mRNA_E_fasciculatus_S2_contig8835.16930.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8835.16930.1
Unique NamemRNA_E_fasciculatus_S2_contig8835.16930.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8835.16930.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZL5_9PHAE)

HSP 1 Score: 154 bits (389), Expect = 2.750e-45
Identity = 73/74 (98.65%), Postives = 73/74 (98.65%), Query Frame = 1 
Query:    1 WQILIEPSKYPLSENDLLFSKRLESVRKDVECFFGILKGRFRILKLAMAYQSQERIDNVFFTCCILHNMLHTFD 222
            WQILIEPSKYPLSENDLLF KRLESVRKDVECFFGILKGRFRILKLAMAYQSQERIDNVFFTCCILHNMLHTFD
Sbjct:   18 WQILIEPSKYPLSENDLLFLKRLESVRKDVECFFGILKGRFRILKLAMAYQSQERIDNVFFTCCILHNMLHTFD 91
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8835.16930.1 vs.
Match: DDE (Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUX7_9PHAE)

HSP 1 Score: 154 bits (390), Expect = 1.790e-43
Identity = 73/74 (98.65%), Postives = 74/74 (100.00%), Query Frame = 1 
Query:    1 WQILIEPSKYPLSENDLLFSKRLESVRKDVECFFGILKGRFRILKLAMAYQSQERIDNVFFTCCILHNMLHTFD 222
            WQILIEPSKYPLSE+DLLFSKRLESVRKDVECFFGILKGRFRILKLAMAYQSQERIDNVFFTCCILHNMLHTFD
Sbjct:  182 WQILIEPSKYPLSEDDLLFSKRLESVRKDVECFFGILKGRFRILKLAMAYQSQERIDNVFFTCCILHNMLHTFD 255
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8835.16930.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSK2_ECTSI)

HSP 1 Score: 150 bits (379), Expect = 3.200e-42
Identity = 71/74 (95.95%), Postives = 72/74 (97.30%), Query Frame = 1 
Query:    1 WQILIEPSKYPLSENDLLFSKRLESVRKDVECFFGILKGRFRILKLAMAYQSQERIDNVFFTCCILHNMLHTFD 222
            WQILIEPSKYPLSENDLLFSKRLESVRKDVECFFGILKGR RIL LAMA+QSQERIDNVFFTCCILHNMLHTFD
Sbjct:  137 WQILIEPSKYPLSENDLLFSKRLESVRKDVECFFGILKGRLRILMLAMAFQSQERIDNVFFTCCILHNMLHTFD 210
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8835.16930.1 vs.
Match: DDE (Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNX4_9PHAE)

HSP 1 Score: 150 bits (379), Expect = 7.480e-41
Identity = 72/74 (97.30%), Postives = 72/74 (97.30%), Query Frame = 1 
Query:    1 WQILIEPSKYPLSENDLLFSKRLESVRKDVECFFGILKGRFRILKLAMAYQSQERIDNVFFTCCILHNMLHTFD 222
            WQILIEPSKYPLSENDLLFSKRLESVRKDVECFFGILKGRFRILKLAM YQSQERIDNVFFTC ILHNMLHTFD
Sbjct:  292 WQILIEPSKYPLSENDLLFSKRLESVRKDVECFFGILKGRFRILKLAMEYQSQERIDNVFFTCYILHNMLHTFD 365
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8835.16930.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXJ4_9PHAE)

HSP 1 Score: 139 bits (349), Expect = 8.480e-40
Identity = 69/93 (74.19%), Postives = 73/93 (78.49%), Query Frame = 1 
Query:   13 IEPSKYPLSENDLLFSKRLESVRKDVECFFGILKGRFRILKLAMAYQSQERIDNVFFTCCILHNMLHTFD--------TAWTSWWRTRTGLAV 267
            +EP+KYPLSEND+LFSKRLESVRKDVECFFGILKGRFRILKL MAY  QERIDNVFFTCCILHNMLH FD        T W S     TG+A 
Sbjct:    1 MEPTKYPLSENDILFSKRLESVRKDVECFFGILKGRFRILKLVMAYHEQERIDNVFFTCCILHNMLHIFDGMDQLVENTLWVSGAGAGTGVAT 93
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8835.16930.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI0_9PHAE)

HSP 1 Score: 143 bits (361), Expect = 1.380e-38
Identity = 71/97 (73.20%), Postives = 77/97 (79.38%), Query Frame = 1 
Query:    1 WQILIEPSKYPLSENDLLFSKRLESVRKDVECFFGILKGRFRILKLAMAYQSQERIDNVFFTCCILHNMLHTFD--------TAWTSWWRTRTGLAV 267
            W+IL+EP+KYPLSEND+LFSKRLESVRKDVECFFGILKG FRI K+AMAY  QERIDNVFFTCCILHNMLHTFD        T W S     TG+A 
Sbjct:  277 WKILMEPTKYPLSENDILFSKRLESVRKDVECFFGILKGCFRIQKVAMAYHEQERIDNVFFTCCILHNMLHTFDGMDQLVENTLWVSSAGAGTGVAT 373
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8835.16930.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8U1_9PHAE)

HSP 1 Score: 136 bits (343), Expect = 3.490e-38
Identity = 63/70 (90.00%), Postives = 67/70 (95.71%), Query Frame = 1 
Query:   13 IEPSKYPLSENDLLFSKRLESVRKDVECFFGILKGRFRILKLAMAYQSQERIDNVFFTCCILHNMLHTFD 222
            +EP++YPLSE D+LFSKRLESVRKDVECFFGILKGRFRILKLAMAY  QERIDNVFFTCCILHNMLHTFD
Sbjct:    1 MEPTEYPLSEKDILFSKRLESVRKDVECFFGILKGRFRILKLAMAYPEQERIDNVFFTCCILHNMLHTFD 70
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8835.16930.1 vs.
Match: DDE (Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTS2_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 6.050e-37
Identity = 68/85 (80.00%), Postives = 73/85 (85.88%), Query Frame = 3 
Query:  177 VFHVLHLAQHAAHLRHGMDQLVENTNWIGSAGVGATLATEPEADCGSVGTKDVNDQPQLEIGHTVRKRQLTTSFAYRKKHKKDIV 431
            VF    +  +  H   G+DQLVENTNW+ SAGVGATLATEPE+DCGSVGTKDVNDQPQLEIGHTVRKRQLTTSFAYRKKHKKDIV
Sbjct:  307 VFFTCCILHNMLHTFDGIDQLVENTNWVSSAGVGATLATEPESDCGSVGTKDVNDQPQLEIGHTVRKRQLTTSFAYRKKHKKDIV 391
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8835.16930.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE2_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 6.410e-36
Identity = 65/74 (87.84%), Postives = 68/74 (91.89%), Query Frame = 1 
Query:    1 WQILIEPSKYPLSENDLLFSKRLESVRKDVECFFGILKGRFRILKLAMAYQSQERIDNVFFTCCILHNMLHTFD 222
            W++LIEPSKYPLSE DLLFSKRLESVRKDVECFFGILK RFRILKLAM YQ QER+D VFFTCCILHNMLHT D
Sbjct:  306 WRMLIEPSKYPLSEADLLFSKRLESVRKDVECFFGILKMRFRILKLAMTYQKQERLDYVFFTCCILHNMLHTHD 379
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8835.16930.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0X4_9PHAE)

HSP 1 Score: 137 bits (344), Expect = 1.320e-35
Identity = 65/74 (87.84%), Postives = 69/74 (93.24%), Query Frame = 1 
Query:    1 WQILIEPSKYPLSENDLLFSKRLESVRKDVECFFGILKGRFRILKLAMAYQSQERIDNVFFTCCILHNMLHTFD 222
            WQILIEPSKYPLSENDLLFSKRL+SVR+D     GILKGRFRILKLAMAYQSQERID+VFFTCCI+HNMLHTFD
Sbjct:  313 WQILIEPSKYPLSENDLLFSKRLDSVRRDGSASDGILKGRFRILKLAMAYQSQERIDDVFFTCCIMHNMLHTFD 386
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8835.16930.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized2.750e-4598.65protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
DDE1.790e-4398.65Tnp4 domain-containing protein n=1 Tax=Ectocarpus ... [more]
Uncharacterized3.200e-4295.95protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
DDE7.480e-4197.30Tnp4 domain-containing protein n=1 Tax=Ectocarpus ... [more]
Uncharacterized8.480e-4074.19protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.380e-3873.20protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized3.490e-3890.00protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
DDE6.050e-3780.00Tnp4 domain-containing protein n=1 Tax=Ectocarpus ... [more]
Uncharacterized6.410e-3687.84protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.320e-3587.84protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8835contigE_fasciculatus_S2_contig8835:4920..5353 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score151.8
Seed ortholog evalue2.5e-34
Seed eggNOG ortholog2880.D7FSK2
Model size434
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.Plant transposon protein
EggNOG OGs2E2RF@1,2S9YA@2759
Cds size432
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842538.263018-CDS-E_fasciculatus_S2_contig8835:4919..53511696842538.263018-CDS-E_fasciculatus_S2_contig8835:4919..5351Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8835 4920..5351 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8835.16930.1prot_E_fasciculatus_S2_contig8835.16930.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8835 4920..5351 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8835.16930.1

>prot_E_fasciculatus_S2_contig8835.16930.1 ID=prot_E_fasciculatus_S2_contig8835.16930.1|Name=mRNA_E_fasciculatus_S2_contig8835.16930.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=144bp
WQILIEPSKYPLSENDLLFSKRLESVRKDVECFFGILKGRFRILKLAMAY
QSQERIDNVFFTCCILHNMLHTFDTAWTSWWRTRTGLAVLGWGPRWRRSR
RRTVDLSGRRTSTTSLNWRSGTRCASDSSPRASRTARSTRRTLS
back to top

mRNA from alignment at E_fasciculatus_S2_contig8835:4920..5353+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8835.16930.1 ID=mRNA_E_fasciculatus_S2_contig8835.16930.1|Name=mRNA_E_fasciculatus_S2_contig8835.16930.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=434bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8835:4920..5353+ (Ectocarpus fasciculatus EfasUO2)
TGGCAAATCCTGATCGAGCCCTCCAAGTACCCGCTGAGCGAGAACGACCT
GCTCTTTTCGAAGAGGCTGGAGAGCGTACGCAAGGACGTGGAGTGCTTCT
TCGGCATCCTGAAGGGTCGCTTTAGGATCCTGAAGCTCGCCATGGCGTAC
CAGAGCCAGGAGCGCATCGACAACGTGTTTTTCACGTGCTGCATCTTGCA
CAACATGCTGCACACCTTCGACACGGCATGGACCAGCTGGTGGAGAACAC
GAACTGGATTGGCAGTGCTGGGGTGGGGGCCACGTTGGCGACGGAGCCGG
AGGCGGACTGTGGATCTGTCGGGACGAAGGACGTCAACGACCAGCCTCAA
TTGGAGATCGGGCACACGGTGCGCAAGCGACAGCTCACCACGAGCTTCGC
GTACCGCAAGAAGCACAAGAAGGACATTGTCTGG
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8835:4920..5353+

>mRNA_E_fasciculatus_S2_contig8835.16930.1 ID=mRNA_E_fasciculatus_S2_contig8835.16930.1|Name=mRNA_E_fasciculatus_S2_contig8835.16930.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=432bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8835:4920..5353+ (Ectocarpus fasciculatus EfasUO2)
TGGCAAATCCTGATCGAGCCCTCCAAGTACCCGCTGAGCGAGAACGACCT
GCTCTTTTCGAAGAGGCTGGAGAGCGTACGCAAGGACGTGGAGTGCTTCT
TCGGCATCCTGAAGGGTCGCTTTAGGATCCTGAAGCTCGCCATGGCGTAC
CAGAGCCAGGAGCGCATCGACAACGTGTTTTTCACGTGCTGCATCTTGCA
CAACATGCTGCACACCTTCGACACGGCATGGACCAGCTGGTGGAGAACAC
GAACTGGATTGGCAGTGCTGGGGTGGGGGCCACGTTGGCGACGGAGCCGG
AGGCGGACTGTGGATCTGTCGGGACGAAGGACGTCAACGACCAGCCTCAA
TTGGAGATCGGGCACACGGTGCGCAAGCGACAGCTCACCACGAGCTTCGC
GTACCGCAAGAAGCACAAGAAGGACATTGTCT
back to top