mRNA_E_fasciculatus_S2_contig8897.16999.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8897.16999.1
Unique NamemRNA_E_fasciculatus_S2_contig8897.16999.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8897.16999.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8897contigE_fasciculatus_S2_contig8897:1636..2522 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size887
Hectar predicted targeting categoryother localisation
Exons1
Cds size480
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842544.2007184-UTR-E_fasciculatus_S2_contig8897:1635..20161696842544.2007184-UTR-E_fasciculatus_S2_contig8897:1635..2016Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8897 1636..2016 +
1696842544.2310085-UTR-E_fasciculatus_S2_contig8897:2496..25221696842544.2310085-UTR-E_fasciculatus_S2_contig8897:2496..2522Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8897 2497..2522 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842544.218844-CDS-E_fasciculatus_S2_contig8897:2016..24961696842544.218844-CDS-E_fasciculatus_S2_contig8897:2016..2496Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8897 2017..2496 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8897.16999.1prot_E_fasciculatus_S2_contig8897.16999.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8897 2017..2496 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8897.16999.1

>prot_E_fasciculatus_S2_contig8897.16999.1 ID=prot_E_fasciculatus_S2_contig8897.16999.1|Name=mRNA_E_fasciculatus_S2_contig8897.16999.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=160bp
MVRTIEDVVGTAETQKNMRWSDCPLRASHMEEDKEERTEQANAVGKQSIT
QAGYSMVTEYCSNATGGASCYRKCTWNAPPEKGTQKRAGCYKTEERITKL
EEAYICNHVFLAKYYPSVELSKRELASEQIPEHPQAQGQHVNDLCNRVAK
KLHFHSFRT*
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mRNA from alignment at E_fasciculatus_S2_contig8897:1636..2522+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8897.16999.1 ID=mRNA_E_fasciculatus_S2_contig8897.16999.1|Name=mRNA_E_fasciculatus_S2_contig8897.16999.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=887bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8897:1636..2522+ (Ectocarpus fasciculatus EfasUO2)
CTGCTCTCGTGATTGATTCGCAACGGGCTGGCCAAACCGCGGATTTTGAA
GATCTCGCAGAAATGGCGGAGAAATACCATACTAGCAAAATCCGGGGTAA
GCTAGACATCTACAATGATGGTGGTTCAGGAAGCCATGACCGTGCACTTC
ACACAGTAGCACACGGAGGAGCGCGTGCATTCCGCAAGCGGGGTTGGTCG
TGGAGGAGGAAGTCGTTGCGGACGAGGCGGTGACAAACAACTCGACGAAC
GGCCCGTCGAGCGGGAAAACTTTGCGTCGAACCGAAAACATGGGACACGC
GGCGGAAACGGCGCAGCAAGTGCGGGAGGAACCACACCACAAGGAAACGA
ATCTTCTAAGAGGACGCGCACGGACAGGACAATGGTGAGGACCATAGAGG
ACGTTGTCGGTACTGCAGAAACCCAAAAGAACATGAGGTGGTCCGACTGT
CCGCTGCGCGCGTCGCACATGGAAGAAGACAAAGAAGAACGAACCGAGCA
GGCGAACGCTGTCGGAAAACAAAGTATCACCCAGGCGGGATACAGCATGG
TCACAGAATACTGCAGCAACGCCACCGGAGGAGCGAGCTGCTACAGAAAA
TGCACGTGGAATGCCCCACCAGAGAAGGGTACCCAGAAAAGAGCTGGCTG
TTACAAAACGGAGGAACGAATTACTAAACTAGAAGAAGCGTACATATGCA
ACCACGTATTCTTGGCAAAGTACTATCCCTCCGTTGAACTATCCAAGCGG
GAGCTTGCCTCAGAGCAGATTCCGGAACACCCACAAGCTCAAGGGCAGCA
TGTAAACGACCTGTGTAACAGAGTCGCAAAGAAGTTGCATTTTCATTCAT
TCCGAACATAAAATTGAAACACCAGCCCGAGCGACAC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8897:1636..2522+

>mRNA_E_fasciculatus_S2_contig8897.16999.1 ID=mRNA_E_fasciculatus_S2_contig8897.16999.1|Name=mRNA_E_fasciculatus_S2_contig8897.16999.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=480bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8897:1636..2522+ (Ectocarpus fasciculatus EfasUO2)
ATGGTGAGGACCATAGAGGACGTTGTCGGTACTGCAGAAACCCAAAAGAA
CATGAGGTGGTCCGACTGTCCGCTGCGCGCGTCGCACATGGAAGAAGACA
AAGAAGAACGAACCGAGCAGGCGAACGCTGTCGGAAAACAAAGTATCACC
CAGGCGGGATACAGCATGGTCACAGAATACTGCAGCAACGCCACCGGAGG
AGCGAGCTGCTACAGAAAATGCACGTGGAATGCCCCACCAGAGAAGGGTA
CCCAGAAAAGAGCTGGCTGTTACAAAACGGAGGAACGAATTACTAAACTA
GAAGAAGCGTACATATGCAACCACGTATTCTTGGCAAAGTACTATCCCTC
CGTTGAACTATCCAAGCGGGAGCTTGCCTCAGAGCAGATTCCGGAACACC
CACAAGCTCAAGGGCAGCATGTAAACGACCTGTGTAACAGAGTCGCAAAG
AAGTTGCATTTTCATTCATTCCGAACATAA
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