mRNA_E_fasciculatus_S2_contig8751.16852.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8751.16852.1
Unique NamemRNA_E_fasciculatus_S2_contig8751.16852.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8751.16852.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNI6_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 4.610e-12
Identity = 32/47 (68.09%), Postives = 40/47 (85.11%), Query Frame = 1 
Query:   49 AACLASALWPQTLKRLVFDSNMPVDTALWPASLQQISFGYGFDKPIV 189
            AA L SA+WPQ LKR+VF+S+M V+TA WPASLQQ+SFG GF++ IV
Sbjct:  127 AASLESAVWPQRLKRMVFESDMTVNTASWPASLQQLSFGCGFNQAIV 173
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BLAST of mRNA_E_fasciculatus_S2_contig8751.16852.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2L2_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 4.760e-9
Identity = 30/44 (68.18%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:   49 AACLASALWPQTLKRLVFDSNMPVDTALWPASLQQISFGYGFDK 180
            AA LAS LW Q LKRLV + + PV TA WPASLQQ+SFGY F+K
Sbjct:  118 AANLASMLWLQRLKRLVLELDTPVITASWPASLQQLSFGYKFNK 161
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8751.16852.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ08_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 4.700e-7
Identity = 24/49 (48.98%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:   40 TAFAACLASALWPQTLKRLVFDSNMPVDTALWPASLQQISFGYGFDKPI 186
            T+ AA L  A+WP  +KR++FD+++PV+T  WPASL+Q+SF   F++ I
Sbjct:   24 TSSAASLGLAIWPLRIKRVLFDTDVPVNTVSWPASLRQLSFVGAFNQVI 72
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8751.16852.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLS8_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 1.020e-6
Identity = 31/74 (41.89%), Postives = 43/74 (58.11%), Query Frame = 1 
Query:    4 FEIPEEALLQRST---------------AFAACLASALWPQTLKRLVFDSNMPVDTALWPASLQQISFGYGFDK 180
            +E+P E LLQR+                + A+ L  A+ P  LKRL FDS+MPV+T  WPASLQ++SF   F++
Sbjct:   22 WELPVEVLLQRAATKPRTGVECQRPTGPSSASRLQRAIRPPNLKRLEFDSDMPVNTVSWPASLQELSFDTEFNQ 95
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8751.16852.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
Uncharacterized4.610e-1268.09protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized4.760e-968.18protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized4.700e-748.98protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.020e-641.89protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8751contigE_fasciculatus_S2_contig8751:1961..2207 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size247
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-08_000170.3
Cds size246
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842530.9721303-CDS-E_fasciculatus_S2_contig8751:1960..22061696842530.9721303-CDS-E_fasciculatus_S2_contig8751:1960..2206Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8751 1961..2206 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8751.16852.1prot_E_fasciculatus_S2_contig8751.16852.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8751 1961..2206 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8751.16852.1

>prot_E_fasciculatus_S2_contig8751.16852.1 ID=prot_E_fasciculatus_S2_contig8751.16852.1|Name=mRNA_E_fasciculatus_S2_contig8751.16852.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=82bp
AFEIPEEALLQRSTAFAACLASALWPQTLKRLVFDSNMPVDTALWPASLQ
QISFGYGFDKPIVDVVWPASLQQLSLGDSFDQ
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mRNA from alignment at E_fasciculatus_S2_contig8751:1961..2207+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8751.16852.1 ID=mRNA_E_fasciculatus_S2_contig8751.16852.1|Name=mRNA_E_fasciculatus_S2_contig8751.16852.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=247bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8751:1961..2207+ (Ectocarpus fasciculatus EfasUO2)
GCATTTGAAATTCCGGAGGAGGCTCTGCTGCAGCGTTCTACCGCTTTTGC
AGCATGTCTAGCATCGGCGCTTTGGCCTCAAACACTCAAGCGACTGGTGT
TTGATTCCAATATGCCCGTGGATACGGCCTTGTGGCCTGCCTCCCTGCAG
CAGATATCGTTTGGGTATGGATTCGACAAGCCCATTGTCGATGTCGTGTG
GCCTGCCTCTCTGCAGCAGCTATCGCTCGGTGATAGCTTCGACCAGC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8751:1961..2207+

>mRNA_E_fasciculatus_S2_contig8751.16852.1 ID=mRNA_E_fasciculatus_S2_contig8751.16852.1|Name=mRNA_E_fasciculatus_S2_contig8751.16852.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=246bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8751:1961..2207+ (Ectocarpus fasciculatus EfasUO2)
GCATTTGAAATTCCGGAGGAGGCTCTGCTGCAGCGTTCTACCGCTTTTGC
AGCATGTCTAGCATCGGCGCTTTGGCCTCAAACACTCAAGCGACTGGTGT
TTGATTCCAATATGCCCGTGGATACGGCCTTGTGGCCTGCCTCCCTGCAG
CAGATATCGTTTGGGTATGGATTCGACAAGCCCATTGTCGATGTCGTGTG
GCCTGCCTCTCTGCAGCAGCTATCGCTCGGTGATAGCTTCGACCAG
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