mRNA_E_fasciculatus_S2_contig8853.16950.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8853.16950.1
Unique NamemRNA_E_fasciculatus_S2_contig8853.16950.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8853.16950.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTV7_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 2.230e-10
Identity = 37/96 (38.54%), Postives = 55/96 (57.29%), Query Frame = -2 
Query:    2 GADPTLTVFMDHGRAKKEVVPLDLAVGYDKIEVVREFLRWGGIDKCGGKSHGGNALEFATEKENVGIMSLLLNAGVVENGAVLGYASEKGRPLSVK 289
            GA+  L       R  K V+PL+ A  +  +++V E ++  GI+ CGG S G  AL  A E  +VGI++LLL+AGVV+ G  L  A++ G    +K
Sbjct:  111 GANALLPKIDPESRNGKSVLPLEDAAEHGNLDIVHELVQLFGIEGCGGPSGGVGALANAAEFGHVGIVALLLDAGVVDTGETLALANDSGNSAVMK 206
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BLAST of mRNA_E_fasciculatus_S2_contig8853.16950.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL33_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 2.280e-8
Identity = 40/98 (40.82%), Postives = 52/98 (53.06%), Query Frame = -2 
Query:    2 RAGADPTLTVFMDHGRAKKEVVPLDLAVGYDKIEVVREFLRWGGIDKCGGKSHGGNALEFATEKENVGIMSLLLNAGVVENGAVLGYASEKGRPLSVK 295
            RA A+P LT     G      VPLD A  Y + EVVRE ++   I  CGG S G  AL  A   +NV +MS+L +AGV++ G  L  A+ +     VK
Sbjct:  171 RAKANPLLTKPTPSGVT---FVPLDTAAEYGQTEVVRELIKQVSIKGCGGASGGVYALRLAALSQNVDVMSVLADAGVMDTGEALITAAGRNDEAGVK 265
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BLAST of mRNA_E_fasciculatus_S2_contig8853.16950.1 vs.
Match: EsV-1-199 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNF8_ECTSI)

HSP 1 Score: 57.8 bits (138), Expect = 2.770e-7
Identity = 37/98 (37.76%), Postives = 52/98 (53.06%), Query Frame = -2 
Query:    2 RAGADPTLTVFMDHGRAKKEVVPLDLAVGYDKIEVVREFLRWGGIDKCGGKSHGGNALEFATEKENVGIMSLLLNAGVVENGAVLGYASEKGRPLSVK 295
            RA A+P LT     G      VPLD A  Y + EVV+E ++   I  CGG S G +AL  A   +NV +M++L + GV++ G  L  A+ +     VK
Sbjct:  171 RAKANPLLTKPTSSGVT---FVPLDTAAEYGQTEVVQELVQQVSIKGCGGASGGVDALRLAALSQNVDVMAVLADVGVMDTGEALITAAGRNDEAGVK 265
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BLAST of mRNA_E_fasciculatus_S2_contig8853.16950.1 vs.
Match: serine/threonine-protein (phosphatase 6 regulatory ankyrin repeat subunit B-like n=1 Tax=Haliotis rubra TaxID=36100 RepID=UPI001EE5C8EB)

HSP 1 Score: 53.9 bits (128), Expect = 8.560e-6
Identity = 36/125 (28.80%), Postives = 60/125 (48.00%), Query Frame = -2 
Query:   11 AEVNSRGNEGLTPLFISAKMGNRCAVEMLLRAGADPTLTVFMDHGRAKKEVVPLDLAVGYDKIEVVREFLRWGGIDKCGGKSHGGNALEFATEKENVGIMSLLLNAGVVENGAVLGYASEKGRPL 385
            A++ SRG +G TP+  +A+ GN+  V++L+  G    L+V  D GR    V  L      D + +V +    G  D       GG ++ +A E+ N  ++ LL+N      G  L    ++GR +
Sbjct:  234 ADIESRGEDGATPVMYAAEKGNKRVVDLLVNKGCK--LSVVDDRGRNILHVACLS-----DNVHIVEDLFLLGIADIESRGKDGGTSVMYAAEQGNKRVVDLLMN-----KGCKLSVVDDRGRNI 346
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8853.16950.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
Uncharacterized2.230e-1038.54protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.280e-840.82protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
EsV-1-1992.770e-737.76n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8... [more]
serine/threonine-protein8.560e-628.80phosphatase 6 regulatory ankyrin repeat subunit B-... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8853contigE_fasciculatus_S2_contig8853:2091..2485 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size396
Hectar predicted targeting categoryother localisation
Exons1
Cds size309
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842539.8826032-UTR-E_fasciculatus_S2_contig8853:2090..21761696842539.8826032-UTR-E_fasciculatus_S2_contig8853:2090..2176Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8853 2091..2176 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842539.8949044-CDS-E_fasciculatus_S2_contig8853:2176..24851696842539.8949044-CDS-E_fasciculatus_S2_contig8853:2176..2485Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8853 2177..2485 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8853.16950.1prot_E_fasciculatus_S2_contig8853.16950.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8853 2177..2485 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8853.16950.1

>prot_E_fasciculatus_S2_contig8853.16950.1 ID=prot_E_fasciculatus_S2_contig8853.16950.1|Name=mRNA_E_fasciculatus_S2_contig8853.16950.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=103bp
MIPTFSFSVANSSAFPPWLFPPHLSIPPQRRNSRTTSILSYPTARSSGTT
SFFARPWSMKTVNVGSAPARRSISTAQRFPIFAEMNNGVNPSFPRELTSA
PAF
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mRNA from alignment at E_fasciculatus_S2_contig8853:2091..2485+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8853.16950.1 ID=mRNA_E_fasciculatus_S2_contig8853.16950.1|Name=mRNA_E_fasciculatus_S2_contig8853.16950.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=395bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8853:2091..2485+ (Ectocarpus fasciculatus EfasUO2)
ACTTGACGGATAGCGGGCGCCCTTTCTCACTGGCGTAGCCAAGGACGGCG
CCATTTTCCACGACTCCGGCGTTCAACAACAAGCTCATGATACCGACGTT
CTCCTTTTCTGTGGCAAACTCGAGTGCATTCCCACCGTGGCTTTTCCCTC
CACATTTGTCTATTCCTCCCCAGCGCAGAAACTCGCGGACCACCTCGATT
TTGTCGTACCCGACCGCCAGGTCCAGCGGTACCACCTCTTTTTTTGCGCG
TCCATGGTCCATGAAGACGGTCAACGTCGGGTCCGCCCCCGCGCGAAGAA
GCATCTCGACCGCGCAACGGTTTCCCATTTTCGCTGAGATGAACAATGGA
GTCAATCCCTCATTTCCGCGAGAGTTGACCTCTGCACCCGCATTC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8853:2091..2485+

>mRNA_E_fasciculatus_S2_contig8853.16950.1 ID=mRNA_E_fasciculatus_S2_contig8853.16950.1|Name=mRNA_E_fasciculatus_S2_contig8853.16950.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=309bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8853:2091..2485+ (Ectocarpus fasciculatus EfasUO2)
ATGATACCGACGTTCTCCTTTTCTGTGGCAAACTCGAGTGCATTCCCACC
GTGGCTTTTCCCTCCACATTTGTCTATTCCTCCCCAGCGCAGAAACTCGC
GGACCACCTCGATTTTGTCGTACCCGACCGCCAGGTCCAGCGGTACCACC
TCTTTTTTTGCGCGTCCATGGTCCATGAAGACGGTCAACGTCGGGTCCGC
CCCCGCGCGAAGAAGCATCTCGACCGCGCAACGGTTTCCCATTTTCGCTG
AGATGAACAATGGAGTCAATCCCTCATTTCCGCGAGAGTTGACCTCTGCA
CCCGCATTC
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