prot_E_fasciculatus_S2_contig8825.16921.1 (polypeptide) Ectocarpus fasciculatus EfasUO2

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_E_fasciculatus_S2_contig8825.16921.1
Unique Name	prot_E_fasciculatus_S2_contig8825.16921.1
Type	polypeptide
Organism	Ectocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Sequence length	488

Homology

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BLAST of mRNA_E_fasciculatus_S2_contig8825.16921.1 vs. uniprot
Match: D8LGT1_ECTSI (RRM domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGT1_ECTSI)

HSP 1 Score: 426 bits (1096), Expect = 3.460e-142
Identity = 228/240 (95.00%), Postives = 232/240 (96.67%), Query Frame = 0

Query:  208 RSRNPFIVFVGQLAFSTTAESIEEHFRTRGGIEGNISVRLLTRKGTNPPRSKGMAFLQVDDAESAYQCLGLHHSRLDGRLLNVERTSGGGKEKKGERIQEKRGEQKEFMKSVVQRVLGEFITAGRLGKTELDEAAQGVLEKMEAKVMERAVKDYCDKPDRLELHNPSAWFTHHAHELCFRSDPETLEAGARDWLNDEKIKAGGRNRDKEKAARKARGERVNGGGXXXXXXXX---GWVSR 444
            RSRNPFIVFVGQLAFSTTAE +EEHFRTRGGIEGNISVRLLTRKGTNPP+S+GMAFLQVDDAESAYQCL LHHSRLDGRLLNVERTSGGGKE+KGERIQEKRGEQKEFMKSVVQRVLGEFITAGRLGKTELDEAAQGVLEKMEAKVMERAVKDYCDKPDRLEL NPSAWFTHHAHELCFRSDPETLEAGARDWLNDEKIKAGGRNRDKEKAARKARGERVNG  XXXXXXXX   GWVSR
Sbjct:  175 RSRNPFIVFVGQLAFSTTAERVEEHFRTRGGIEGNISVRLLTRKGTNPPKSRGMAFLQVDDAESAYQCLSLHHSRLDGRLLNVERTSGGGKERKGERIQEKRGEQKEFMKSVVQRVLGEFITAGRLGKTELDEAAQGVLEKMEAKVMERAVKDYCDKPDRLELQNPSAWFTHHAHELCFRSDPETLEAGARDWLNDEKIKAGGRNRDKEKAARKARGERVNGXXXXXXXXXXXXXGWVSR 414

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BLAST of mRNA_E_fasciculatus_S2_contig8825.16921.1 vs. uniprot
Match: A0A6H5KAW2_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAW2_9PHAE)

HSP 1 Score: 426 bits (1096), Expect = 1.520e-141
Identity = 219/236 (92.80%), Postives = 225/236 (95.34%), Query Frame = 0

Query:  209 SRNPFIVFVGQLAFSTTAESIEEHFRTRGGIEGNISVRLLTRKGTNPPRSKGMAFLQVDDAESAYQCLGLHHSRLDGRLLNVERTSGGGKEKKGERIQEKRGEQKEFMKSVVQRVLGEFITAGRLGKTELDEAAQGVLEKMEAKVMERAVKDYCDKPDRLELHNPSAWFTHHAHELCFRSDPETLEAGARDWLNDEKIKAGGRNRDKEKAARKARGERVNGGGXXXXXXXXGWVSR 444
            SRNPFIVFVGQLAFSTTAE +EEHFRTRGGIEGNISVRLLTRKGTNPP+S+GMAFLQVDDAESAYQCL LHHSRLDGRLLNVERTSGGGKEKKGERIQEKRG+QKEFMKSVVQRVLGEFITAGRLGKTELDEAAQGVLEKMEAKVMERAVKDYCDKPDRLELHNPSAWFTHHAHELCFRSDPETLEAGARDWL+DEKIKAGGR+RDKEKAARKARGERVN GG        GWVSR
Sbjct:  191 SRNPFIVFVGQLAFSTTAERVEEHFRTRGGIEGNISVRLLTRKGTNPPQSRGMAFLQVDDAESAYQCLSLHHSRLDGRLLNVERTSGGGKEKKGERIQEKRGQQKEFMKSVVQRVLGEFITAGRLGKTELDEAAQGVLEKMEAKVMERAVKDYCDKPDRLELHNPSAWFTHHAHELCFRSDPETLEAGARDWLDDEKIKAGGRSRDKEKAARKARGERVNVGGGGRGSGS-GWVSR 425

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BLAST of mRNA_E_fasciculatus_S2_contig8825.16921.1 vs. uniprot
Match: A0A836CEL8_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEL8_9STRA)

HSP 1 Score: 183 bits (465), Expect = 1.490e-47
Identity = 97/175 (55.43%), Postives = 121/175 (69.14%), Query Frame = 0

Query:  212 PFIVFVGQLAFSTTAESIEEHFRTRGGIEGNISVRLLTRKGTNPPRSKGMAFLQVDDAESAYQCLGLHHSRLDGRLLNVERTSGGGKEKKGERIQEKRGEQKEFMKSVVQRVLGEFITAGRLGKTELDEAAQGVLEKMEAKVMERAVKDYCDKPDRLELHNPSAWFTHHAHELCF 386
            P +VFVGQL+F TT   +EEHFR RGG+EG + VRLLT   TN  RS+GMAF++ +  E+ YQCL LHH+RLDGR+LNVERTSGG  +   ++I   R EQK  MK  V R++GEFI  G L + ELD  A  VLEK E KV+E+A+ DYC KPD+  L N SA+F H  H + F
Sbjct:  166 PLVVFVGQLSFKTTEAEVEEHFRKRGGVEGELKVRLLTNP-TNG-RSRGMAFVETESPETLYQCLTLHHTRLDGRILNVERTSGGKGDAHKQKISSLREEQKAHMKDTVARIMGEFIAKGLLKEGELDVDAVRVLEKFEGKVVEKALSDYCVKPDKATLRNKSAYFVHITHGIAF 338

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BLAST of mRNA_E_fasciculatus_S2_contig8825.16921.1 vs. uniprot
Match: A0A7S1TQR3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TQR3_9STRA)

HSP 1 Score: 128 bits (322), Expect = 1.510e-30
Identity = 74/176 (42.05%), Postives = 114/176 (64.77%), Query Frame = 0

Query:  210 RNPFIVFVGQLAFSTTAESIEEHFRTRGGIEGNISVRLLTRKGTNPPRSKGMAFLQVDDAESAYQCLGLHHSRLDGRLLNVERTSGGGKEKKGER---IQEKRGEQKEFMKSVVQRVLGEFITAGRLGKTELDEAAQGVLEKMEAKVMERAVKDYCDKP---DRLELHNPSAWFTH 379
            RNP IVFVGQL++ TTAE +++HF    G+EGNI+VRL T   T   RS+GMAF+++D  E+ ++CL LHH+ LDGR +NVE+++G G    G R   ++++R  Q+E +   V R++ E + A +L + E+DE    +L + E +++E A+  +C +    DR  + NPSA  TH
Sbjct:   17 RNPCIVFVGQLSYRTTAEQLKKHFAA-AGVEGNIAVRLRTDPKTK--RSRGMAFVELDTPEALHECLKLHHTMLDGRNINVEKSAGRGGRATGARATKLKDQRAAQQETIDGAVARMVDERVEAKKLARGEIDERCIALLSRFEGRIVELALDAFCMRGAPGDRGGIANPSAMVTH 189

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BLAST of mRNA_E_fasciculatus_S2_contig8825.16921.1 vs. uniprot
Match: A0A8J2WQQ0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WQQ0_9STRA)

HSP 1 Score: 132 bits (331), Expect = 2.990e-30
Identity = 68/169 (40.24%), Postives = 109/169 (64.50%), Query Frame = 0

Query:  210 RNPFIVFVGQLAFSTTAESIEEHFRTRGGIEGNISVRLLTRKGTNPPRSKGMAFLQVDDAESAYQCLGLHHSRLDGRLLNVERTSGGGKEKKGERIQEKRGEQKEFMKSVVQRVLGEFITAGRLGKTELDEAAQGVLEKMEAKVMERAVKDYCDKPDRLELHNPSAWFT 378
            R P + FVGQL +STT E IE+ FR++G +EG + VRLLT   T   RS+GMAF++ + AE+ Y C+  HH+ LDGR +NVE+++GGGK  K ++++  R  Q + ++  V RV+GEF++ GR+ +   DE  + +L++   +V   A++++     R    NP+A+ T
Sbjct:  172 RAPLVAFVGQLHYSTTKERIEQFFRSQG-VEGTLKVRLLTDAKTK--RSRGMAFVECETAEALYACVACHHAHLDGRRVNVEKSAGGGKATKKDKLKRHRERQDQKIEESVDRVIGEFVSQGRIEERVFDEGVRKLLQRRSGRVANMALEEFASLEGRESFDNPAAYLT 337

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BLAST of mRNA_E_fasciculatus_S2_contig8825.16921.1 vs. uniprot
Match: B8C2M8_THAPS (RRM domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C2M8_THAPS)

HSP 1 Score: 122 bits (305), Expect = 2.190e-26
Identity = 69/185 (37.30%), Postives = 108/185 (58.38%), Query Frame = 0

Query:  212 PFIVFVGQLAFSTTAESIEEHFRTRGG----IEGNISVRLLTRKGTNPPRSKGMAFLQVDDAESAYQCLGLHHSRLDGRLLNVERTSGGGKEKKGERIQEKRGEQKEFMKSVVQRVLGEFITAGRLGKTELDEAAQGVLEKMEAKVMERAVKDYCDKP-------------DRLELHNPSAWFTH 379
            P+IVF+GQL++STT + I +HF    G     + ++ +RLLT   T   +S+GMAF+++D  E+ Y+CL +H + LDGR +NVERT+GGG   K  +I   R EQ  ++   +  +L E++  G + + ELDE    + ++  A V+ERA+ +Y D+              +  EL NPSA+ TH
Sbjct:  193 PYIVFIGQLSYSTTTDMIYDHFHNTLGPDVITKESVKIRLLTDSKTK--KSRGMAFVELDSPEAMYECLRMHLTHLDGRRINVERTAGGGAALKKSKITSYREEQTTYISQTMDHILSEYMKKGDIDEDELDEGVIALCKRHSATVVERALNEYVDEKKVRKERKETLGEKEEEELRNPSAFLTH 375

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BLAST of mRNA_E_fasciculatus_S2_contig8825.16921.1 vs. uniprot
Match: A0A7S3XJ31_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XJ31_HETAK)

HSP 1 Score: 117 bits (293), Expect = 2.520e-25
Identity = 71/165 (43.03%), Postives = 105/165 (63.64%), Query Frame = 0

Query:  212 PFIVFVGQLAFSTTAESIEEHFRTRGGIEGNISVRLLTRKGTNPPRSKGMAFLQVDDAESAYQCLGLHHSRLDGRLLNVERTSGG-GKEKKGERIQEKRGEQKEFMKSVVQRVLGEFITAGRLGKTELDEAAQGVLEKMEAKVMERAVKDYCDKPDRLELHNPSA 375
            P IVFVGQL F TT++ IE+HFR    I G I VRLLT K T  P  KGMAF++V +    Y+CL LHHS L+ R +NVE++ GG   +K+ E+I E + +Q++ +++ V+R+L EF   G + +TE +E     L   E  ++E A+K Y D+ D+ ++ N +A
Sbjct:   71 PNIVFVGQLDFKTTSKQIEDHFRAHD-IHGFIKVRLLTDKVTKKP--KGMAFVEVSNPTEMYKCLKLHHSSLNRRRINVEKSCGGKNTDKRKEKINELKQKQRQAVETTVKRILKEFTDRGDISETEFNETLMERLVSYEGTIVEEALKKYVDE-DKEKVQNRTA 231

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BLAST of mRNA_E_fasciculatus_S2_contig8825.16921.1 vs. uniprot
Match: A0A7S4JM15_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JM15_9STRA)

HSP 1 Score: 118 bits (296), Expect = 4.440e-25
Identity = 66/180 (36.67%), Postives = 112/180 (62.22%), Query Frame = 0

Query:  208 RSRNPFIVFVGQLAFSTTAESIEEHFRTRGG------IEGNISVRLLTRKGTNPPRSKGMAFLQVDDAESAYQCLGLHHSRLDGRLLNVERTSGGGKE---KKGERIQEKRGEQKEFMKSVVQRVLGEFITAGRLGKTELDEAAQGVLEKMEAKVMERAVKDYCDKPDRLELHNPSAWFT 378
            +  +P+++F+GQL++ TT E +  HF+   G       E  + +RLLT   T   RS+G+AF++ +D E+ Y CL LHH+ LDGR +NVER++GG KE   +KG +I + R EQ+E+M   + +++ +F + G + + ELDE    ++++  A ++E A+ +Y ++     L NPSA+ T
Sbjct:  229 KKSSPYVLFIGQLSYHTTKEGLFRHFQRELGKDKKEITEETLRIRLLTDSKTG--RSRGLAFVETEDPETMYACLQLHHTTLDGRCINVERSAGGKKESETRKG-KITQYRKEQEEYMSGTIDKIIADFQSRGDISEGELDEGVVALMKRNSAALVETALAEYVEERGE-SLDNPSAYLT 404

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BLAST of mRNA_E_fasciculatus_S2_contig8825.16921.1 vs. uniprot
Match: A0A6V2LJ41_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2LJ41_9STRA)

HSP 1 Score: 114 bits (285), Expect = 9.070e-25
Identity = 64/176 (36.36%), Postives = 107/176 (60.80%), Query Frame = 0

Query:  210 RNPFIVFVGQLAFSTTAESIEEHFRTRGGIE----GNISVRLLTRKGTNPPRSKGMAFLQVDDAESAYQCLGLHHSRLDGRLLNVERTSGG--GKEKKGERIQEKRGEQKEFMKSVVQRVLGEFITAGRLGKTELDEAAQGVLEKMEAKVMERAVKDYCDKPDRLELHNPSAWFTH 379
            ++P IVF+GQL+++TT + I +HF+   G +      +S+RLLT    N  +S+GMAF++  D E  Y CL LHH+ LDGR +NVER++GG  G E +  +++  R EQ+E++   V ++L ++   G L ++ELD+    + ++    V+  A+ +Y +      + NPSA+ TH
Sbjct:   39 KDPCIVFIGQLSYTTTKDQIFQHFQNELGSDVVTPDTLSIRLLTDPTKNN-KSRGMAFIETTDPELMYNCLKLHHTHLDGRRINVERSAGGNKGSEARQNKLKRYRTEQEEYLSETVNKILEDYKAQGDLNESELDDGVIALCKRHSPHVVSAALSEYVEARGG-HMENPSAYLTH 212

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BLAST of mRNA_E_fasciculatus_S2_contig8825.16921.1 vs. uniprot
Match: A0A1Z5JMP2_FISSO (Nucleolar protein 6 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JMP2_FISSO)

HSP 1 Score: 107 bits (268), Expect = 2.420e-22
Identity = 62/175 (35.43%), Postives = 110/175 (62.86%), Query Frame = 0

Query:  212 PFIVFVGQLAFSTTAESIEEHFRTRGGIEG------NISVRLLTRKGTNPPRSKGMAFLQVDDAESAYQCLGLHHSRLDGRLLNVERTSGGGK--EKKGERIQEKRGEQKEFMKSVVQRVLGEFITAGRLGKTELDEAAQGVLEKMEAKVMERAVKDYCDKPDRLELHNPSAWFT 378
            P+I+F+GQL++ TT ES+ +HF+T    +G         +RLLT   T   +S+GMAF+++   E  + CL LH + L+GR +NVE+++GGGK  E++ E+++  R +Q+E+++S+V +++ E+   G +   ELDE    + ++    V++ A++ Y D   R E+ NPSA+ +
Sbjct:  116 PYILFIGQLSYDTTKESLLQHFQTELADDGFDVNEQTCQIRLLTDPKTK--KSRGMAFVELSTPELMHACLKLHKTMLEGRRINVEKSAGGGKHSEQRKEKLKTFRTQQEEYIESMVAKMIDEYKQKGEIQDGELDEGVIALCQRHSGAVVQAALERYVDSNGR-EMDNPSAYLS 287

The following BLAST results are available for this feature:

BLAST of mRNA_E_fasciculatus_S2_contig8825.16921.1 vs. uniprot

BLAST of mRNA_E_fasciculatus_S2_contig8825.16921.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LGT1_ECTSI	3.460e-142	95.00	RRM domain-containing protein (Fragment) n=1 Tax=E...	[more]
A0A6H5KAW2_9PHAE	1.520e-141	92.80	RRM domain-containing protein n=1 Tax=Ectocarpus s...	[more]
A0A836CEL8_9STRA	1.490e-47	55.43	RRM domain-containing protein n=1 Tax=Tribonema mi...	[more]
A0A7S1TQR3_9STRA	1.510e-30	42.05	Hypothetical protein (Fragment) n=1 Tax=Phaeomonas...	[more]
A0A8J2WQQ0_9STRA	2.990e-30	40.24	Hypothetical protein n=1 Tax=Pelagomonas calceolat...	[more]
B8C2M8_THAPS	2.190e-26	37.30	RRM domain-containing protein n=1 Tax=Thalassiosir...	[more]
A0A7S3XJ31_HETAK	2.520e-25	43.03	Hypothetical protein (Fragment) n=1 Tax=Heterosigm...	[more]
A0A7S4JM15_9STRA	4.440e-25	36.67	Hypothetical protein n=1 Tax=Odontella aurita TaxI...	[more]
A0A6V2LJ41_9STRA	9.070e-25	36.36	Hypothetical protein n=1 Tax=Ditylum brightwellii ...	[more]
A0A1Z5JMP2_FISSO	2.420e-22	35.43	Nucleolar protein 6 n=2 Tax=Fistulifera solaris Ta...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus EfasUO2
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 214..291 e-value: 7.2E-10 score: 48.8
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 215..288 e-value: 4.7E-7 score: 29.5
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 213..295 score: 11.708
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 149..308 e-value: 5.3E-18 score: 67.5
None	No IPR available	PANTHER	PTHR23236:SF51	EUKARYOTIC INITIATION FACTOR 4B	coord: 45..416
None	No IPR available	PANTHER	PTHR23236	EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H	coord: 45..416
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 201..298

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E_fasciculatus_S2_contig8825	contig	E_fasciculatus_S2_contig8825:1..2833 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus EfasUO2	2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90	2022-09-16
OGS1.0 of Ectocarpus fasciculatus EfasUO2	2022-07-07

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_E_fasciculatus_S2_contig8825.16921.1	mRNA_E_fasciculatus_S2_contig8825.16921.1	Ectocarpus fasciculatus EfasUO2	mRNA	E_fasciculatus_S2_contig8825 1..2833 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_E_fasciculatus_S2_contig8825.16921.1 ID=prot_E_fasciculatus_S2_contig8825.16921.1|Name=mRNA_E_fasciculatus_S2_contig8825.16921.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=488bp
MTQQPPTPAAGGGGGGGMNAKERRAARRKAEQQQQQLAGNHKPATAAAAA
APSSGDPDPKTTSNGGGSSAPPAPAAGATGGTSAKERRAARRAAERAAAG
EDAAAEAAAAAPTASDTAPTNAKERRAAKRAAAAAAGTTTAAAAAAAAAA
AGPTTAKERRLLRREEERKKREREGDGSAPPPSKRSKDAEAGGRRARPEG
GGGGGGGRSRNPFIVFVGQLAFSTTAESIEEHFRTRGGIEGNISVRLLTR
KGTNPPRSKGMAFLQVDDAESAYQCLGLHHSRLDGRLLNVERTSGGGKEK
KGERIQEKRGEQKEFMKSVVQRVLGEFITAGRLGKTELDEAAQGVLEKME
AKVMERAVKDYCDKPDRLELHNPSAWFTHHAHELCFRSDPETLEAGARDW
LNDEKIKAGGRNRDKEKAARKARGERVNGGGGGGRGSGSGWVSRGGGSRV
MGRGRGGRGGEGGRGGGDAGGGFDRGEEGAGGARVKTE

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR035979	RBD_domain_sf
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom