129.1
Unique NamemRNA_E_fasciculatus_S2_contig9037.17129.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9037.17129.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQM0_ECTSI)

HSP 1 Score: 243 bits (621), Expect = 3.440e-78
Identity = 121/151 (80.13%), Postives = 129/151 (85.43%), Query Frame = 3 
Query:    3 MQQQYPGQQPQAAAIPPVGMPAMMPATPGSMNMGTPGTVFPNGQFVPNAAPAQMSILXXXXXXXXXXXXXXXAASPGFPVQAQPPGVEPNLAPVITREQQEFVGVPPGMTRESMAPGYDPRLKKQRRVFDPRYSFKDSFGNSRNKSCCTIS 455
            +QQ+YPGQQPQ+AAIPPVG+PAMMPATPGSMNMGTPGTV PNGQFVPNA+PAQMS+L               A +PGFPV  QPPGV PN+ PVITREQQE VGVPPGMTRESMAPGYDPRLKKQRRVFDPRYSFKDSFGNSRNKSCCTIS
Sbjct:  125 VQQRYPGQQPQSAAIPPVGIPAMMPATPGSMNMGTPGTVLPNGQFVPNASPAQMSVLPNGQVMAPPAGGGMTAGAPGFPVHTQPPGVGPNMGPVITREQQEIVGVPPGMTRESMAPGYDPRLKKQRRVFDPRYSFKDSFGNSRNKSCCTIS 275
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BLAST of mRNA_E_fasciculatus_S2_contig9037.17129.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LQM1_9PHAE)

HSP 1 Score: 202 bits (515), Expect = 3.640e-64
Identity = 100/128 (78.12%), Postives = 105/128 (82.03%), Query Frame = 3 
Query:   72 MPATPGSMNMGTPGTVFPNGQFVPNAAPAQMSILXXXXXXXXXXXXXXXAASPGFPVQAQPPGVEPNLAPVITREQQEFVGVPPGMTRESMAPGYDPRLKKQRRVFDPRYSFKDSFGNSRNKSCCTIS 455
            M ATPGSMNMGTPGTV PNGQFVPNA PAQMS+L               AA+ GFPV  QPPGVEPNL PVITREQQ+ VGVPPGMTRESMAPGYDPRLKKQRRVFDPRYSFKDSFGNSRN+SCCT+S
Sbjct:    1 MSATPGSMNMGTPGTVLPNGQFVPNATPAQMSVLPNGQVMAPSAAGGMTAAAAGFPVHTQPPGVEPNLGPVITREQQQVVGVPPGMTRESMAPGYDPRLKKQRRVFDPRYSFKDSFGNSRNRSCCTVS 128
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9037.17129.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized3.440e-7880.13protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized3.640e-6478.13protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9037contigE_fasciculatus_S2_contig9037:1682..2257 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size576
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-10_006160.1
Cds size456
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842557.8202012-UTR-E_fasciculatus_S2_contig9037:1681..16831696842557.8202012-UTR-E_fasciculatus_S2_contig9037:1681..1683Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9037 1682..1683 +
1696842557.8462489-UTR-E_fasciculatus_S2_contig9037:2139..22571696842557.8462489-UTR-E_fasciculatus_S2_contig9037:2139..2257Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9037 2140..2257 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842557.8349094-CDS-E_fasciculatus_S2_contig9037:1683..21391696842557.8349094-CDS-E_fasciculatus_S2_contig9037:1683..2139Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9037 1684..2139 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9037.17129.1prot_E_fasciculatus_S2_contig9037.17129.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9037 1684..2139 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9037.17129.1

>prot_E_fasciculatus_S2_contig9037.17129.1 ID=prot_E_fasciculatus_S2_contig9037.17129.1|Name=mRNA_E_fasciculatus_S2_contig9037.17129.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=152bp
MQQQYPGQQPQAAAIPPVGMPAMMPATPGSMNMGTPGTVFPNGQFVPNAA
PAQMSILPNGQVIPTPPSGSMTAASPGFPVQAQPPGVEPNLAPVITREQQ
EFVGVPPGMTRESMAPGYDPRLKKQRRVFDPRYSFKDSFGNSRNKSCCTI
S*
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mRNA from alignment at E_fasciculatus_S2_contig9037:1682..2257+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9037.17129.1 ID=mRNA_E_fasciculatus_S2_contig9037.17129.1|Name=mRNA_E_fasciculatus_S2_contig9037.17129.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=576bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9037:1682..2257+ (Ectocarpus fasciculatus EfasUO2)
AGATGCAGCAGCAGTATCCAGGCCAGCAGCCCCAAGCCGCGGCGATTCCT
CCCGTCGGTATGCCCGCCATGATGCCGGCCACCCCGGGGTCCATGAACAT
GGGTACCCCGGGCACCGTCTTCCCGAACGGTCAGTTCGTGCCAAACGCGG
CCCCCGCCCAGATGAGTATCCTACCAAACGGCCAGGTGATACCAACCCCC
CCCAGCGGCAGCATGACGGCAGCGTCGCCTGGGTTTCCAGTCCAAGCCCA
ACCCCCGGGGGTAGAGCCGAACTTGGCGCCGGTGATCACGCGAGAACAGC
AGGAGTTTGTGGGGGTGCCGCCGGGGATGACTCGAGAGAGCATGGCGCCT
GGGTACGACCCGCGGCTCAAGAAGCAGCGAAGGGTGTTCGATCCTCGGTA
CTCCTTCAAGGACTCCTTCGGGAACAGCAGAAACAAGAGCTGCTGCACAA
TATCCTAAGCGGCAGTTGTGGGTAGTGCACAGTACCAATTTAGCTGCTAC
TGTAGGTAAGCACGATATCTTAGCTGCTATATTGTAGGTAATGCAAGATA
TCCTGGCTGCCGTAGCCAACGAGTCG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9037:1682..2257+

>mRNA_E_fasciculatus_S2_contig9037.17129.1 ID=mRNA_E_fasciculatus_S2_contig9037.17129.1|Name=mRNA_E_fasciculatus_S2_contig9037.17129.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=456bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9037:1682..2257+ (Ectocarpus fasciculatus EfasUO2)
ATGCAGCAGCAGTATCCAGGCCAGCAGCCCCAAGCCGCGGCGATTCCTCC
CGTCGGTATGCCCGCCATGATGCCGGCCACCCCGGGGTCCATGAACATGG
GTACCCCGGGCACCGTCTTCCCGAACGGTCAGTTCGTGCCAAACGCGGCC
CCCGCCCAGATGAGTATCCTACCAAACGGCCAGGTGATACCAACCCCCCC
CAGCGGCAGCATGACGGCAGCGTCGCCTGGGTTTCCAGTCCAAGCCCAAC
CCCCGGGGGTAGAGCCGAACTTGGCGCCGGTGATCACGCGAGAACAGCAG
GAGTTTGTGGGGGTGCCGCCGGGGATGACTCGAGAGAGCATGGCGCCTGG
GTACGACCCGCGGCTCAAGAAGCAGCGAAGGGTGTTCGATCCTCGGTACT
CCTTCAAGGACTCCTTCGGGAACAGCAGAAACAAGAGCTGCTGCACAATA
TCCTAA
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