mRNA_E_fasciculatus_S2_contig8835.16929.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E_fasciculatus_S2_contig8835.16929.1
Unique Name	mRNA_E_fasciculatus_S2_contig8835.16929.1
Type	mRNA
Organism	Ectocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)

Homology

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BLAST of mRNA_E_fasciculatus_S2_contig8835.16929.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSK2_ECTSI)

HSP 1 Score: 267 bits (682), Expect = 3.980e-88
Identity = 123/136 (90.44%), Postives = 131/136 (96.32%), Query Frame = 1

Query:    1 MYDEHIHLPTEESGKLDHVMKQNDRLGFTGAVGSMDVTHIAWSRCPYNQARSYTGKEGFPTIAYEVTVDHTGRAMAVTEGFTGSTNDKTIVCWDAAVEKIRTDKQYTEKTFDVYNEDGTTTTLKGCYLLVDNGYHR 408
            MYDEHIHLPTEESGKLD V++Q DRLGFTGA+GSMDVTHIAWSRCPYNQARSYTGKEGFPTI Y+VTVDH GRA+AVTEGFTGSTNDKT VCWDAAVEKIRTDKQYTEKTFDVYN+DGTTTTLKGCY+LVDNGYH+
Sbjct:    1 MYDEHIHLPTEESGKLDLVIEQYDRLGFTGAMGSMDVTHIAWSRCPYNQARSYTGKEGFPTIGYQVTVDHAGRAIAVTEGFTGSTNDKTTVCWDAAVEKIRTDKQYTEKTFDVYNQDGTTTTLKGCYVLVDNGYHK 136

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BLAST of mRNA_E_fasciculatus_S2_contig8835.16929.1 vs.
Match: DDE (Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNX4_9PHAE)

HSP 1 Score: 256 bits (655), Expect = 4.090e-82
Identity = 127/164 (77.44%), Postives = 130/164 (79.27%), Query Frame = 1

Query:    1 MYDEHIHLPTEESGKLDHVMKQNDRLGFTGAVGSMDVTHIAWSRCPYNQARSYTGKEGFPTIAYEVTVDHTGRAMAVTEGFTGSTNDKTIVCWDAAVEKIRTDKQYT----------------------------EKTFDVYNEDGTTTTLKGCYLLVDNGYHR 408
            MYDE IHLPTEESGKLDHVMKQ DRLGFTGAVGSMDVTHIAWSRCPYNQARSYTGKEGFPTIAY+VTVDH GRA+AVTEGFTGSTNDKTIVCWD AVEKI TDK YT                            EKTFDVYNEDGTTTTLKGCYLLVDNGYH+
Sbjct:  128 MYDEQIHLPTEESGKLDHVMKQYDRLGFTGAVGSMDVTHIAWSRCPYNQARSYTGKEGFPTIAYQVTVDHAGRAIAVTEGFTGSTNDKTIVCWDTAVEKIWTDKHYTXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKTFDVYNEDGTTTTLKGCYLLVDNGYHK 291

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BLAST of mRNA_E_fasciculatus_S2_contig8835.16929.1 vs.
Match: Transposon (protein, putative, Pong sub-class n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPI7_ECTSI)

HSP 1 Score: 255 bits (652), Expect = 4.700e-82
Identity = 116/136 (85.29%), Postives = 128/136 (94.12%), Query Frame = 1

Query:    1 MYDEHIHLPTEESGKLDHVMKQNDRLGFTGAVGSMDVTHIAWSRCPYNQARSYTGKEGFPTIAYEVTVDHTGRAMAVTEGFTGSTNDKTIVCWDAAVEKIRTDKQYTEKTFDVYNEDGTTTTLKGCYLLVDNGYHR 408
            MYDEHI+LP+E++G+LDHVMKQ DRLGF+GA+GSMDVTHI W++CPYN  RSYTGKEG PTI Y+VTV+H GRA AVTEGFTGSTNDKTIVCWDAAVEKIRTDKQYTEKTFDVYNEDGTTTTLKGCYLLVDNGYH+
Sbjct:  168 MYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIVWNKCPYNLPRSYTGKEGVPTIGYQVTVNHAGRASAVTEGFTGSTNDKTIVCWDAAVEKIRTDKQYTEKTFDVYNEDGTTTTLKGCYLLVDNGYHK 303

[Close]

BLAST of mRNA_E_fasciculatus_S2_contig8835.16929.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI0_9PHAE)

HSP 1 Score: 251 bits (640), Expect = 1.920e-80
Identity = 113/136 (83.09%), Postives = 126/136 (92.65%), Query Frame = 1

Query:    1 MYDEHIHLPTEESGKLDHVMKQNDRLGFTGAVGSMDVTHIAWSRCPYNQARSYTGKEGFPTIAYEVTVDHTGRAMAVTEGFTGSTNDKTIVCWDAAVEKIRTDKQYTEKTFDVYNEDGTTTTLKGCYLLVDNGYHR 408
            MYDEHI+LP+E++G+LDHVMKQ DRLGF+GA+GSMDVTHI WS+CPYN ARSYTGKEG PT+ Y+VTV+H GRA+AVTEGFT STNDKT VCWDA VEKIRTD QYTEKTFDVYNEDGTTTTLKGCYLLVDNGYH+
Sbjct:  141 MYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIGWSKCPYNLARSYTGKEGVPTVGYQVTVNHAGRAIAVTEGFTDSTNDKTTVCWDAVVEKIRTDNQYTEKTFDVYNEDGTTTTLKGCYLLVDNGYHK 276

[Close]

BLAST of mRNA_E_fasciculatus_S2_contig8835.16929.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCA4_9PHAE)

HSP 1 Score: 215 bits (547), Expect = 9.950e-70
Identity = 107/136 (78.68%), Postives = 110/136 (80.88%), Query Frame = 1

Query:    1 MYDEHIHLPTEESGKLDHVMKQNDRLGFTGAVGSMDVTHIAWSRCPYNQARSYTGKEGFPTIAYEVTVDHTGRAMAVTEGFTGSTNDKTIVCWDAAVEKIRTDKQYTEKTFDVYNEDGTTTTLKGCYLLVDNGYHR 408
            MYDE IHLPTEESGKLDHVMKQ                      CPYNQARS TG+EGFPTIAYEVTVDH GRA+AVTEGFTGSTNDKTIVCWDAAVEKIRTDKQYTEKTFDVYNEDGTTTTLKGCYLLV NGYH+
Sbjct:   24 MYDEQIHLPTEESGKLDHVMKQ----------------------CPYNQARSITGEEGFPTIAYEVTVDHAGRAIAVTEGFTGSTNDKTIVCWDAAVEKIRTDKQYTEKTFDVYNEDGTTTTLKGCYLLVVNGYHK 137

[Close]

BLAST of mRNA_E_fasciculatus_S2_contig8835.16929.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFR8_9PHAE)

HSP 1 Score: 225 bits (574), Expect = 1.010e-69
Identity = 103/129 (79.84%), Postives = 115/129 (89.15%), Query Frame = 1

Query:   22 LPTEESGKLDHVMKQNDRLGFTGAVGSMDVTHIAWSRCPYNQARSYTGKEGFPTIAYEVTVDHTGRAMAVTEGFTGSTNDKTIVCWDAAVEKIRTDKQYTEKTFDVYNEDGTTTTLKGCYLLVDNGYHR 408
            +  + + +LDHVM+Q DRLGF+G++GSMDVTHI WS+CPYN ARSYTGKEG P I Y+V V H GRA+AVTEGFT STNDKTIVCWDAAVEKIRTDKQYTEKTFDVYNEDGTTTTLKGCYLLVDNGYH+
Sbjct:  184 MSAKTNDELDHVMEQYDRLGFSGSMGSMDVTHIGWSKCPYNLARSYTGKEGVPAIGYQVMVSHAGRAIAVTEGFTCSTNDKTIVCWDAAVEKIRTDKQYTEKTFDVYNEDGTTTTLKGCYLLVDNGYHK 312

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BLAST of mRNA_E_fasciculatus_S2_contig8835.16929.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE2_9PHAE)

HSP 1 Score: 222 bits (566), Expect = 1.520e-68
Identity = 100/136 (73.53%), Postives = 117/136 (86.03%), Query Frame = 1

Query:    1 MYDEHIHLPTEESGKLDHVMKQNDRLGFTGAVGSMDVTHIAWSRCPYNQARSYTGKEGFPTIAYEVTVDHTGRAMAVTEGFTGSTNDKTIVCWDAAVEKIRTDKQYTEKTFDVYNEDGTTTTLKGCYLLVDNGYHR 408
            MYDEHI LP+EE+G+LD VM Q ++LGF GA+GS DVTHI WSRCPYNQ RSYTGKEG PT+ Y+VTV+H GR +AVTEGFTGSTNDKTI+C D AV++IRTDKQY EK F V+ +DGTT TLKGCYL+VDNGYH+
Sbjct:  170 MYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGRSYTGKEGKPTVGYQVTVNHAGRVLAVTEGFTGSTNDKTIICCDEAVDRIRTDKQYAEKPFTVHKKDGTTETLKGCYLIVDNGYHK 305

[Close]

BLAST of mRNA_E_fasciculatus_S2_contig8835.16929.1 vs.
Match: DDE (Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUX7_9PHAE)

HSP 1 Score: 216 bits (551), Expect = 8.890e-68
Identity = 105/136 (77.21%), Postives = 111/136 (81.62%), Query Frame = 1

Query:    1 MYDEHIHLPTEESGKLDHVMKQNDRLGFTGAVGSMDVTHIAWSRCPYNQARSYTGKEGFPTIAYEVTVDHTGRAMAVTEGFTGSTNDKTIVCWDAAVEKIRTDKQYTEKTFDVYNEDGTTTTLKGCYLLVDNGYHR 408
            MYDEHIHLP EESGKL HVMKQ DRLG                 CPYNQARSYTGK+ FPTIAY+VTVDH  RA+AVTEGFTGSTNDKTIVCWDAAV+KIRTDKQYTEKTFD+YNEDGTTTTLKGCY L DNGYH+
Sbjct:   63 MYDEHIHLPAEESGKLHHVMKQYDRLG-----------------CPYNQARSYTGKDWFPTIAYQVTVDHASRAIAVTEGFTGSTNDKTIVCWDAAVDKIRTDKQYTEKTFDLYNEDGTTTTLKGCYFLDDNGYHK 181

[Close]

BLAST of mRNA_E_fasciculatus_S2_contig8835.16929.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE)

HSP 1 Score: 193 bits (490), Expect = 6.060e-57
Identity = 94/136 (69.12%), Postives = 105/136 (77.21%), Query Frame = 1

Query:    1 MYDEHIHLPTEESGKLDHVMKQNDRLGFTGAVGSMDVTHIAWSRCPYNQARSYTGKEGFPTIAYEVTVDHTGRAMAVTEGFTGSTNDKTIVCWDAAVEKIRTDKQYTEKTFDVYNEDGTTTTLKGCYLLVDNGYHR 408
            MY EHI LPT +  K   VM Q DRLGF+GA GS DVTHI W  CPYNQARSYTGKEG+PT+AY+VTVDHT R +AVT GFTGSTNDK+I+ +D AV KIR D  Y+EK F VY  DGT   LKGCYLLVDNGYH+
Sbjct:  201 MYAEHIFLPTGDYQKK--VMTQYDRLGFSGATGSTDVTHIPWGMCPYNQARSYTGKEGYPTVAYQVTVDHTKRVLAVTPGFTGSTNDKSIIRYDTAVTKIREDPIYSEKEFTVYEADGTPYQLKGCYLLVDNGYHK 334

[Close]

BLAST of mRNA_E_fasciculatus_S2_contig8835.16929.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5B7_9PHAE)

HSP 1 Score: 185 bits (469), Expect = 5.040e-55
Identity = 92/136 (67.65%), Postives = 102/136 (75.00%), Query Frame = 1

Query:    1 MYDEHIHLPTEESGKLDHVMKQNDRLGFTGAVGSMDVTHIAWSRCPYNQARSYTGKEGFPTIAYEVTVDHTGRAMAVTEGFTGSTNDKTIVCWDAAVEKIRTDKQYTEKTFDVYNEDGTTTTLKGCYLLVDNGYHR 408
            MYDEHI+LP E+SG+LDHVM++ DRLGF+G +GSMDVT                             V+H GRA+AVTEGFTGSTNDKTIVCWDAAVEKIRTDKQYTEK FDVYNEDGTTTTLKGCYLLVDNGYH+
Sbjct:   47 MYDEHIYLPPEQSGELDHVMERYDRLGFSGTMGSMDVT-----------------------------VNHAGRAIAVTEGFTGSTNDKTIVCWDAAVEKIRTDKQYTEKAFDVYNEDGTTTTLKGCYLLVDNGYHK 153

The following BLAST results are available for this feature:

BLAST of mRNA_E_fasciculatus_S2_contig8835.16929.1 vs.

BLAST of mRNA_E_fasciculatus_S2_contig8835.16929.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
Uncharacterized	3.980e-88	90.44	protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ...	[more]
DDE	4.090e-82	77.44	Tnp4 domain-containing protein n=1 Tax=Ectocarpus ...	[more]
Transposon	4.700e-82	85.29	protein, putative, Pong sub-class n=1 Tax=Ectocarp...	[more]
Uncharacterized	1.920e-80	83.09	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]
Uncharacterized	9.950e-70	78.68	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]
Uncharacterized	1.010e-69	79.84	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]
Uncharacterized	1.520e-68	73.53	protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]
DDE	8.890e-68	77.21	Tnp4 domain-containing protein n=1 Tax=Ectocarpus ...	[more]
Uncharacterized	6.060e-57	69.12	protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]
Uncharacterized	5.040e-55	67.65	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E_fasciculatus_S2_contig8835	contig	E_fasciculatus_S2_contig8835:4214..4630 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO2	2022-07-07

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	1
Start	1
Seed ortholog score	266.2
Seed ortholog evalue	8.8e-69
Seed eggNOG ortholog	2880.D7FSK2
Model size	417
Hectar predicted targeting category	other localisation
Exons	1
EggNOG free text desc.	Plant transposon protein
EggNOG OGs	2E2RF@1,2S9YA@2759
Cds size	417
COG Functional cat.	S
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696842538.2274292-CDS-E_fasciculatus_S2_contig8835:4213..4630	1696842538.2274292-CDS-E_fasciculatus_S2_contig8835:4213..4630	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig8835 4214..4630 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E_fasciculatus_S2_contig8835.16929.1	prot_E_fasciculatus_S2_contig8835.16929.1	Ectocarpus fasciculatus EfasUO2	polypeptide	E_fasciculatus_S2_contig8835 4214..4630 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E_fasciculatus_S2_contig8835:4214..4630+
coding sequence from alignment at E_fasciculatus_S2_contig8835:4214..4630+

protein sequence of mRNA_E_fasciculatus_S2_contig8835.16929.1

>prot_E_fasciculatus_S2_contig8835.16929.1 ID=prot_E_fasciculatus_S2_contig8835.16929.1|Name=mRNA_E_fasciculatus_S2_contig8835.16929.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=139bp
MYDEHIHLPTEESGKLDHVMKQNDRLGFTGAVGSMDVTHIAWSRCPYNQA
RSYTGKEGFPTIAYEVTVDHTGRAMAVTEGFTGSTNDKTIVCWDAAVEKI
RTDKQYTEKTFDVYNEDGTTTTLKGCYLLVDNGYHRCM*

mRNA from alignment at E_fasciculatus_S2_contig8835:4214..4630+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E_fasciculatus_S2_contig8835.16929.1 ID=mRNA_E_fasciculatus_S2_contig8835.16929.1|Name=mRNA_E_fasciculatus_S2_contig8835.16929.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=417bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8835:4214..4630+ (Ectocarpus fasciculatus EfasUO2)
ATGTACGATGAACACATCCACCTCCCTACGGAAGAGAGCGGCAAGTTGGA
CCACGTCATGAAGCAGAACGATCGGCTTGGGTTTACGGGTGCGGTGGGTT
CTATGGACGTCACACATATCGCTTGGAGCAGGTGTCCCTACAACCAAGCC
CGTTCGTACACAGGCAAGGAGGGTTTTCCCACGATCGCGTACGAGGTCAC
GGTTGATCACACCGGCCGGGCAATGGCCGTAACGGAGGGTTTCACCGGCT
CGACGAACGACAAGACCATCGTCTGCTGGGATGCCGCGGTGGAGAAGATT
CGGACGGACAAGCAGTACACGGAGAAGACGTTCGACGTGTACAATGAGGA
CGGCACGACGACGACGCTCAAGGGGTGCTACTTGCTCGTCGACAACGGTT
ACCACAGGTGCATGTAA

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8835:4214..4630+

>mRNA_E_fasciculatus_S2_contig8835.16929.1 ID=mRNA_E_fasciculatus_S2_contig8835.16929.1|Name=mRNA_E_fasciculatus_S2_contig8835.16929.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=417bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8835:4214..4630+ (Ectocarpus fasciculatus EfasUO2)
ATGTACGATGAACACATCCACCTCCCTACGGAAGAGAGCGGCAAGTTGGA
CCACGTCATGAAGCAGAACGATCGGCTTGGGTTTACGGGTGCGGTGGGTT
CTATGGACGTCACACATATCGCTTGGAGCAGGTGTCCCTACAACCAAGCC
CGTTCGTACACAGGCAAGGAGGGTTTTCCCACGATCGCGTACGAGGTCAC
GGTTGATCACACCGGCCGGGCAATGGCCGTAACGGAGGGTTTCACCGGCT
CGACGAACGACAAGACCATCGTCTGCTGGGATGCCGCGGTGGAGAAGATT
CGGACGGACAAGCAGTACACGGAGAAGACGTTCGACGTGTACAATGAGGA
CGGCACGACGACGACGCTCAAGGGGTGCTACTTGCTCGTCGACAACGGTT
ACCACAGGTGCATGTAA