mRNA_E_fasciculatus_S2_contig8853.16949.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8853.16949.1
Unique NamemRNA_E_fasciculatus_S2_contig8853.16949.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8853.16949.1 vs.
Match: EsV-1-199 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVK3_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 1.300e-11
Identity = 71/199 (35.68%), Postives = 94/199 (47.24%), Query Frame = 2
Query:    2 ENGAVLGYASEKGRPLSVKFLLQQRQGKSDEGRLYVDSTYDVRGRTPLERCAL---ATKSCC-KTAQMLIAHGADATPVI----------LRVDKLFEAVESIR---AGNFHLTEECRLKMEGIRRLLLRAEAIRALSWAWP------GAAKGVVAVRATD----TPP--RRILPIMRRRACRPKVLLAALIRYNGKLD 511
            + G  L  A+  G    VKFLLQQ+ G   E   YV    D  GRTPL  C +     +SC  K  ++L+  GAD T ++          +    L  A E++R   A    + +E   ++E IRRLLLR EA+ A SW W       G   G  A   T+    T P  R +LPI+RRRA     + A+L RY  KLD
Sbjct:  243 DTGIALVKATSFGHMDVVKFLLQQQNGTPSEKSAYVSRPRDPCGRTPLI-CNIDVGLNQSCSPKVVRLLVDAGADTTSIVRFTIQPGTLPVVCTPLSLATEALRIKIAYRKAIPDELLRRLELIRRLLLRVEAVHATSWLWQNGVPRVGLPAGGTAATETESSSTTAPQLRTVLPILRRRARGRGFVSASLCRYAVKLD 440          
BLAST of mRNA_E_fasciculatus_S2_contig8853.16949.1 vs.
Match: EsV-1-1 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT11_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 4.810e-11
Identity = 66/195 (33.85%), Postives = 91/195 (46.67%), Query Frame = 2
Query:    2 ENGAVLGYASEKGRPLSVKFLLQQRQGKSDEGRLYVDSTY----DVRGRTPLERCALATKSCCKTA----QMLIAHGADATPVI----LRVDKLFEAV----------ESIRAGNFHLTEECRLKMEGIRRLLLRAEAIRALSWAWPGAAKGVVAVRATDTPP-----RRILPIMRRRACRPKVLLAALIRYNGK 505
            + G  L  A+  G   SVKFLL+ R     EG   V+  Y    DV G TPL  C   T+ C   A    +ML+  GAD T  +    L+   +F             + I A     T+E   ++E I RLLLR +A+ A+SW WP  A  +     TD  P     + +LPI++RR  R   L+A L+RY+ K
Sbjct:  338 DTGKALYLAAGMGHEASVKFLLRHRH---KEGGCGVEGAYLNARDVNGYTPLVVC---TQGCFSQAPRIVRMLVDAGADTTSPVQVMNLKGGVVFNDTPLAFTKLRLRKKIVADGKPATKEHLQRLEAICRLLLRVDAVHAVSWLWPSGAPFIGRATETDPEPPLPALKLMLPILKRRTKRRCGLVATLLRYSVK 526          
BLAST of mRNA_E_fasciculatus_S2_contig8853.16949.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQV0_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 2.790e-10
Identity = 70/213 (32.86%), Postives = 96/213 (45.07%), Query Frame = 2
Query:    2 ENGAVLGYASEKGRPLSVKFLLQQRQGKSDEGRLYVDSTYDVRGRTPL----ERCALATKSCCKTAQMLIAHGADATPVILRVDKLFEAVESIRAGNFH------------------LTEECRLKMEGIRRLLLRAEAIRALSWAWPG--------AAKGVVAVRATDTPPRRILPIMRRRACRP-KVLLAALIRYNGKLDAPFLGDSLNEQD 547
            + G  L  A+  G    +KFLL+Q +G+    R    +T +  G T L    +RC        +  Q+L+  GAD T  +L  ++  E        +FH                  LT E + K+E IRRLLLR EA+ A+SW WP          AKG     AT T     + +M  R  R  K LLAAL+RY+ KL+A  L    NE+D
Sbjct:  246 DTGLALVVAAGYGGEAPLKFLLEQARGRKSTDRAAYMNTLNGVGLTSLLDGIQRCRP------RVVQLLVEAGADTTSPVLICNQPGE-------DDFHITPLGLTMCLLGGRSAKPLTMEEQNKLEVIRRLLLREEAVHAVSWLWPSDTPTITHATAKGTGRTTATSTAATPFIMLMIGRRTRGRKGLLAALLRYSSKLEA--LTGMENEKD 443          
BLAST of mRNA_E_fasciculatus_S2_contig8853.16949.1 vs.
Match: EsV-1-199 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSC5_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 2.970e-9
Identity = 62/187 (33.16%), Postives = 90/187 (48.13%), Query Frame = 2
Query:    8 GAVLGYASEKGRPLSVKFLLQQRQGKSDEGRLYVDSTYDVRGRTPL----ERCALATKSCCKTAQMLIAHGADATPVILRVDKLFEAVE------SIRAGNFH--------LTEECRLKMEGIRRLLLRAEAIRALSWAWPGAAKGVVAV--RATDTPPRR-----ILPIMRRRACRPKVLLAALIR 493
            G VL   +  GR  SV+FLL+QR+ +S+       ++ D  G TPL    E C+       +  ++L+  GAD T  + RV  L   VE      ++               TEE   +++ IRRLLLR +A+ A+SW WP  A  +V    R+    PRR      LPI++RRA    V +A L+R
Sbjct:   21 GYVLLGTAGLGREASVQFLLRQRRKESEMSVHAYANSSDGSGMTPLSCSIEWCSSGNP---RIVRLLVDAGADTTSTV-RVTNLNGGVEYNDTPLAVTTSLLREKVVDGKPATEEQLHRLQAIRRLLLRVDAVHAVSWLWPSDAPSIVHAVERSCGPEPRRPPLSLTLPILKRRAKTCHVFVATLLR 203          
BLAST of mRNA_E_fasciculatus_S2_contig8853.16949.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1W5_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 2.330e-8
Identity = 62/185 (33.51%), Postives = 88/185 (47.57%), Query Frame = 2
Query:   59 FLLQQRQGK--SDEGRLYVD-------STYD--VRGRTPL-ERCALATKSCCKTAQMLIAHGADATPVILRVDKLFEAVES---------IRAGNFHLTEECRLKME------GIRRLLLRAEAIRALSWAWP-GAAKGVV-AVRATDTPPRRILPIMRRRACRPKVLLAALIRYNGKLDAPFLG 526
            +LL +RQG+  S + R YV+        TYD  V    PL     L +    + A++L+  GADAT  +       E  E          +    F      R+  E      G+ RLL + EA+ ++SW WP    + V  A R   T   R+LP+++RRA +P+VLLAA+ RYN K D  FLG
Sbjct:  628 YLLLRRQGRKASTDSRAYVNMDHGSLPETYDEFVFQEPPLVSTFNLGSFHAPRFARLLLEAGADATSGVRFPCDSDEGEEDEGFIGTPLDLATSYFRRFSPMRVHREMVRGLKGVIRLLRQEEAVHSVSWTWPIDTGRSVERASRKKSTSIARMLPLLKRRAAKPRVLLAAMSRYNEKQDGTFLG 812          
BLAST of mRNA_E_fasciculatus_S2_contig8853.16949.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJA9_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 2.610e-8
Identity = 61/191 (31.94%), Postives = 86/191 (45.03%), Query Frame = 2
Query:    2 ENGAVLGYASEKGRPLSVKFLLQQRQGKSDEGRLYVDSTYDVRGRTPLERCALATKSCCKTAQMLIAHGADAT-PVILR---------VDKLFEAVESIR-----AGNFHLTEECRLKMEGIRRLLLRAEAIRALSWAWPG--------AAKGVVAVRATDTPPRRILPIMRRRACRPKVLLAALIRYNGK 505
            + G  L  A+  G    +KFLL+Q + +         +T D  G TPL       +   +  ++L+  GAD T PV +R         +  L   +  +R      G    + E   K+E IRRLLLR EA+ A+SW WP         AA+G     A  T     + + RRRA   KV LAAL+RY+ K
Sbjct:  246 DTGLALVVAAGYGGETPLKFLLEQARARKTMDEAAYVNTRDRGGVTPLLWGIQHYRP--RVVRLLVEAGADTTSPVAVRNQLGGDDVSITPLGLTMNPVRDKVKVVGRGPASPEQLHKLEAIRRLLLRVEAVHAVSWLWPSDISTITRAAARGTDRTTAISTAVTLPMLVTRRRARGRKVPLAALLRYSSK 434          
BLAST of mRNA_E_fasciculatus_S2_contig8853.16949.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHQ8_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 3.630e-8
Identity = 35/74 (47.30%), Postives = 49/74 (66.22%), Query Frame = 2
Query:  311 MEGIRRLLLRAEAIRALSWAWP-GAAKGVV-AVRATDTPPRRILPIMRRRACRPKVLLAALIRYNGKLDAPFLG 526
            ++G+ RLL + EA+ A+SW WP    + V  A R   T   R+LP+++RRA +P+VLLAA+ RYN K D  FLG
Sbjct:  349 LKGVIRLLRQEEAVHAVSWTWPIDTGRSVERASRKKSTSIARMLPLLKRRAAKPRVLLAAMSRYNNKHDGAFLG 422          
BLAST of mRNA_E_fasciculatus_S2_contig8853.16949.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5L0_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 5.020e-8
Identity = 65/197 (32.99%), Postives = 95/197 (48.22%), Query Frame = 2
Query:   53 VKFLLQQRQGKSDEG-RLYVD-------STYD--VRGRTPL-ERCALATKSCCKTAQMLIAHGADATPVILRVDKLFEAVESI---------------RAGNFHLTEECRLKMEGIRRLLLRAEAIRALSWAWPGAAKGVVAVRATDTPPR---RILPIMRRRACRPKVLLAALIRYNGKLDAPFLGDSLNEQDTTV 556
            V  LL+++ G ++ G R YV+        TYD  V   TPL     L +      A++L+  GADAT  +       E  E                 R  +  +  E   +++G+ RLL + EA+ ++SW WP    G    RA+   P    R++P+++RRA +P+VLLAAL RYN K D  FLG  L E+ T V
Sbjct:  291 VYLLLRRQGGNANTGTRAYVNMDHGTLPETYDEFVFQETPLVSTFNLGSFHAPGFARLLLEAGADATSGVRFPCDSDEGEEDEGFIGTPLDLATSYFRRFSSMSVHREMVPELKGVIRLLRQEEAVHSVSWTWP-IDNGRSVERASRKKPTSIARMVPLLKRRAAKPRVLLAALSRYNEKQDGAFLG-YLPEKSTGV 485          
BLAST of mRNA_E_fasciculatus_S2_contig8853.16949.1 vs.
Match: EsV-1-199 (n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1Y3_ECTSI)

HSP 1 Score: 57.8 bits (138), Expect = 2.300e-6
Identity = 36/73 (49.32%), Postives = 45/73 (61.64%), Query Frame = 2
Query:  308 KMEGIRRLLLRAEAIRALSWAWPGAAKGVVAVRATD------TPPRRI---LPIMRRRACRPKVLLAALIRYN 499
            ++E +RRLLLR EA+ A SW WP +A G VA  A +      T P R+   L I+RRRA R  VLL AL RY+
Sbjct:  301 RLEAVRRLLLRVEAVHATSWVWPSSAAGSVAQDAAEVKAGAETEPTRLTSTLQILRRRATRRGVLLRALSRYS 373          
BLAST of mRNA_E_fasciculatus_S2_contig8853.16949.1 vs.
Match: EsV-1-199 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSU4_ECTSI)

HSP 1 Score: 53.1 bits (126), Expect = 7.000e-5
Identity = 43/124 (34.68%), Postives = 59/124 (47.58%), Query Frame = 2
Query:  179 KTAQMLIAHGADATPVILRVDKLFEAVESIRAG----------NFHLTEECRLKMEGIRRLLLRAEAIRALSWAWP--------GAAKGVVAVRATDTPPRRILPIMRRRACRPKVLLAALIRY 496
            +  Q+L+  GAD T  +  V K F        G           + LTEE   K++ IRRLLLR EA+ A+SW W           A G     AT T    ++ +MRRR  R +V L+AL+R+
Sbjct:  166 RVGQLLVEAGADTTSAV-PVSKHFGKDSVTPLGLTMRLLDGRSTYPLTEEQLKKLKAIRRLLLRVEAVHAVSWLWSTDISTITHSTAHGTDRTIATSTTGTPLMLMMRRRTKRREVPLSALLRW 288          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8853.16949.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
EsV-1-1991.300e-1135.68n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7... [more]
EsV-1-14.810e-1133.85n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7... [more]
Uncharacterized2.790e-1032.86protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
EsV-1-1992.970e-933.16n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8... [more]
Uncharacterized2.330e-833.51protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.610e-831.94protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized3.630e-847.30protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized5.020e-832.99protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
EsV-1-1992.300e-649.32n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1Y3_ECTSI[more]
EsV-1-1997.000e-534.68n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8853contigE_fasciculatus_S2_contig8853:1416..2149 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score63.2
Seed ortholog evalue1e-07
Seed eggNOG ortholog2880.D7G2C8
Model size625
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.protein kinase activity
EggNOG OGsCOG0515@1,KOG0192@2759
Cds size384
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842539.9390216-UTR-E_fasciculatus_S2_contig8853:1415..14661696842539.9390216-UTR-E_fasciculatus_S2_contig8853:1415..1466Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8853 1416..1466 -
1696842539.9742866-UTR-E_fasciculatus_S2_contig8853:1959..21491696842539.9742866-UTR-E_fasciculatus_S2_contig8853:1959..2149Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8853 1960..2149 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842539.9511247-CDS-E_fasciculatus_S2_contig8853:1466..15481696842539.9511247-CDS-E_fasciculatus_S2_contig8853:1466..1548Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8853 1467..1548 -
1696842539.96222-CDS-E_fasciculatus_S2_contig8853:1657..19591696842539.96222-CDS-E_fasciculatus_S2_contig8853:1657..1959Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8853 1658..1959 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8853.16949.1prot_E_fasciculatus_S2_contig8853.16949.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8853 1467..1959 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8853.16949.1

>prot_E_fasciculatus_S2_contig8853.16949.1 ID=prot_E_fasciculatus_S2_contig8853.16949.1|Name=mRNA_E_fasciculatus_S2_contig8853.16949.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=128bp
MLIAHGADATPVILRVDKLFEAVESIRAGNFHLTEECRLKMEGIRRLLLR
AEAIRALSWAWPGAAKGVVAVRATDTPPRRILPIMRRRACRPKVLLAALI
RYNGKLDAPFLGDSLNEQDTTVREILG*
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mRNA from alignment at E_fasciculatus_S2_contig8853:1416..2149-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8853.16949.1 ID=mRNA_E_fasciculatus_S2_contig8853.16949.1|Name=mRNA_E_fasciculatus_S2_contig8853.16949.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=734bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8853:1416..2149- (Ectocarpus fasciculatus EfasUO2)
GGAAAATGGCGCCGTCCTTGGCTACGCCAGTGAGAAAGGGCGCCCGCTAT CCGTCAAGTTTCTTCTGCAACAGCGTCAGGGGAAATCTGATGAGGGGCGT CTCTACGTCGACAGCACATACGACGTGCGAGGCCGGACGCCCCTGGAGAG GTGCGCTTTAGCCACCAAGAGCTGCTGTAAAACTGCTCAAATGCTCATCG CCCACGGCGCGGACGCGACACCAGTTATCCTTAGGGTGGACAAGCTGTTT GAAGCCGTGGAGTCCATCCGTGCAGGCAATTTTCACTTGACAGAGGAATG CAGACTAAAGATGGAGGGCATTCGGCGCCTGCTTCTCCGGGCGGAAGCTA TTCGTGCTCTGTCTTGGGCGTGGCCCGGAGCGGCAAAGGGAGTGGTGGCT GTTCGCGCGACGGACACCCCGCCGAGGAGGATACTTCCGATCATGAGGCG CAGGGCTTGTAGGCCGAAGGTGCTCTTGGCGGCGCTGATCAGGTGAGCGA GCGTTGATTTTTGTATGATTTGTGGGTTTGTGTATTGTCTCCGTTCTTGC AACACGTTCAATTTTCTTACAGAGCTTGGTTCTCGTTCATCGCGAAAAAA GGTACAATGGCAAGCTCGACGCTCCTTTCCTCGGTGATAGCTTGAATGAA CAAGACACCACGGTGCGGGAGATTCTCGGATAAGTGGTACGAAACGTGGC GGAAAAGGTGGATTCAGAGATGCTGGAGGCGACG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8853:1416..2149-

>mRNA_E_fasciculatus_S2_contig8853.16949.1 ID=mRNA_E_fasciculatus_S2_contig8853.16949.1|Name=mRNA_E_fasciculatus_S2_contig8853.16949.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=384bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8853:1416..2149- (Ectocarpus fasciculatus EfasUO2)
ATGCTCATCGCCCACGGCGCGGACGCGACACCAGTTATCCTTAGGGTGGA
CAAGCTGTTTGAAGCCGTGGAGTCCATCCGTGCAGGCAATTTTCACTTGA
CAGAGGAATGCAGACTAAAGATGGAGGGCATTCGGCGCCTGCTTCTCCGG
GCGGAAGCTATTCGTGCTCTGTCTTGGGCGTGGCCCGGAGCGGCAAAGGG
AGTGGTGGCTGTTCGCGCGACGGACACCCCGCCGAGGAGGATACTTCCGA
TCATGAGGCGCAGGGCTTGTAGGCCGAAGGTGCTCTTGGCGGCGCTGATC
AGGTACAATGGCAAGCTCGACGCTCCTTTCCTCGGTGATAGCTTGAATGA
ACAAGACACCACGGTGCGGGAGATTCTCGGATAA
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