mRNA_E_fasciculatus_S2_contig884.16937.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig884.16937.1
Unique NamemRNA_E_fasciculatus_S2_contig884.16937.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig884.16937.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUL0_ECTSI)

HSP 1 Score: 311 bits (797), Expect = 6.790e-107
Identity = 160/168 (95.24%), Postives = 164/168 (97.62%), Query Frame = 1 
Query:    1 MSATGFGICGQKNSYSSKTKCGNWVEDRIGKAVAERLAKAPRPALGSTVEREDFVHPSTMTNNTVLSGDDTKMMSASDIKDKNREGVSFDLLFGHVRDSQHADTLRQDRFLTNAWESFPVTGAMSSQVRERSARARDFRTRQRLTEMARDRRQSETLTTTARLQSSRA 504
            MSATGFGICGQKNSYSSKTKCGNWVEDRIGKA+A+RLAKAPRPALGSTVEREDFVHPSTMTNNTV+SGDDTKMMSASDIKDKNREGVSFDLLFGHVRDS HADTLRQDRFLTNAWESFPVT  MSSQVRERSARARDFRTRQRL EMARDRRQS+TLTTTARLQSSRA
Sbjct:    1 MSATGFGICGQKNSYSSKTKCGNWVEDRIGKAIAKRLAKAPRPALGSTVEREDFVHPSTMTNNTVVSGDDTKMMSASDIKDKNREGVSFDLLFGHVRDSHHADTLRQDRFLTNAWESFPVTSVMSSQVRERSARARDFRTRQRLAEMARDRRQSQTLTTTARLQSSRA 168
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BLAST of mRNA_E_fasciculatus_S2_contig884.16937.1 vs.
Match: Hypothetical (protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWY1_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 1.990e-17
Identity = 52/123 (42.28%), Postives = 69/123 (56.10%), Query Frame = 1 
Query:    1 MSATGFGICGQKNSYSSKTKCGNWVEDRIGKAVAERLAKAPRPALGSTVEREDFVHPSTMTNNTVLSGDDTKMMSASDIKDKNREGVSFDLLFGHVRDSQHADTLRQDRFLTNAWESFPVTGA 369
            MS  GFGI G KN+YSS  +CGNWVED IG  +A          +  T  R DF +PS +T   V   D+ KM ++ +IK +NR+G S+DL+F H      AD L+  R+ T   +SF   GA
Sbjct:    1 MSGQGFGISGHKNNYSSSVRCGNWVEDLIGDELANTRPGTRMDLM--TTNRADFRNPSRVTTPHVP--DNIKMETSREIKQRNRDGQSYDLIFTHCLSEDPAD-LQSQRYKTTVGKSFSGGGA 118
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BLAST of mRNA_E_fasciculatus_S2_contig884.16937.1 vs.
Match: Aste57867_12769 (protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KWH6_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 3.400e-5
Identity = 37/96 (38.54%), Postives = 52/96 (54.17%), Query Frame = 1 
Query:    1 MSATGFGICGQKNSYSSKTKCGNWVEDRIGKAVAERLAKAPRPALGSTVEREDFVHPSTM-TNNTVLSGDDTKMMSASDIKDKNREGVSFDLLFGH 285
            MSA G+GI G KNS+SS+ K GN+VED+ G  +A      P    G T  ++ F  PS + T+ TV    + +  S        R G+S++LLF H
Sbjct:    1 MSA-GYGISGHKNSFSSRVKIGNYVEDQYGAKLARESVACPMN--GKTEVQDKFGDPSAIHTSETVPPTPEAETQSYVQ-----RTGLSYNLLFPH 88
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig884.16937.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Uncharacterized6.790e-10795.24protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Hypothetical1.990e-1742.28protein n=1 Tax=Fibrocapsa japonica TaxID=94617 Re... [more]
Aste57867_127693.400e-538.54protein n=1 Tax=Aphanomyces stellatus TaxID=120398... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig884contigE_fasciculatus_S2_contig884:13338..15951 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score313.2
Seed ortholog evalue7.7e-83
Seed eggNOG ortholog2880.D7FUL0
Model size510
Hectar predicted targeting categoryother localisation
Exons5
EggNOG OGs2E8UQ@1,2SF9R@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-02_002840.1
Cds size510
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842538.8837268-CDS-E_fasciculatus_S2_contig884:13337..134201696842538.8837268-CDS-E_fasciculatus_S2_contig884:13337..13420Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig884 13338..13420 +
1696842538.905466-CDS-E_fasciculatus_S2_contig884:14095..142431696842538.905466-CDS-E_fasciculatus_S2_contig884:14095..14243Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig884 14096..14243 +
1696842538.9246247-CDS-E_fasciculatus_S2_contig884:14775..148651696842538.9246247-CDS-E_fasciculatus_S2_contig884:14775..14865Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig884 14776..14865 +
1696842538.9375286-CDS-E_fasciculatus_S2_contig884:15083..151431696842538.9375286-CDS-E_fasciculatus_S2_contig884:15083..15143Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig884 15084..15143 +
1696842538.951054-CDS-E_fasciculatus_S2_contig884:15822..159511696842538.951054-CDS-E_fasciculatus_S2_contig884:15822..15951Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig884 15823..15951 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig884.16937.1prot_E_fasciculatus_S2_contig884.16937.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig884 13338..15951 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig884.16937.1

>prot_E_fasciculatus_S2_contig884.16937.1 ID=prot_E_fasciculatus_S2_contig884.16937.1|Name=mRNA_E_fasciculatus_S2_contig884.16937.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=170bp
MSATGFGICGQKNSYSSKTKCGNWVEDRIGKAVAERLAKAPRPALGSTVE
REDFVHPSTMTNNTVLSGDDTKMMSASDIKDKNREGVSFDLLFGHVRDSQ
HADTLRQDRFLTNAWESFPVTGAMSSQVRERSARARDFRTRQRLTEMARD
RRQSETLTTTARLQSSRAS*
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mRNA from alignment at E_fasciculatus_S2_contig884:13338..15951+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig884.16937.1 ID=mRNA_E_fasciculatus_S2_contig884.16937.1|Name=mRNA_E_fasciculatus_S2_contig884.16937.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2614bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig884:13338..15951+ (Ectocarpus fasciculatus EfasUO2)
ATGAGTGCCACAGGTTTCGGTATCTGTGGGCAGAAGAACTCGTACAGCTC
CAAGACAAAATGCGGAAACTGGGTTGAAGATAGGTGAGAACCACACAGAA
CCGGCGCGTGATTGATGCCTACCGCATAGACTGGATGTGGATTCATGTGC
GGATTGCAGGCTACATGTCTTGTAGAAGGAGACGGTGACTGTCAGACGAG
CTATGTACAATGTATGCAGTCCACCGCGTCGGCGCCGAAAATAGTCTGTC
TATGCTGTACCTGTTGTGTCGTGACCAAACCTGCCATGATTGCGATTTGG
GTGCGCTGCACTTAACATACCATACGCATGAGCCCCCACACAATGGCGTC
CATCTACCCAGAGTTAAATAGACGAGGTCGGCGACCTTTTTCTGTTGAAG
GGTGTGCGTCGAGGCGCTTGGTGGCCGCGATTCCCTCGGCAGGTTTCATC
AGCAACACGTTGCACTTCGTTCTCTCGTCTACTGAAACTTCTCGATAGAA
TGATAACTACAAAGCGTCTTGTCAACAGTGCAGCACACCAGGCAAAGGGT
TTTTACAAGTAGTGTTTTCAAATCTATGTGGCTCACGATGCCATGCAATT
TTGGCTGCTGTTGGCAACACATTGCTGAAAAGTGGTCTGACTTACCATGC
ACAAATTAAATTGTAACTCGGTGCCTCGACTTCCGTGCTGTTGGAATTGT
ACAGAAGTTTAGTTTCAGTGGTCACCTGAACCACGCCCCTTTATGACATG
TCGTGCAGGATCGGGAAGGCCGTAGCTGAAAGGCTGGCGAAGGCTCCCCG
GCCGGCCCTTGGCTCGACCGTGGAGCGCGAGGACTTTGTCCATCCAAGCA
CCATGACGAACAACACCGTGCTGTCAGGAGACGACACGAAGATGATGTCT
GCGTCGGTGAGAACCAAAGGAGGTGTGTGTTCACAGCAGCAGCAGCAGGG
ACGGACGCACACCGAAATAGGCAGACAGGCCGCATCATTCCTGAATGCAT
CTACTTTACGTGGTACACCTGGTGTGCACATCATCAATTCGACTTACATT
AGCTGGTGGTGGTTGCTAAACTTGTACTTGTTCCGAGGAGGACATTTACT
GGGACTCCTTGCTTCGTGGTAGCTCACACTTTCCTTCTACAGTTGCCACA
GAGGAATTATCTGTTCGAAGCGATTGCAGAAGCTGCGGCAGGTCGCGGAG
GCCTGGAACAGCTGCTTTGTCTAGAAGAACAGAGCAACAAGCCTTCACAA
AACCATCACGAAGTATCATGAACAATGAAATGCAGCACCCTGACTACTCC
GGTTTCTGCAGGCAGTTCGATTTGAATGTGATGCAGTTTGAAAGAAAATC
GCATCGGCGGGGATGCGAAAGGACGAAGTGAATCAATCGTATGGCCTTCT
TCCGTGTCGAAATTAAAAATTTGGGAAAACAACTTCAGGATATCAAGGAC
AAGAACCGCGAGGGCGTTTCTTTTGACCTGCTCTTCGGCCACGTCCGAGA
CAGCCAACACGCTGATACCTTGCGGCAGGTATGCAGAAGAGCATTTTGTT
GTGGGTTGGAAACCATGCGTGATGGAGGACAGCGCTTTTTGTTTTGCATG
ATTGATGTTTGCTTCGAACAGCATGCAAGTGGCGTTTTAAGGATCTCTAA
CCTCTGCATCGTGCAAGGTTCGTTCGTCGTCGATGACCAAACGGCTGAGG
CACTCGTCATATGACCTTTCTCCCATCTCTTCCCTCGTGCTTCCAGGACC
GCTTCCTAACAAATGCCTGGGAGTCGTTCCCGGTGACGGGTGCCATGTCT
TCTCAGGTGAGAGATCTCCCACGCCTTGGGTAATTCTGCGAAAGGCAGTC
CGAATCTTCTCGTCGTAGTATGCGGCCCAGCCCCCACGGGGTGGATTTCC
TGCAGACGCGGTTGCCCCTCTTCAGTGGTTGTGTCGTCGAAATATCACTT
GGTTTACATGTCGATCTCCTACGTCAAATAACCCAACACTGTGTTGTCCG
ACCTTCTCTACACCGTTGATTACCACCCACCAAAGTTTTGGGTAACCTAC
TTACAGGTACGCTCTGCCATTCGCATGTGGCGTTCTCTCAACGCTTTACC
TGGAAAGAGCCTCCGTCAAGTGTGCGTAGATCACAGGCTGCGCTTCGCAG
TGTTCTCACCAGCGAGGAAAGCAGGCTATCATTTTTGTTGATGGTCAGGT
GGAAGGGGACAATATCCCGCTTTATTGATGCATTGGTGTTGCCCCAAGAA
GGAGTATTTCGACGGGGGTCTCAGTTTGAGTCTACGGCTCGACAGCTGGC
CTGGTAATTGGTACAAGCCACCCGGGCGGGCTTAAACCACACACTTTCCA
CTTTGCTCCCCCTCCCGTCAATGGTTCTCGAGGAGCGTCAAGTGGGGCCT
ACGGTCTGACTGAATCATGTTGGCCCTTCTTGACAAGCGAGTGAATCCGC
CCTGATTCGCATCTATCGGTGATACGACAACCCAGGTCCGAGAGCGCTCT
GCTCGCGCCCGCGACTTTCGCACCCGCCAGCGCCTCACGGAGATGGCCCG
CGACCGCCGGCAGTCGGAGACGTTGACAACAACGGCCAGGCTACAGAGCT
CCCGGGCATCGTAA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig884:13338..15951+

>mRNA_E_fasciculatus_S2_contig884.16937.1 ID=mRNA_E_fasciculatus_S2_contig884.16937.1|Name=mRNA_E_fasciculatus_S2_contig884.16937.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=510bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig884:13338..15951+ (Ectocarpus fasciculatus EfasUO2)
ATGAGTGCCACAGGTTTCGGTATCTGTGGGCAGAAGAACTCGTACAGCTC
CAAGACAAAATGCGGAAACTGGGTTGAAGATAGGATCGGGAAGGCCGTAG
CTGAAAGGCTGGCGAAGGCTCCCCGGCCGGCCCTTGGCTCGACCGTGGAG
CGCGAGGACTTTGTCCATCCAAGCACCATGACGAACAACACCGTGCTGTC
AGGAGACGACACGAAGATGATGTCTGCGTCGGATATCAAGGACAAGAACC
GCGAGGGCGTTTCTTTTGACCTGCTCTTCGGCCACGTCCGAGACAGCCAA
CACGCTGATACCTTGCGGCAGGACCGCTTCCTAACAAATGCCTGGGAGTC
GTTCCCGGTGACGGGTGCCATGTCTTCTCAGGTCCGAGAGCGCTCTGCTC
GCGCCCGCGACTTTCGCACCCGCCAGCGCCTCACGGAGATGGCCCGCGAC
CGCCGGCAGTCGGAGACGTTGACAACAACGGCCAGGCTACAGAGCTCCCG
GGCATCGTAA
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