mRNA_E_fasciculatus_S2_contig8853.16951.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8853.16951.1
Unique NamemRNA_E_fasciculatus_S2_contig8853.16951.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8853.16951.1 vs.
Match: EsV-1-1 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB07_ECTSI)

HSP 1 Score: 49.7 bits (117), Expect = 8.270e-5
Identity = 27/69 (39.13%), Postives = 40/69 (57.97%), Query Frame = 3 
Query:  120 KWPRGRLNRLHWYAGQGDPLGIASELKSRRYDINMISEGKNGLTALMYAIGSGVLSAVKVLLDNGADVS 326
            +WPR  LN LH    +GD     + L S++++++    G  G+T LM AI  G L  VK+LLD G ++S
Sbjct:   13 RWPRRPLNDLHKAVERGDTERAVALLSSKKFNVDE-GGGSMGVTPLMIAIFKGNLRMVKILLDEGCNLS 80
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8853.16951.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
EsV-1-18.270e-539.13n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8853contigE_fasciculatus_S2_contig8853:2662..3113 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size327
Hectar predicted targeting categoryother localisation
Exons2
Cds size318
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842540.0067534-CDS-E_fasciculatus_S2_contig8853:2661..28681696842540.0067534-CDS-E_fasciculatus_S2_contig8853:2661..2868Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8853 2662..2868 -
1696842540.0184038-CDS-E_fasciculatus_S2_contig8853:2994..31051696842540.0184038-CDS-E_fasciculatus_S2_contig8853:2994..3105Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8853 2995..3105 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842540.0286782-UTR-E_fasciculatus_S2_contig8853:3105..31131696842540.0286782-UTR-E_fasciculatus_S2_contig8853:3105..3113Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8853 3106..3113 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8853.16951.1prot_E_fasciculatus_S2_contig8853.16951.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8853 2662..3105 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8853.16951.1

>prot_E_fasciculatus_S2_contig8853.16951.1 ID=prot_E_fasciculatus_S2_contig8853.16951.1|Name=mRNA_E_fasciculatus_S2_contig8853.16951.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=106bp
MADENGRGERGPNTATVASMSAAAAGGVVGSSAPNAKKWPRGRLNRLHWY
AGQGDPLGIASELKSRRYDINMISEGKNGLTALMYAIGSGVLSAVKVLLD
NGADVS
back to top

mRNA from alignment at E_fasciculatus_S2_contig8853:2662..3113-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8853.16951.1 ID=mRNA_E_fasciculatus_S2_contig8853.16951.1|Name=mRNA_E_fasciculatus_S2_contig8853.16951.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=452bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8853:2662..3113- (Ectocarpus fasciculatus EfasUO2)
AGTGAGTGATGGCGGATGAGAATGGTAGAGGGGAACGGGGGCCAAACACT
GCGACAGTGGCTAGCATGAGCGCGGCGGCAGCGGGCGGAGTCGTAGGCAG
CTCTGCACCAAACGCGAAGGTGTGGTTCGTGTAGTTCGTGATTAGCACAG
CAGCAGTGGCTTTTTCGAAACCACCTAACGTGGCGTGCAACAAGTAAAAA
TCTCTCTCCATTCTCTCTCGTTATCCGCCCAATCCGCACCAACAGAAGTG
GCCCCGTGGAAGACTGAACAGGCTTCACTGGTACGCAGGCCAAGGAGACC
CACTCGGAATTGCGTCAGAGTTGAAATCACGACGGTACGACATCAACATG
ATCAGCGAGGGGAAAAATGGCCTGACCGCTCTCATGTACGCCATAGGATC
GGGTGTCTTGTCCGCTGTGAAGGTTCTTCTGGACAATGGGGCCGATGTTT
CG
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8853:2662..3113-

>mRNA_E_fasciculatus_S2_contig8853.16951.1 ID=mRNA_E_fasciculatus_S2_contig8853.16951.1|Name=mRNA_E_fasciculatus_S2_contig8853.16951.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=318bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8853:2662..3113- (Ectocarpus fasciculatus EfasUO2)
ATGGCGGATGAGAATGGTAGAGGGGAACGGGGGCCAAACACTGCGACAGT
GGCTAGCATGAGCGCGGCGGCAGCGGGCGGAGTCGTAGGCAGCTCTGCAC
CAAACGCGAAGAAGTGGCCCCGTGGAAGACTGAACAGGCTTCACTGGTAC
GCAGGCCAAGGAGACCCACTCGGAATTGCGTCAGAGTTGAAATCACGACG
GTACGACATCAACATGATCAGCGAGGGGAAAAATGGCCTGACCGCTCTCA
TGTACGCCATAGGATCGGGTGTCTTGTCCGCTGTGAAGGTTCTTCTGGAC
AATGGGGCCGATGTTTCG
back to top