mRNA_E_fasciculatus_S2_contig8958.17049.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8958.17049.1
Unique NamemRNA_E_fasciculatus_S2_contig8958.17049.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8958.17049.1 vs.
Match: USP (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL31_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 1.260e-23
Identity = 50/51 (98.04%), Postives = 50/51 (98.04%), Query Frame = 1 
Query:    1 QVTPRVVNNVPQDKTLSENELQHGDIILFQIRPDKVVKPEGEDKMDVEGQD 153
            QVTPRVVN VPQDKTLSENELQHGDIILFQIRPDKVVKPEGEDKMDVEGQD
Sbjct: 1068 QVTPRVVNKVPQDKTLSENELQHGDIILFQIRPDKVVKPEGEDKMDVEGQD 1118
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8958.17049.1 vs.
Match: USP (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU31_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 6.190e-13
Identity = 34/35 (97.14%), Postives = 34/35 (97.14%), Query Frame = 1 
Query:    1 QVTPRVVNNVPQDKTLSENELQHGDIILFQIRPDK 105
            QVTPRVVN VPQDKTLSENELQHGDIILFQIRPDK
Sbjct: 1111 QVTPRVVNKVPQDKTLSENELQHGDIILFQIRPDK 1145
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8958.17049.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
USP1.260e-2398.04domain-containing protein n=1 Tax=Ectocarpus silic... [more]
USP6.190e-1397.14domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8958contigE_fasciculatus_S2_contig8958:3317..4130 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score103.6
Seed ortholog evalue4.3e-20
Seed eggNOG ortholog2880.D8LL31
Model size236
KEGG koko:K11838
KEGG Pathwayko04068,ko05168,ko05169,ko05203,map04068,map05168,map05169,map05203
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.ubiquitinyl hydrolase activity
EggNOG OGsCOG5077@1,KOG1863@2759
EC3.4.19.12
Cds size234
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842548.875711-CDS-E_fasciculatus_S2_contig8958:3316..34211696842548.875711-CDS-E_fasciculatus_S2_contig8958:3316..3421Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8958 3317..3421 +
1696842548.889664-CDS-E_fasciculatus_S2_contig8958:3999..41281696842548.889664-CDS-E_fasciculatus_S2_contig8958:3999..4128Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8958 4000..4128 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8958.17049.1prot_E_fasciculatus_S2_contig8958.17049.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8958 3317..4128 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8958.17049.1

>prot_E_fasciculatus_S2_contig8958.17049.1 ID=prot_E_fasciculatus_S2_contig8958.17049.1|Name=mRNA_E_fasciculatus_S2_contig8958.17049.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=78bp
QVTPRVVNNVPQDKTLSENELQHGDIILFQIRPDKVVKPEGEDKMDVEGQ
DQPQQQQQQQGAGSGHGGAAAAAAAPDG
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mRNA from alignment at E_fasciculatus_S2_contig8958:3317..4130+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8958.17049.1 ID=mRNA_E_fasciculatus_S2_contig8958.17049.1|Name=mRNA_E_fasciculatus_S2_contig8958.17049.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=814bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8958:3317..4130+ (Ectocarpus fasciculatus EfasUO2)
CAGGTTACACCGAGGGTGGTGAACAATGTGCCCCAGGACAAGACCCTTAG
CGAGAACGAGCTCCAGCACGGGGACATAATCCTCTTCCAGATACGGCCGG
ACAAGGTACAGTACACTGTTGAGATGGATCTCAATGTCGACGGCGAGACG
ACACCTTGTGTTATAACCGAACAAATGCGTCTGCTCTTTGGAAGCATTCT
GCAGGAAACATTCAAAGGCTGCTTGGAGGGCGTAGAGGTTGCGGTGCAAG
GACCGAAAGTCAGAACCGGCGCCGGACGTATAGTGTGCACGTGGACGAGT
TCTCAAGGGCCACTGCAGCTAAAACAACTTCTATGTTACATCACCGCAGC
AGCAGCAGCAGCAGCAGGGGCGTCACGACGACCACTACCACCAACATCGT
CGCCAAGTACCGAACTTGCACATCGTAGATGAAATAGTGGAAGTCAACAC
CCCAAGATGCCTGCAAGGCACCGCAAAATTGCCCCGTTAGCAGTTGGCGC
CGTCATCGTCGATCGATCGCCCATGTTTTCACTTCAAGGGAGTCCCACAG
CACGTGGGCTGCTTGGCACCCGACAATCTATCGTGCTCGCCTCTGGCCTT
GGCTTTACCTTTCTGAAGCGCTTCCAACAACACAACCTCAAGCTTCCCCC
CACGCACACACCCATCGCTTTCGCTCGACGAAGGTCGTGAAGCCCGAGGG
CGAGGATAAGATGGACGTGGAAGGGCAAGACCAACCGCAGCAACAGCAGC
AGCAACAGGGAGCTGGTAGTGGACACGGAGGCGCCGCCGCCGCCGCTGCC
GCCCCCGATGGGGC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8958:3317..4130+

>mRNA_E_fasciculatus_S2_contig8958.17049.1 ID=mRNA_E_fasciculatus_S2_contig8958.17049.1|Name=mRNA_E_fasciculatus_S2_contig8958.17049.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=234bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8958:3317..4130+ (Ectocarpus fasciculatus EfasUO2)
CAGGTTACACCGAGGGTGGTGAACAATGTGCCCCAGGACAAGACCCTTAG
CGAGAACGAGCTCCAGCACGGGGACATAATCCTCTTCCAGATACGGCCGG
ACAAGGTCGTGAAGCCCGAGGGCGAGGATAAGATGGACGTGGAAGGGCAA
GACCAACCGCAGCAACAGCAGCAGCAACAGGGAGCTGGTAGTGGACACGG
AGGCGCCGCCGCCGCCGCTGCCGCCCCCGATGGG
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