mRNA_E_fasciculatus_S2_contig9020.17117.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E_fasciculatus_S2_contig9020.17117.1
Unique Name	mRNA_E_fasciculatus_S2_contig9020.17117.1
Type	mRNA
Organism	Ectocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)

Homology

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BLAST of mRNA_E_fasciculatus_S2_contig9020.17117.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU18_ECTSI)

HSP 1 Score: 171 bits (432), Expect = 6.150e-51
Identity = 78/98 (79.59%), Postives = 86/98 (87.76%), Query Frame = 1

Query:    1 MQENAYLSDFFGCVGCLPLTTPSHIRGAMVRMMTGPTAQQRLGALHDSPEQGQFGAVFTEDGITAGNQCSTGPSACTFWCAVGVGALVKGSPVESVRR 294
            MQENA+L+DFFGCVG LPLTTPSH+RGAMVRMMT  TAQQ+LGALHDSPEQGQFGA+F EDGIT GNQ  TGPS CTFWCAVGVGA++KG   ESV +
Sbjct:   74 MQENAFLNDFFGCVGLLPLTTPSHVRGAMVRMMTRSTAQQQLGALHDSPEQGQFGAIFAEDGITTGNQLLTGPSCCTFWCAVGVGAIMKGRTAESVAK 171

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BLAST of mRNA_E_fasciculatus_S2_contig9020.17117.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU19_ECTSI)

HSP 1 Score: 176 bits (446), Expect = 7.410e-51
Identity = 81/98 (82.65%), Postives = 88/98 (89.80%), Query Frame = 1

Query:    1 MQENAYLSDFFGCVGCLPLTTPSHIRGAMVRMMTGPTAQQRLGALHDSPEQGQFGAVFTEDGITAGNQCSTGPSACTFWCAVGVGALVKGSPVESVRR 294
            MQENA+LSDFFGCVG LPLTTPSHIRG MV+MMTGPT QQ+LGALHDS EQGQFGA+F+EDGIT GNQ  TGPS CTFWCAVGVGA++KGSPVESV  
Sbjct:   20 MQENAFLSDFFGCVGLLPLTTPSHIRGVMVKMMTGPTVQQQLGALHDSLEQGQFGAIFSEDGITTGNQLLTGPSCCTFWCAVGVGAVLKGSPVESVAN 117

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BLAST of mRNA_E_fasciculatus_S2_contig9020.17117.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU22_ECTSI)

HSP 1 Score: 165 bits (418), Expect = 3.830e-48
Identity = 78/98 (79.59%), Postives = 83/98 (84.69%), Query Frame = 1

Query:    1 MQENAYLSDFFGCVGCLPLTTPSHIRGAMVRMMTGPTAQQRLGALHDSPEQGQFGAVFTEDGITAGNQCSTGPSACTFWCAVGVGALVKGSPVESVRR 294
            MQEN +LSDFFGCVG LPLTT SHIRG M+RMM    AQ + GA HDSP+QGQFGA+FTEDGIT GNQ STGPSACTFWCAVGVGALVKGSPVESV  
Sbjct:    1 MQENVFLSDFFGCVGFLPLTTRSHIRGTMMRMMAHSAAQYQPGARHDSPDQGQFGAIFTEDGITTGNQLSTGPSACTFWCAVGVGALVKGSPVESVAN 98

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BLAST of mRNA_E_fasciculatus_S2_contig9020.17117.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU29_ECTSI)

HSP 1 Score: 161 bits (407), Expect = 9.380e-48
Identity = 76/96 (79.17%), Postives = 82/96 (85.42%), Query Frame = 1

Query:    1 MQENAYLSDFFGCVGCLPLTTPSHIRGAMVRMMTGPTAQQRLGALHDSPEQGQFGAVFTEDGITAGNQCSTGPSACTFWCAVGVGALVKGSPVESV 288
            MQENA LSDFFGC+G +PLTT SHIRGAMVRMMT  T   + GA HDSP QG FG++FTEDGIT GNQ STGPSACTFWCAVG+GALVKGSPVESV
Sbjct:   39 MQENACLSDFFGCIGFMPLTTRSHIRGAMVRMMTSSTPHHQPGAPHDSPAQGHFGSIFTEDGITPGNQLSTGPSACTFWCAVGLGALVKGSPVESV 134

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BLAST of mRNA_E_fasciculatus_S2_contig9020.17117.1 vs.
Match: Zn(2)-C6 (fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU27_ECTSI)

HSP 1 Score: 162 bits (411), Expect = 1.150e-46
Identity = 76/96 (79.17%), Postives = 83/96 (86.46%), Query Frame = 1

Query:    1 MQENAYLSDFFGCVGCLPLTTPSHIRGAMVRMMTGPTAQQRLGALHDSPEQGQFGAVFTEDGITAGNQCSTGPSACTFWCAVGVGALVKGSPVESV 288
            MQENA+LSDFFGCVG LPLTT SH+RGAMVRMM    AQ +L A HD+P+QGQFGA+F+EDGIT GNQ STGPSACTFWCAVGVGALVKG P ESV
Sbjct:  109 MQENAFLSDFFGCVGFLPLTTRSHVRGAMVRMMAHSAAQHQLRARHDTPDQGQFGAIFSEDGITTGNQLSTGPSACTFWCAVGVGALVKGRPAESV 204

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BLAST of mRNA_E_fasciculatus_S2_contig9020.17117.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU25_ECTSI)

HSP 1 Score: 160 bits (404), Expect = 4.410e-44
Identity = 77/98 (78.57%), Postives = 82/98 (83.67%), Query Frame = 1

Query:    1 MQENAYLSDFFGCVGCLPLTTPSHIRGAMVRMMTGPTAQQRLGALHDSPEQGQFGAVFTEDGITAGNQCSTGPSACTFWCAVGVGALVKGSPVESVRR 294
            MQEN +LSDFFGCVG LPLTTPSHIRG MVRMMT  TA  R  A +DS +QGQFGA+F+EDGIT GNQ S GPSACTFWCAVGVGALVKGSPVESV  
Sbjct:   39 MQENVFLSDFFGCVGFLPLTTPSHIRGEMVRMMTLSTAPHRPDASYDSLDQGQFGAIFSEDGITTGNQLSAGPSACTFWCAVGVGALVKGSPVESVAN 136

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BLAST of mRNA_E_fasciculatus_S2_contig9020.17117.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU24_ECTSI)

HSP 1 Score: 160 bits (404), Expect = 4.450e-44
Identity = 77/98 (78.57%), Postives = 82/98 (83.67%), Query Frame = 1

Query:    1 MQENAYLSDFFGCVGCLPLTTPSHIRGAMVRMMTGPTAQQRLGALHDSPEQGQFGAVFTEDGITAGNQCSTGPSACTFWCAVGVGALVKGSPVESVRR 294
            MQEN +LSDFFGCVG LPLTTPSHIRG MVRMMT  TA  R  A +DS +QGQFGA+F+EDGIT GNQ S GPSACTFWCAVGVGALVKGSPVESV  
Sbjct:   39 MQENTFLSDFFGCVGFLPLTTPSHIRGEMVRMMTLSTAPHRPDASYDSLDQGQFGAIFSEDGITTGNQLSAGPSACTFWCAVGVGALVKGSPVESVAN 136

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BLAST of mRNA_E_fasciculatus_S2_contig9020.17117.1 vs.
Match: Zn(2)-C6 (fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBJ1_9PHAE)

HSP 1 Score: 159 bits (401), Expect = 1.970e-43
Identity = 77/96 (80.21%), Postives = 82/96 (85.42%), Query Frame = 1

Query:    1 MQENAYLSDFFGCVGCLPLTTPSHIRGAMVRMMTGPTAQQRLGALHDSPEQGQFGAVFTEDGITAGNQCSTGPSACTFWCAVGVGALVKGSPVESV 288
            MQENA+LSDFFGCVG LPLTTPSHIRG MVRMMT  TA  +LGA +DSPEQ QF A+ TEDGIT G+Q STGPSACTFWCAVGVGALV GSPVE V
Sbjct:  112 MQENAFLSDFFGCVGFLPLTTPSHIRGEMVRMMTLSTAPHQLGASYDSPEQCQFDAILTEDGITTGSQLSTGPSACTFWCAVGVGALVNGSPVELV 207

[Close]

BLAST of mRNA_E_fasciculatus_S2_contig9020.17117.1 vs.
Match: Zn(2)-C6 (fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8E7_9PHAE)

HSP 1 Score: 154 bits (390), Expect = 7.540e-42
Identity = 73/98 (74.49%), Postives = 79/98 (80.61%), Query Frame = 1

Query:    1 MQENAYLSDFFGCVGCLPLTTPSHIRGAMVRMMTGPTAQQRLGALHDSPEQGQFGAVFTEDGITAGNQCSTGPSACTFWCAVGVGALVKGSPVESVRR 294
            MQENA+LSDFFGCVG +P T+ SHIRGAMVRMM   TAQ + GA H+SPEQ QFG  FTEDGIT GNQ  TGPS CTFWCAVG+GAL KGSPVESV  
Sbjct:  112 MQENAFLSDFFGCVGFMPFTSRSHIRGAMVRMMARSTAQHQPGARHNSPEQSQFGDTFTEDGITPGNQLLTGPSCCTFWCAVGMGALAKGSPVESVAN 209

[Close]

BLAST of mRNA_E_fasciculatus_S2_contig9020.17117.1 vs.
Match: Zn(2)-C6 (fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU17_ECTSI)

HSP 1 Score: 119 bits (298), Expect = 2.040e-29
Identity = 54/61 (88.52%), Postives = 58/61 (95.08%), Query Frame = 1

Query:    1 MQENAYLSDFFGCVGCLPLTTPSHIRGAMVRMMTGPTAQQRLGALHDSPEQGQFGAVFTED 183
            MQENA+L+DFFGCVG LPLTTPSHIRGAMVRMMTGPTAQ +LGALHDSP QGQFGA+FTED
Sbjct:  182 MQENAFLNDFFGCVGLLPLTTPSHIRGAMVRMMTGPTAQHQLGALHDSPAQGQFGAIFTED 242

The following BLAST results are available for this feature:

BLAST of mRNA_E_fasciculatus_S2_contig9020.17117.1 vs.

BLAST of mRNA_E_fasciculatus_S2_contig9020.17117.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
Uncharacterized	6.150e-51	79.59	protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ...	[more]
Uncharacterized	7.410e-51	82.65	protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ...	[more]
Uncharacterized	3.830e-48	79.59	protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ...	[more]
Uncharacterized	9.380e-48	79.17	protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ...	[more]
Zn(2)-C6	1.150e-46	79.17	fungal-type domain-containing protein n=1 Tax=Ecto...	[more]
Uncharacterized	4.410e-44	78.57	protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ...	[more]
Uncharacterized	4.450e-44	78.57	protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ...	[more]
Zn(2)-C6	1.970e-43	80.21	fungal-type domain-containing protein n=1 Tax=Ecto...	[more]
Zn(2)-C6	7.540e-42	74.49	fungal-type domain-containing protein n=1 Tax=Ecto...	[more]
Zn(2)-C6	2.040e-29	88.52	fungal-type domain-containing protein n=1 Tax=Ecto...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E_fasciculatus_S2_contig9020	contig	E_fasciculatus_S2_contig9020:5612..6107 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO2	2022-07-07

Properties


Property Name	Value
Stop	0
Start	1
Model size	306
Hectar predicted targeting category	other localisation
Exons	2
Cds size	306

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696842556.8141541-CDS-E_fasciculatus_S2_contig9020:5611..5679	1696842556.8141541-CDS-E_fasciculatus_S2_contig9020:5611..5679	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig9020 5612..5679 +
1696842556.8262327-CDS-E_fasciculatus_S2_contig9020:5869..6107	1696842556.8262327-CDS-E_fasciculatus_S2_contig9020:5869..6107	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig9020 5870..6107 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E_fasciculatus_S2_contig9020.17117.1	prot_E_fasciculatus_S2_contig9020.17117.1	Ectocarpus fasciculatus EfasUO2	polypeptide	E_fasciculatus_S2_contig9020 5612..6107 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E_fasciculatus_S2_contig9020:5612..6107+
coding sequence from alignment at E_fasciculatus_S2_contig9020:5612..6107+

protein sequence of mRNA_E_fasciculatus_S2_contig9020.17117.1

>prot_E_fasciculatus_S2_contig9020.17117.1 ID=prot_E_fasciculatus_S2_contig9020.17117.1|Name=mRNA_E_fasciculatus_S2_contig9020.17117.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=102bp
MQENAYLSDFFGCVGCLPLTTPSHIRGAMVRMMTGPTAQQRLGALHDSPE
QGQFGAVFTEDGITAGNQCSTGPSACTFWCAVGVGALVKGSPVESVRRSG
VF

mRNA from alignment at E_fasciculatus_S2_contig9020:5612..6107+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E_fasciculatus_S2_contig9020.17117.1 ID=mRNA_E_fasciculatus_S2_contig9020.17117.1|Name=mRNA_E_fasciculatus_S2_contig9020.17117.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=496bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9020:5612..6107+ (Ectocarpus fasciculatus EfasUO2)
ATGCAGGAGAACGCATACCTCAGCGACTTCTTCGGCTGCGTTGGCTGCCT
GCCACTCACCACCCCAAGGTGCAGATCTAGCTTTTGATGTCATACACGAA
AGGGCGCACCGCCGTCGAGAGTACCCCGTATTGTCCCGTATGTTGTCAAT
GGAGTGCTGCCGAGGGAGGGAATAGGATTCTTCGGAGCGATCGCAGGTCG
TACCCTTACAGTCAATCGTCCAAATGAAGATTTTCGTGCGATTCGCTGTT
GCCGCCAGTCACATTCGTGGGGCGATGGTGAGAATGATGACCGGCCCAAC
TGCCCAACAACGGCTGGGTGCTCTGCACGACTCCCCCGAGCAAGGCCAGT
TCGGTGCCGTCTTCACCGAGGACGGCATCACCGCGGGGAATCAGTGCTCG
ACGGGTCCCTCCGCTTGCACATTTTGGTGTGCAGTTGGTGTGGGGGCTCT
TGTGAAGGGAAGCCCTGTTGAATCGGTGAGAAGAAGTGGCGTGTTT

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9020:5612..6107+

>mRNA_E_fasciculatus_S2_contig9020.17117.1 ID=mRNA_E_fasciculatus_S2_contig9020.17117.1|Name=mRNA_E_fasciculatus_S2_contig9020.17117.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=306bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9020:5612..6107+ (Ectocarpus fasciculatus EfasUO2)
ATGCAGGAGAACGCATACCTCAGCGACTTCTTCGGCTGCGTTGGCTGCCT
GCCACTCACCACCCCAAGTCACATTCGTGGGGCGATGGTGAGAATGATGA
CCGGCCCAACTGCCCAACAACGGCTGGGTGCTCTGCACGACTCCCCCGAG
CAAGGCCAGTTCGGTGCCGTCTTCACCGAGGACGGCATCACCGCGGGGAA
TCAGTGCTCGACGGGTCCCTCCGCTTGCACATTTTGGTGTGCAGTTGGTG
TGGGGGCTCTTGTGAAGGGAAGCCCTGTTGAATCGGTGAGAAGAAGTGGC
GTGTTT