mRNA_E_fasciculatus_S2_contig8853.16949.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8853.16949.1 vs.
Match: EsV-1-199 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVK3_ECTSI) HSP 1 Score: 73.2 bits (178), Expect = 1.300e-11 Identity = 71/199 (35.68%), Postives = 94/199 (47.24%), Query Frame = 2
Query: 2 ENGAVLGYASEKGRPLSVKFLLQQRQGKSDEGRLYVDSTYDVRGRTPLERCAL---ATKSCC-KTAQMLIAHGADATPVI----------LRVDKLFEAVESIR---AGNFHLTEECRLKMEGIRRLLLRAEAIRALSWAWP------GAAKGVVAVRATD----TPP--RRILPIMRRRACRPKVLLAALIRYNGKLD 511
+ G L A+ G VKFLLQQ+ G E YV D GRTPL C + +SC K ++L+ GAD T ++ + L A E++R A + +E ++E IRRLLLR EA+ A SW W G G A T+ T P R +LPI+RRRA + A+L RY KLD
Sbjct: 243 DTGIALVKATSFGHMDVVKFLLQQQNGTPSEKSAYVSRPRDPCGRTPLI-CNIDVGLNQSCSPKVVRLLVDAGADTTSIVRFTIQPGTLPVVCTPLSLATEALRIKIAYRKAIPDELLRRLELIRRLLLRVEAVHATSWLWQNGVPRVGLPAGGTAATETESSSTTAPQLRTVLPILRRRARGRGFVSASLCRYAVKLD 440
BLAST of mRNA_E_fasciculatus_S2_contig8853.16949.1 vs.
Match: EsV-1-1 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT11_ECTSI) HSP 1 Score: 71.6 bits (174), Expect = 4.810e-11 Identity = 66/195 (33.85%), Postives = 91/195 (46.67%), Query Frame = 2
Query: 2 ENGAVLGYASEKGRPLSVKFLLQQRQGKSDEGRLYVDSTY----DVRGRTPLERCALATKSCCKTA----QMLIAHGADATPVI----LRVDKLFEAV----------ESIRAGNFHLTEECRLKMEGIRRLLLRAEAIRALSWAWPGAAKGVVAVRATDTPP-----RRILPIMRRRACRPKVLLAALIRYNGK 505
+ G L A+ G SVKFLL+ R EG V+ Y DV G TPL C T+ C A +ML+ GAD T + L+ +F + I A T+E ++E I RLLLR +A+ A+SW WP A + TD P + +LPI++RR R L+A L+RY+ K
Sbjct: 338 DTGKALYLAAGMGHEASVKFLLRHRH---KEGGCGVEGAYLNARDVNGYTPLVVC---TQGCFSQAPRIVRMLVDAGADTTSPVQVMNLKGGVVFNDTPLAFTKLRLRKKIVADGKPATKEHLQRLEAICRLLLRVDAVHAVSWLWPSGAPFIGRATETDPEPPLPALKLMLPILKRRTKRRCGLVATLLRYSVK 526
BLAST of mRNA_E_fasciculatus_S2_contig8853.16949.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQV0_9PHAE) HSP 1 Score: 69.3 bits (168), Expect = 2.790e-10 Identity = 70/213 (32.86%), Postives = 96/213 (45.07%), Query Frame = 2
Query: 2 ENGAVLGYASEKGRPLSVKFLLQQRQGKSDEGRLYVDSTYDVRGRTPL----ERCALATKSCCKTAQMLIAHGADATPVILRVDKLFEAVESIRAGNFH------------------LTEECRLKMEGIRRLLLRAEAIRALSWAWPG--------AAKGVVAVRATDTPPRRILPIMRRRACRP-KVLLAALIRYNGKLDAPFLGDSLNEQD 547
+ G L A+ G +KFLL+Q +G+ R +T + G T L +RC + Q+L+ GAD T +L ++ E +FH LT E + K+E IRRLLLR EA+ A+SW WP AKG AT T + +M R R K LLAAL+RY+ KL+A L NE+D
Sbjct: 246 DTGLALVVAAGYGGEAPLKFLLEQARGRKSTDRAAYMNTLNGVGLTSLLDGIQRCRP------RVVQLLVEAGADTTSPVLICNQPGE-------DDFHITPLGLTMCLLGGRSAKPLTMEEQNKLEVIRRLLLREEAVHAVSWLWPSDTPTITHATAKGTGRTTATSTAATPFIMLMIGRRTRGRKGLLAALLRYSSKLEA--LTGMENEKD 443
BLAST of mRNA_E_fasciculatus_S2_contig8853.16949.1 vs.
Match: EsV-1-199 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSC5_ECTSI) HSP 1 Score: 65.1 bits (157), Expect = 2.970e-9 Identity = 62/187 (33.16%), Postives = 90/187 (48.13%), Query Frame = 2
Query: 8 GAVLGYASEKGRPLSVKFLLQQRQGKSDEGRLYVDSTYDVRGRTPL----ERCALATKSCCKTAQMLIAHGADATPVILRVDKLFEAVE------SIRAGNFH--------LTEECRLKMEGIRRLLLRAEAIRALSWAWPGAAKGVVAV--RATDTPPRR-----ILPIMRRRACRPKVLLAALIR 493
G VL + GR SV+FLL+QR+ +S+ ++ D G TPL E C+ + ++L+ GAD T + RV L VE ++ TEE +++ IRRLLLR +A+ A+SW WP A +V R+ PRR LPI++RRA V +A L+R
Sbjct: 21 GYVLLGTAGLGREASVQFLLRQRRKESEMSVHAYANSSDGSGMTPLSCSIEWCSSGNP---RIVRLLVDAGADTTSTV-RVTNLNGGVEYNDTPLAVTTSLLREKVVDGKPATEEQLHRLQAIRRLLLRVDAVHAVSWLWPSDAPSIVHAVERSCGPEPRRPPLSLTLPILKRRAKTCHVFVATLLR 203
BLAST of mRNA_E_fasciculatus_S2_contig8853.16949.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1W5_9PHAE) HSP 1 Score: 63.9 bits (154), Expect = 2.330e-8 Identity = 62/185 (33.51%), Postives = 88/185 (47.57%), Query Frame = 2
Query: 59 FLLQQRQGK--SDEGRLYVD-------STYD--VRGRTPL-ERCALATKSCCKTAQMLIAHGADATPVILRVDKLFEAVES---------IRAGNFHLTEECRLKME------GIRRLLLRAEAIRALSWAWP-GAAKGVV-AVRATDTPPRRILPIMRRRACRPKVLLAALIRYNGKLDAPFLG 526
+LL +RQG+ S + R YV+ TYD V PL L + + A++L+ GADAT + E E + F R+ E G+ RLL + EA+ ++SW WP + V A R T R+LP+++RRA +P+VLLAA+ RYN K D FLG
Sbjct: 628 YLLLRRQGRKASTDSRAYVNMDHGSLPETYDEFVFQEPPLVSTFNLGSFHAPRFARLLLEAGADATSGVRFPCDSDEGEEDEGFIGTPLDLATSYFRRFSPMRVHREMVRGLKGVIRLLRQEEAVHSVSWTWPIDTGRSVERASRKKSTSIARMLPLLKRRAAKPRVLLAAMSRYNEKQDGTFLG 812
BLAST of mRNA_E_fasciculatus_S2_contig8853.16949.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJA9_9PHAE) HSP 1 Score: 63.5 bits (153), Expect = 2.610e-8 Identity = 61/191 (31.94%), Postives = 86/191 (45.03%), Query Frame = 2
Query: 2 ENGAVLGYASEKGRPLSVKFLLQQRQGKSDEGRLYVDSTYDVRGRTPLERCALATKSCCKTAQMLIAHGADAT-PVILR---------VDKLFEAVESIR-----AGNFHLTEECRLKMEGIRRLLLRAEAIRALSWAWPG--------AAKGVVAVRATDTPPRRILPIMRRRACRPKVLLAALIRYNGK 505
+ G L A+ G +KFLL+Q + + +T D G TPL + + ++L+ GAD T PV +R + L + +R G + E K+E IRRLLLR EA+ A+SW WP AA+G A T + + RRRA KV LAAL+RY+ K
Sbjct: 246 DTGLALVVAAGYGGETPLKFLLEQARARKTMDEAAYVNTRDRGGVTPLLWGIQHYRP--RVVRLLVEAGADTTSPVAVRNQLGGDDVSITPLGLTMNPVRDKVKVVGRGPASPEQLHKLEAIRRLLLRVEAVHAVSWLWPSDISTITRAAARGTDRTTAISTAVTLPMLVTRRRARGRKVPLAALLRYSSK 434
BLAST of mRNA_E_fasciculatus_S2_contig8853.16949.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHQ8_9PHAE) HSP 1 Score: 63.2 bits (152), Expect = 3.630e-8 Identity = 35/74 (47.30%), Postives = 49/74 (66.22%), Query Frame = 2
Query: 311 MEGIRRLLLRAEAIRALSWAWP-GAAKGVV-AVRATDTPPRRILPIMRRRACRPKVLLAALIRYNGKLDAPFLG 526
++G+ RLL + EA+ A+SW WP + V A R T R+LP+++RRA +P+VLLAA+ RYN K D FLG
Sbjct: 349 LKGVIRLLRQEEAVHAVSWTWPIDTGRSVERASRKKSTSIARMLPLLKRRAAKPRVLLAAMSRYNNKHDGAFLG 422
BLAST of mRNA_E_fasciculatus_S2_contig8853.16949.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5L0_9PHAE) HSP 1 Score: 62.8 bits (151), Expect = 5.020e-8 Identity = 65/197 (32.99%), Postives = 95/197 (48.22%), Query Frame = 2
Query: 53 VKFLLQQRQGKSDEG-RLYVD-------STYD--VRGRTPL-ERCALATKSCCKTAQMLIAHGADATPVILRVDKLFEAVESI---------------RAGNFHLTEECRLKMEGIRRLLLRAEAIRALSWAWPGAAKGVVAVRATDTPPR---RILPIMRRRACRPKVLLAALIRYNGKLDAPFLGDSLNEQDTTV 556
V LL+++ G ++ G R YV+ TYD V TPL L + A++L+ GADAT + E E R + + E +++G+ RLL + EA+ ++SW WP G RA+ P R++P+++RRA +P+VLLAAL RYN K D FLG L E+ T V
Sbjct: 291 VYLLLRRQGGNANTGTRAYVNMDHGTLPETYDEFVFQETPLVSTFNLGSFHAPGFARLLLEAGADATSGVRFPCDSDEGEEDEGFIGTPLDLATSYFRRFSSMSVHREMVPELKGVIRLLRQEEAVHSVSWTWP-IDNGRSVERASRKKPTSIARMVPLLKRRAAKPRVLLAALSRYNEKQDGAFLG-YLPEKSTGV 485
BLAST of mRNA_E_fasciculatus_S2_contig8853.16949.1 vs.
Match: EsV-1-199 (n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1Y3_ECTSI) HSP 1 Score: 57.8 bits (138), Expect = 2.300e-6 Identity = 36/73 (49.32%), Postives = 45/73 (61.64%), Query Frame = 2
Query: 308 KMEGIRRLLLRAEAIRALSWAWPGAAKGVVAVRATD------TPPRRI---LPIMRRRACRPKVLLAALIRYN 499
++E +RRLLLR EA+ A SW WP +A G VA A + T P R+ L I+RRRA R VLL AL RY+
Sbjct: 301 RLEAVRRLLLRVEAVHATSWVWPSSAAGSVAQDAAEVKAGAETEPTRLTSTLQILRRRATRRGVLLRALSRYS 373
BLAST of mRNA_E_fasciculatus_S2_contig8853.16949.1 vs.
Match: EsV-1-199 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSU4_ECTSI) HSP 1 Score: 53.1 bits (126), Expect = 7.000e-5 Identity = 43/124 (34.68%), Postives = 59/124 (47.58%), Query Frame = 2
Query: 179 KTAQMLIAHGADATPVILRVDKLFEAVESIRAG----------NFHLTEECRLKMEGIRRLLLRAEAIRALSWAWP--------GAAKGVVAVRATDTPPRRILPIMRRRACRPKVLLAALIRY 496
+ Q+L+ GAD T + V K F G + LTEE K++ IRRLLLR EA+ A+SW W A G AT T ++ +MRRR R +V L+AL+R+
Sbjct: 166 RVGQLLVEAGADTTSAV-PVSKHFGKDSVTPLGLTMRLLDGRSTYPLTEEQLKKLKAIRRLLLRVEAVHAVSWLWSTDISTITHSTAHGTDRTIATSTTGTPLMLMMRRRTKRREVPLSALLRW 288 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8853.16949.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig8853.16949.1 >prot_E_fasciculatus_S2_contig8853.16949.1 ID=prot_E_fasciculatus_S2_contig8853.16949.1|Name=mRNA_E_fasciculatus_S2_contig8853.16949.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=128bp MLIAHGADATPVILRVDKLFEAVESIRAGNFHLTEECRLKMEGIRRLLLRback to top mRNA from alignment at E_fasciculatus_S2_contig8853:1416..2149- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig8853.16949.1 ID=mRNA_E_fasciculatus_S2_contig8853.16949.1|Name=mRNA_E_fasciculatus_S2_contig8853.16949.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=734bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8853:1416..2149- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8853:1416..2149- >mRNA_E_fasciculatus_S2_contig8853.16949.1 ID=mRNA_E_fasciculatus_S2_contig8853.16949.1|Name=mRNA_E_fasciculatus_S2_contig8853.16949.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=384bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8853:1416..2149- (Ectocarpus fasciculatus EfasUO2)back to top |