mRNA_E_fasciculatus_S2_contig900.17099.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig900.17099.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCP3_9PHAE) HSP 1 Score: 547 bits (1409), Expect = 1.570e-187 Identity = 333/496 (67.14%), Postives = 339/496 (68.35%), Query Frame = 1
Query: 178 HQYRRSNSGVSLRSLRSVGSLNDMQHALVREPLSPASTVGQDDIQRLRSLLDTERSRRVAAETALSVGGGSVSSRRSGMCTPSSVXXXXXXXXTPKSRSSSYASFNKQAFARDLDPHGQEVLSPKSMPPGAGFSTPGRSRGGAGGAPSTPSRSYASLSNMHVGTPRAPRLSYSALHKFPSARAVEAHALEASSNGAKWARSAISRVGRGGGGGETKAEQLYDSLGQPQQSREQKQKMLLSVVTSILVHLFHCCRVEVRRRLRVRVDGLRAFVGGAEFVQLGGVTSGPGTSGPKASLXXXXXXXXXXXAPGGVMAQDTHELLYGELRRRHRTIAGLGRKDLVTLSARVLSRALKTEAKKEVGRMLVHQTWPTFEPVVRSYLALFVECALQEPQIEFDEAAGKEEPFDPEKHRPLASFSANASPRSGTTGGMGPGLQLDSDTLEXXXXXXXXXXXXXSDAGGNNNASPRPCCVVFPAVIASITRWPPSKAAKSGVILY 1665
HQYRRSNSGVSLRSLRSVGSLNDMQHALVREPLSPASTVGQDDIQRLRSLLDTERSRR+AAETALSVGGGSVSSRRSGMC G G GETKAEQLY SLGQPQQSREQKQKMLLSVVTSILVHLFHCCRVEVRRRLRVRVDGLRAFVG AEFVQLG + SGPGT GPKASL PGGVMAQDTHELLYGELRRRHRTIAGLGRKDLVTLSARVLSRALKTEAKKE+GRMLVHQTWPTFEPVVRSYLALFVECALQEPQIEFDEAAGKEEPFDPEKHRPLASFSA ASPR+ TTG GPGLQ+DSDTL XXXXXXXXXXXXX NNNASPRPCC+VFPAVIASITRWPPSKAAKSGVILY
Sbjct: 199 HQYRRSNSGVSLRSLRSVGSLNDMQHALVREPLSPASTVGQDDIQRLRSLLDTERSRRMAAETALSVGGGSVSSRRSGMCG-------------------------------------------------------------------------------------------------------------------------------GDGSGETKAEQLYSSLGQPQQSREQKQKMLLSVVTSILVHLFHCCRVEVRRRLRVRVDGLRAFVGEAEFVQLGSIVSGPGTGGPKASLAAAAGAAGA--TPGGVMAQDTHELLYGELRRRHRTIAGLGRKDLVTLSARVLSRALKTEAKKEIGRMLVHQTWPTFEPVVRSYLALFVECALQEPQIEFDEAAGKEEPFDPEKHRPLASFSAPASPRTSTTGERGPGLQIDSDTLNXXXXXXXXXXXXXXXXX-NNNASPRPCCIVFPAVIASITRWPPSKAAKSGVILY 564
BLAST of mRNA_E_fasciculatus_S2_contig900.17099.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEG1_ECTSI) HSP 1 Score: 306 bits (784), Expect = 6.360e-99 Identity = 165/184 (89.67%), Postives = 168/184 (91.30%), Query Frame = 1
Query: 1114 MAQDTHELLYGELRRRHRTIAGLGRKDLVTLSARVLSRALKTEAKKEVGRMLVHQTWPTFEPVVRSYLALFVECALQEPQIEFDEAAGKEEPFDPEKHRPLASFSANASPRSGTTGGMGPGLQLDSDTLEXXXXXXXXXXXXXSDAGGNNNASPRPCCVVFPAVIASITRWPPSKAAKSGVILY 1665
MAQDTHELLYGELRRRHRTIAGLGRKDLVTLSARVLSRALKTEAKKEVGRMLVHQTWPTFEPVVRSYLALFVECALQEPQIEFDEAAGKEEPFDPEKHRPLASFSA+ASPR GPGLQ+DSDTLE XXXXXXX SD NNN+SPRPCCVVFPAVIASITRWPPSKAAKSGVILY
Sbjct: 1 MAQDTHELLYGELRRRHRTIAGLGRKDLVTLSARVLSRALKTEAKKEVGRMLVHQTWPTFEPVVRSYLALFVECALQEPQIEFDEAAGKEEPFDPEKHRPLASFSADASPRE-----RGPGLQIDSDTLEPGFEXXXXXXXSGSDVANNNNSSPRPCCVVFPAVIASITRWPPSKAAKSGVILY 179
BLAST of mRNA_E_fasciculatus_S2_contig900.17099.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEG0_ECTSI) HSP 1 Score: 79.3 bits (194), Expect = 1.230e-14 Identity = 42/54 (77.78%), Postives = 44/54 (81.48%), Query Frame = -1
Query: 595 RRSLQGMRLHCPRTRKFVEGRVRESGGPGSPNMHV*EARVGARGRRGRPARAAP 756
R SLQ +RLH PR RK VEGRVRE GGPGSPN+HV EARVGARGRR PAR AP
Sbjct: 11 RGSLQSVRLHGPRARKLVEGRVREPGGPGSPNVHVGEARVGARGRRVPPARPAP 64
BLAST of mRNA_E_fasciculatus_S2_contig900.17099.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSP1_ECTSI) HSP 1 Score: 75.9 bits (185), Expect = 3.910e-11 Identity = 55/174 (31.61%), Postives = 86/174 (49.43%), Query Frame = 1
Query: 907 SILVHLFHCCRVEVRRRLRVRVDGLRAFVGGAEFVQLGGVTSGPGTSGPKASLXXXXXXXXXXXAPGGVMAQDTHELLYGELRRRHRTIAGLGRKDLVTLSARVLSRALKTEAKKEVGRMLVHQTWPTFEPVVRSYLALFVECALQEPQIEFDEAAGKEEPFDPEKHRPLASFS 1428
S+L + F CR EV+R L R+ L AF+G AE + L ++G + SL D +LY L R++RTI + L+ +L R + + + TWP+FE ++++YL +FVE ALQ+P I+F+++ G FDP +H LA +S
Sbjct: 192 SVLYNTFLVCREEVQRCLDERLQILSAFLGNAEPILL--------SAGDEKSL-------------------DPQYVLYECLCRKYRTIVSTEPDRMDELARLILQRCGEPADRGLANEITSGATWPSFEALMKNYLLVFVEMALQKPGIDFEDSLGDNVAFDPAEHCDLAPYS 338
BLAST of mRNA_E_fasciculatus_S2_contig900.17099.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSP0_ECTSI) HSP 1 Score: 71.6 bits (174), Expect = 1.640e-9 Identity = 54/180 (30.00%), Postives = 82/180 (45.56%), Query Frame = 1
Query: 889 LLSVVTSILVHLFHCCRVEVRRRLRVRVDGLRAFVGGAEFVQLGGVTSGPGTSGPKASLXXXXXXXXXXXAPGGVMAQDTHELLYGELRRRHRTIAGLGRKDLVTLSARVLSRALKTEAKKEVGRMLVHQTWPTFEPVVRSYLALFVECALQEPQIEFDEAAGKEEPFDPEKHRPLASFS 1428
L V S+L + F CR EV+R L R+ L AF+G E + L + G M DT +LY L + ++ I + L+ VL R + + +L TWP+FE ++++YL +FVE ALQ+P++EF++ G FD HR A +S
Sbjct: 332 LNGTVLSVLYNTFLVCREEVQRCLDERLQNLSAFLGNDEPILL---------------------------SAGDEMNLDTQYVLYECLCKDYQRIVPADPDRMDALAGVVLQRCGEPADRSLANEILSGATWPSFEALMKNYLLVFVEMALQKPRVEFEDNLGDAMTFDSIIHRDWAPYS 484
BLAST of mRNA_E_fasciculatus_S2_contig900.17099.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFA2_9PHAE) HSP 1 Score: 68.6 bits (166), Expect = 8.050e-9 Identity = 50/176 (28.41%), Postives = 80/176 (45.45%), Query Frame = 1
Query: 901 VTSILVHLFHCCRVEVRRRLRVRVDGLRAFVGGAEFVQLGGVTSGPGTSGPKASLXXXXXXXXXXXAPGGVMAQDTHELLYGELRRRHRTIAGLGRKDLVTLSARVLSRALKTEAKKEVGRMLVHQTWPTFEPVVRSYLALFVECALQEPQIEFDEAAGKEEPFDPEKHRPLASFS 1428
+ S+L + F CR EV+R L R+ L AF+G E + L + G M DT +LY L + ++ I + L+ VL R + + ++ WP+FE ++++YL +FVE ALQ+P++EF++ G FD HR A +S
Sbjct: 166 ILSVLYNTFLVCREEVQRCLDERLQNLSAFLGNDEPILL---------------------------SAGDEMNLDTQYVLYECLCKDYQRIVPADPDRMNALAGVVLRRCEEPADESLANEIISGPAWPSFEALMKNYLMVFVEMALQKPRVEFEDNLGDAVTFDSVVHRDWAPYS 314
BLAST of mRNA_E_fasciculatus_S2_contig900.17099.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEF9_ECTSI) HSP 1 Score: 56.2 bits (134), Expect = 3.710e-5 Identity = 29/32 (90.62%), Postives = 29/32 (90.62%), Query Frame = 1
Query: 178 HQYRRSNSGVSLRSLRSVGSLNDMQ--HALVR 267
HQYRRSNSGVSLRSLRSVGSLNDMQ H LVR
Sbjct: 202 HQYRRSNSGVSLRSLRSVGSLNDMQQQHVLVR 233 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig900.17099.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig900.17099.1 >prot_E_fasciculatus_S2_contig900.17099.1 ID=prot_E_fasciculatus_S2_contig900.17099.1|Name=mRNA_E_fasciculatus_S2_contig900.17099.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=556bp GGRDSGEEEQRTTNTESCDGGGGQRPPHLELAVVEEGRGGGGGGRGRNHAback to top mRNA from alignment at E_fasciculatus_S2_contig900:1..4724+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig900.17099.1 ID=mRNA_E_fasciculatus_S2_contig900.17099.1|Name=mRNA_E_fasciculatus_S2_contig900.17099.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4724bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig900:1..4724+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig900:1..4724+ >mRNA_E_fasciculatus_S2_contig900.17099.1 ID=mRNA_E_fasciculatus_S2_contig900.17099.1|Name=mRNA_E_fasciculatus_S2_contig900.17099.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1668bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig900:1..4724+ (Ectocarpus fasciculatus EfasUO2)back to top |