mRNA_E_fasciculatus_S2_contig8833.16928.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8833.16928.1
Unique NamemRNA_E_fasciculatus_S2_contig8833.16928.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8833.16928.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX54_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 2.330e-7
Identity = 30/78 (38.46%), Postives = 43/78 (55.13%), Query Frame = 1 
Query:   76 NIADCGYDGGDCCSCDC--------TDVRATASGDYYCDYSGYDCLDVDSACYGE--PQCSARG---DLVSNGYCNAG 270
            N A+CGYDGGDCC CDC        +    ++S ++ C  +GY C+D  S C+ +  P C +RG   + + NG C  G
Sbjct:  154 NNAECGYDGGDCCECDCGTFGTSLDSSSSTSSSANFTCGANGYVCVDPASECFEDLYPDCVSRGGTLEWIGNGACYWG 231
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BLAST of mRNA_E_fasciculatus_S2_contig8833.16928.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB04_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 3.080e-6
Identity = 24/51 (47.06%), Postives = 34/51 (66.67%), Query Frame = 1 
Query:   70 DNNIADCGYDGGDCCSCDCTDVRATASGDYYC--DYSGYDCLDVDSACYGE 216
            +NN  +CGYDGGDCCSC C   ++    DY C  +Y  +DC D +++C+GE
Sbjct:  181 NNNKEECGYDGGDCCSCTC---QSPYDDDYLCSSEYGSFDCQDPNASCFGE 228
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8833.16928.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXR2_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 3.180e-6
Identity = 24/51 (47.06%), Postives = 34/51 (66.67%), Query Frame = 1 
Query:   70 DNNIADCGYDGGDCCSCDCTDVRATASGDYYC--DYSGYDCLDVDSACYGE 216
            +NN  +CGYDGGDCCSC C   ++    DY C  +Y  +DC D +++C+GE
Sbjct:  543 NNNKEECGYDGGDCCSCTC---QSPYDDDYLCSSEYGSFDCQDPNASCFGE 590
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8833.16928.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F4_ECTSI)

HSP 1 Score: 53.1 bits (126), Expect = 5.700e-6
Identity = 24/51 (47.06%), Postives = 33/51 (64.71%), Query Frame = 1 
Query:   70 DNNIADCGYDGGDCCSCDCTDVRATASGDYYC--DYSGYDCLDVDSACYGE 216
            +NN  +CGYDGGDCCSC C    +    DY C  +Y  +DC D +++C+GE
Sbjct:  281 NNNKEECGYDGGDCCSCTC---ESPYDDDYSCSSEYGSFDCKDPNASCFGE 328
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8833.16928.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVP4_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 7.830e-6
Identity = 25/48 (52.08%), Postives = 27/48 (56.25%), Query Frame = 1 
Query:   76 NIADCGYDGGDCCSCDCTDVRATASGDYYCDYSGYDCLDVDSACYGEP 219
            N ADC +DGGDCC CDC D        Y C   GYDCLD  S+C   P
Sbjct:  425 NHADCEWDGGDCCECDCVDAT------YDCGVVGYDCLDPTSSCSDSP 466
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BLAST of mRNA_E_fasciculatus_S2_contig8833.16928.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G300_ECTSI)

HSP 1 Score: 50.8 bits (120), Expect = 9.330e-6
Identity = 31/73 (42.47%), Postives = 38/73 (52.05%), Query Frame = 1 
Query:   58 RSFADNNIADCGYDGGDCCSCDCTDVRATASGDYYCDYSGYDCL----DVDSACYGEPQCSARGDLVSNGYCN 264
            R  A+NN   CG+DGGDCCSC CTD        Y C  + +DCL      DSA   E  C    D  S+G+C+
Sbjct:   40 RCDAENNSPSCGFDGGDCCSCTCTDTVL-----YSCADNEFDCLYPLCGDDSAASEEEACVE--DWQSDGFCD 105
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8833.16928.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM92_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 1.090e-5
Identity = 24/51 (47.06%), Postives = 33/51 (64.71%), Query Frame = 1 
Query:   70 DNNIADCGYDGGDCCSCDCTDVRATASGDYYC--DYSGYDCLDVDSACYGE 216
            +NN  +CGYDGGDCCSC C   ++    DY C  +Y  +DC D  ++C+GE
Sbjct:  501 NNNKEECGYDGGDCCSCTC---QSAYDDDYSCSSEYGYFDCQDPSASCFGE 548
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8833.16928.1 vs.
Match: Similar (to Pappalysin-2 (Pregnancy-associated plasma protein-A2) (PAPP-A2) (Pregnancy-associated plasma protein-E1) (PAPP-E) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI88_ECTSI)

HSP 1 Score: 52.0 bits (123), Expect = 1.220e-5
Identity = 24/51 (47.06%), Postives = 33/51 (64.71%), Query Frame = 1 
Query:   70 DNNIADCGYDGGDCCSCDCTDVRATASGDYYC--DYSGYDCLDVDSACYGE 216
            +NN  +CGYDGGDCCSC C   ++    DY C  +Y  +DC D  ++C+GE
Sbjct:   40 NNNKEECGYDGGDCCSCTC---QSAYDDDYSCSSEYGYFDCQDPTASCFGE 87
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8833.16928.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9A3_ECTSI)

HSP 1 Score: 49.3 bits (116), Expect = 2.790e-5
Identity = 27/54 (50.00%), Postives = 32/54 (59.26%), Query Frame = 1 
Query:   67 ADNNIADCGYDGGDCCSCDCTDVRATASGD---YYCDYSGYDCLDVDSACYGEP 219
            A NN+ +CG+DGGDCC CDC  + A AS D   Y C    + C D  SACY  P
Sbjct:   23 ATNNLEECGFDGGDCCECDCV-IPADASEDQLAYSC--VQFSCDDTSSACYVVP 73
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8833.16928.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K995_9PHAE)

HSP 1 Score: 49.7 bits (117), Expect = 3.490e-5
Identity = 28/54 (51.85%), Postives = 32/54 (59.26%), Query Frame = 1 
Query:   67 ADNNIADCGYDGGDCCSCDCTDVRATASGD---YYCDYSGYDCLDVDSACYGEP 219
            A NN+ +CG+DGGDCC CDC  V A AS D   Y C    + C D  SACY  P
Sbjct:   59 ATNNLEECGFDGGDCCECDCV-VPADASEDQLAYSC--VQFSCDDTSSACYVVP 109
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8833.16928.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
Uncharacterized2.330e-738.46protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized3.080e-647.06protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized3.180e-647.06protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized5.700e-647.06protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized7.830e-652.08protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized9.330e-642.47protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.090e-547.06protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Similar1.220e-547.06to Pappalysin-2 (Pregnancy-associated plasma prote... [more]
Uncharacterized2.790e-550.00protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized3.490e-551.85protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8833contigE_fasciculatus_S2_contig8833:1485..5953 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size297
Hectar predicted targeting categoryother localisation
Exons3
Cds size297
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842538.1746118-CDS-E_fasciculatus_S2_contig8833:1484..16341696842538.1746118-CDS-E_fasciculatus_S2_contig8833:1484..1634Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8833 1485..1634 +
1696842538.1853652-CDS-E_fasciculatus_S2_contig8833:3552..36131696842538.1853652-CDS-E_fasciculatus_S2_contig8833:3552..3613Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8833 3553..3613 +
1696842538.19526-CDS-E_fasciculatus_S2_contig8833:5867..59531696842538.19526-CDS-E_fasciculatus_S2_contig8833:5867..5953Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8833 5868..5953 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8833.16928.1prot_E_fasciculatus_S2_contig8833.16928.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8833 1485..5953 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8833.16928.1

>prot_E_fasciculatus_S2_contig8833.16928.1 ID=prot_E_fasciculatus_S2_contig8833.16928.1|Name=mRNA_E_fasciculatus_S2_contig8833.16928.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=99bp
MGLYLIPTRPPCFLCCRLARSFADNNIADCGYDGGDCCSCDCTDVRATAS
GDYYCDYSGYDCLDVDSACYGEPQCSARGDLVSNGYCNAGELHDHLLR*
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mRNA from alignment at E_fasciculatus_S2_contig8833:1485..5953+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8833.16928.1 ID=mRNA_E_fasciculatus_S2_contig8833.16928.1|Name=mRNA_E_fasciculatus_S2_contig8833.16928.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4469bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8833:1485..5953+ (Ectocarpus fasciculatus EfasUO2)
ATGGGTTTGTACCTCATCCCGACGCGACCGCCCTGTTTTCTCTGTTGCCG
GCTCGCTCGCTCGTTCGCAGACAACAACATCGCGGATTGTGGATACGATG
GGGGCGATTGCTGCTCGTGCGACTGCACCGATGTGAGGGCAACCGCGAGC
GTCAATATCGTTGGTAGACGTGACCTACTGCTGTATGTTGAGCTTTCCTT
CGGTGGTCGATGTCGATGGCACAGCAGATGTATTCACGGTACTTGTTGTA
CGATATGTCACACACACACTGCCAATTCGCAGCCTGCAGACAGTATTGTT
TTTCCAGCGTGGCAAAGTTTGTCTTCAACCCGTGTCTTCTTGCTCCTGGG
TCGGCTGCTATCCAGGATACTTTTACCTACTGCGGCATTTACGGCTTCGA
GTGCCTCGACGTGGACTCGGCGTGCTACGGTGGGTACTGCTCCACAGCAG
AGGCCTCAACGGTCGGAGTGATCAGTGGGCCATCCTTTGTCCCACAATAC
TTGTAGGCATTGGCGAGTCGGGAATGCTTCTGCTAGTACCCTCCGCAGGG
ACACCGGTACCTCTCGACGGTCATTCGCGGTCGCTGGTTGTTAGTAGAGG
CGTTGATGGACACGGTCCTCGAAACACGACTTTCACACCATTCTCTCTTG
GTTTCGTGTGATTTGCTTGTTGGCTGGCCTGTACATATTTCCCTGGTCCG
CACGGGTCTCTGTCTCTGTCTCTCTCCTTCTGTCTCTTCCTTCTGAGTAC
CGCCAGGCACCTCTTTACAAGTCGTTCTTCCGAGCAGTTCAGTACATCTC
AAGGATTGTCTGATGGCATGGACGTACGTTTTTCACCCTTGAAGGACGAG
AGTGGTCAAGCACTTGCCTCTGGCAGGATTTGTGAGATACTTGCAGCTGC
TCGATCACCCACACCGTTCGCTAAGCCTAATATCCCCCTGATCGCACGCC
ACTGACGCTGGCAGGCGAACCCCAGTGCAGCGCCAGGGGTGACTTGATAT
CTAACGGCAAATGTGACGAAGGTGAGCTACACGAATATTTGCTACGGTAG
TTTGGTGACCCCTGGCGACGGCGCACGTGGTGACAACCCGCATATGTAGG
CCGTACCCTAGTGTGCAGTGGGCATGCGAGCTAAACATGCCCCATCTAAG
GCCGCAACATCGCTGACGTATGGTACGTGGACATGGCTATATCGTGGATA
TTCTCGTGACGATTGTACTGTGAGCTTTGCGCGGCCCTACTCTCTGTAGC
GATATTGTACCTACCCGGAGGGTGCCGTGGGTGTGCAGTACAGGCTGATC
ATGTGTGCGAGGCGCCAATGTATCGGTTTTGATGTGACGGGCCTGGCCCC
GTTCTTGCGCTTGGCGTTCACTTGGTCCTCTCCTCGATGAGTGTGTGTCG
TGTCTTTGGTTGGGCGAGGGTACTCGCCCGCTTGGGTCGAACAGACATGT
TCGTTTCCAGTACGCTTTTTGGTCACCCTGGCGCCGACTGTGCTTGGCGC
ACGGGCTTCGGAGCGATGCCATCACACACCTGGTAGTAGTGACAGTATTG
AGACGGGGTGTGCGATGGGTAGTGGAAGCGTGGGAAGACAACGATCGGCG
GCATGTGCATTGAGTTCGGCCAACCCTTACAGTCACCGCCTGTGTGGACA
GCAAGATGACGATGGTCGGTGGGCCGTGTGTTTGGCTGAGGGCCCACCGA
CCTGACCACATGGCACTCGCAGGGATATGACCATGAATGATATCACGATG
CGAATGCCGTGTTCGCTGTTTTCTTGGCTTGCTCGCAGAGAACAACAACG
CGGAATGCCAATACGATGGGGGCGATTGTTGCTCCTGCGACTGCACCGAT
GTGAGGGCAATCGCGAGTTTCTATTTTGTTGGTGGAAGTGGCCTACCGTG
TGCTGAGAGTTCAGTCCATGAAGAATCGGTGATTTGGTGATGTTCGTCGC
GCCATATACAAAAGGCGCGCACCACAGCGCCATAGTCTATGCTTACTATC
CGAAACTGTACGCCTGTGTTCAGCCCGATGATATCGCCTGCTCTGGTGTT
CCGTTCGGCTGCACCCAGGGCGACTATTACTGCGACTACAGCGGCTACGA
TTGCCTCGACGTGGACTCGGCGTGTTACGGTGGGTGTTGGTTCAGAGAGG
CCTCAACGTTCGTAGTGATCCTCACAAGCACATTTGGGTTACTCTATAGA
CTATCACCCCCCAGGGAGTTCCACGCTTTGACCAACGGTGAATTGCTCGG
GAATGCGTACCCCTGTCTGGAACGAATGCTCCTTCACAAGCAGTAGTCAT
TCATGGTGGCTGGTTTGTTGTGGAGACGCGGCATGCGAACCACTATACTT
TAGGGTAGTACCCCTTGTTGAGGTGTGGTTTCGTTCTTGTTGGGCTGGCC
TGAACCTCATTGGTCGGCAGGGTCTCTCTCGCTTCGTCTCTTGCTTACGT
ACCGTCAGACTATTGGAGTGGCCCACCCAAGGAGTTCAGTGAAACCATGG
GACAGCTCTCCTGCACGTACGAGATGGGTTTGACCAGTGTCGAGAGGGGA
TGGCCTCTATAGTTGCTGCCGTAGGCAGTTTGTGTGATATCTCCCGCTGT
ACGATGCTCTTCTGTTCGGTAAGCCCAGTATCACCCCCGATCGCACGTCG
CTGGCGCTTGCAGGCGAACCCCAGTGCAGCGTCGCGCCCTACCAAATGTC
CGACGGGTACTGCCAGCAAAGTGAGTTCTTCACCGGCAACATTGCTACAG
TAGGGGGTGGGACCCCTGGCTATGGTGTTGTGTCACGTTTTGGTGCCGGG
TTCTTTGGGTCTGTTGACCCGATCGCCACCGGCCATAGCCGTGCCATGCC
CCAGAGTGCACACTGACGTCGTGAGTGGCATGGCGCGGCGGACATAGCAC
TGTGAGCTCTGTGCGAGCTACTGTGGTTTCACAGCGTCACCTACGTTCCC
CCGACCTGAAGGAAAGTCGCCGAGACGCCCTACCTGTCACGTGTATGCAT
ATGTACACCGCCAGAATATTTCGCAATATACGACGGCGGGGCGGCACACG
TGCTGCGCTCTGCGTATACTGGTTCTGCGCTGTGTGGGTGCGCATAACGA
TTTTGGTTGACAAACGTTGCTGCTGTACCGCATGGACCCCGAACAGATTA
TAGTGTCGACATCGTCTGGCATTGAAGCATCTAGACTAGCTGACGCCCGT
CCCATTGTTCGTCCGTCGCTCCAAACATGCGTGACGTCTGCCTTGCGGGG
CGATCCCCTCACACACCTGGTAGTAGTATAGTGGCAGTGGGATGGCGTCC
ACCGTACGATGGGCCGGGGGTGTCTACGGCAACAGCAAGTGCCCATCTTG
AAACACACTTGACCTCGGTGAACCGGATGTTTGCTTTCAGACCGAGCTGA
CCATGCGGCATGCGGAGGGGCATGGGTTTGTACCTCATCCCGACGCGACC
GCCCTGTTTTCTCTGTTGCCGGCTCGCTCGCTCGTTCGCAGACAACAACA
TCGCGGATTGTGGATACGATGGGGGCGATTGCTGCTCGTGCGACTGCACC
GATGTGAGGGCAACCGCGAGCGTCAATATCGTTGGTAGACGTGACCTACT
GCTGTATGTTGAGCTTTCCTTCGGTGGTCGATGTCGATGGCACAGCAGAT
GTATTCACGGTACTTGTTGTACGATATGTCACACACACACTGCAACTTCG
CAGCCTGCAGACAGTATTGTTTTCCCAGCGTGGCAAAGTTTGTCTTCAAC
CCGTATCTTGTTGCTCCTGGGTCGGCTGCTATCCAGGGTGATTATTCCTG
CGGCTTTGCCGGCTTCGAGTGCCTCGACGTGGACTCGGCGTGCTACGGTG
GGTACTACTGCTCCACAGAGGCCTCAACGGTCGGAGTGATCAGTGGGCCA
TCCTTTGTCGCACAATACTTGTAGGCATTGGCGAGTCGGGAATGCTTCTG
CTGGTACTCTCCGCAAGGACACCGGTACCTCTCGACGGTCATTTGCGGTC
GCTGGTTGTTAGTAGAGGCGTTGATGGGCACGGTCCTCGAAACACGACTT
TCACACCATTCTCTCTTGGCTTCGTGTGATTTGCTTGTTGGCTGGCCTGT
ACATATTTCCCTGGTCCGCACGGGTCTCTGTCTCTGTCTCTCTCCTTCTG
TCTCTTCCTTCTGAGTACCGCCAGGCACCCTTTTACAAGTCGTTCTTCCG
AGCAGTTCAGTACATCTCAAGGATTGTCTGATGGCATGGACGTACGTTTT
TTCACCCTTGAAGAACGAGAGTGGTCAAGCACTTGCCTCTGGCAGGATTT
GTGAGATACTTCCAGCTGCTCGATCACCCACACCGTTCGCTAAGCCTAAT
ATCCCCCTGATCGCACGCCACTGACGCTGGCAGGCGAACCCCAGTGCAGC
GCCAGGGGTGACTTGGTATCTAACGGCTATTGTAACGCAGGTGAGCTACA
CGACCATTTGCTACGGTAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8833:1485..5953+

>mRNA_E_fasciculatus_S2_contig8833.16928.1 ID=mRNA_E_fasciculatus_S2_contig8833.16928.1|Name=mRNA_E_fasciculatus_S2_contig8833.16928.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=297bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8833:1485..5953+ (Ectocarpus fasciculatus EfasUO2)
ATGGGTTTGTACCTCATCCCGACGCGACCGCCCTGTTTTCTCTGTTGCCG
GCTCGCTCGCTCGTTCGCAGACAACAACATCGCGGATTGTGGATACGATG
GGGGCGATTGCTGCTCGTGCGACTGCACCGATGTGAGGGCAACCGCGAGC
GGCGACTATTACTGCGACTACAGCGGCTACGATTGCCTCGACGTGGACTC
GGCGTGTTACGGCGAACCCCAGTGCAGCGCCAGGGGTGACTTGGTATCTA
ACGGCTATTGTAACGCAGGTGAGCTACACGACCATTTGCTACGGTAG
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