mRNA_E_fasciculatus_S2_contig8743.16847.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8743.16847.1
Unique NamemRNA_E_fasciculatus_S2_contig8743.16847.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8743.16847.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJF0_9PHAE)

HSP 1 Score: 156 bits (395), Expect = 1.690e-45
Identity = 74/77 (96.10%), Postives = 76/77 (98.70%), Query Frame = 3 
Query:  270 MGNHDRPQTTKSVLINMWSTLTIFLPIFIIVRFDLLWDLLMVWAAATSIMMIVPPVGWIRPHPYSDFLWNRRRSRAD 500
            MGNHDRPQTTKSVLINMWSTLTI LPIFIIVRFDLLWDLLMVWAAATSIMM+VPPVGWIRPHPYSDF+WNRRRSRAD
Sbjct:    1 MGNHDRPQTTKSVLINMWSTLTIVLPIFIIVRFDLLWDLLMVWAAATSIMMVVPPVGWIRPHPYSDFVWNRRRSRAD 77
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BLAST of mRNA_E_fasciculatus_S2_contig8743.16847.1 vs.
Match: Sulfotransferase (family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z948_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 1.120e-18
Identity = 44/77 (57.14%), Postives = 56/77 (72.73%), Query Frame = 3 
Query:  258 KVGVMGNHDRPQTTKSVLINMWSTLTIFLPIFIIVRFDLLWDLLMVWAAATSIMMIVPPVGWIRPHPYSDFLWNRRR 488
            K G M  HD+PQT KS++IN+WS ++I  P+ +IVR +    +L VW A T +MMIVPP GW+RPH YSDF WNRRR
Sbjct:  362 KSGRMAKHDKPQTLKSMVINLWSLVSILGPMVLIVRMETWQAVLAVWVAVTLLMMIVPPFGWLRPHAYSDFEWNRRR 438
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BLAST of mRNA_E_fasciculatus_S2_contig8743.16847.1 vs.
Match: Hypothetical (protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A8U7_TRICV)

HSP 1 Score: 56.2 bits (134), Expect = 1.160e-6
Identity = 39/98 (39.80%), Postives = 54/98 (55.10%), Query Frame = 3 
Query:  222 GVL*TERERERSKVGV----MGNH---DRPQTTKSVLINMWSTLTIFLPIFIIVRFDL----LWDLLMVWAAATSIMMIVPPVGWIRPHPYSDFLWNR 482
            G+   ERERER   G     M +    DR    KS+ IN+ +TL  FLPI     FD      +  ++ W+ A +  +++PP GW+RPHPYSDF WN+
Sbjct:    8 GMRKRERERERGSSGKGFLQMASSKKVDRGLDPKSIAINIATTLFFFLPI--AAYFDASNARFYCEVVGWSMALA--LLIPPFGWLRPHPYSDFAWNK 101
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8743.16847.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Uncharacterized1.690e-4596.10protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Sulfotransferase1.120e-1857.14family-domain-containing protein n=1 Tax=Tribonema... [more]
Hypothetical1.160e-639.80protein n=1 Tax=Trieres chinensis TaxID=1514140 Re... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8743contigE_fasciculatus_S2_contig8743:270..5292 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size811
Hectar predicted targeting categoryother localisation
Exons6
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-14_001320.1
Cds size234
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8743.16847.1prot_E_fasciculatus_S2_contig8743.16847.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8743 578..4264 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842530.483639-UTR-E_fasciculatus_S2_contig8743:269..5771696842530.483639-UTR-E_fasciculatus_S2_contig8743:269..577Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8743 270..577 -
1696842530.5486596-UTR-E_fasciculatus_S2_contig8743:4264..44711696842530.5486596-UTR-E_fasciculatus_S2_contig8743:4264..4471Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8743 4265..4471 -
1696842530.5588503-UTR-E_fasciculatus_S2_contig8743:5230..52921696842530.5588503-UTR-E_fasciculatus_S2_contig8743:5230..5292Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8743 5231..5292 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842530.4952936-CDS-E_fasciculatus_S2_contig8743:577..6321696842530.4952936-CDS-E_fasciculatus_S2_contig8743:577..632Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8743 578..632 -
1696842530.5047991-CDS-E_fasciculatus_S2_contig8743:1035..10651696842530.5047991-CDS-E_fasciculatus_S2_contig8743:1035..1065Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8743 1036..1065 -
1696842530.5147603-CDS-E_fasciculatus_S2_contig8743:2102..21411696842530.5147603-CDS-E_fasciculatus_S2_contig8743:2102..2141Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8743 2103..2141 -
1696842530.5249016-CDS-E_fasciculatus_S2_contig8743:3177..32271696842530.5249016-CDS-E_fasciculatus_S2_contig8743:3177..3227Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8743 3178..3227 -
1696842530.5374174-CDS-E_fasciculatus_S2_contig8743:4204..42641696842530.5374174-CDS-E_fasciculatus_S2_contig8743:4204..4264Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8743 4205..4264 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8743.16847.1

>prot_E_fasciculatus_S2_contig8743.16847.1 ID=prot_E_fasciculatus_S2_contig8743.16847.1|Name=mRNA_E_fasciculatus_S2_contig8743.16847.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=78bp
MGNHDRPQTTKSVLINMWSTLTIFLPIFIIVRFDLLWDLLMVWAAATSIM
MIVPPVGWIRPHPYSDFLWNRRRSRAD*
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mRNA from alignment at E_fasciculatus_S2_contig8743:270..5292-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8743.16847.1 ID=mRNA_E_fasciculatus_S2_contig8743.16847.1|Name=mRNA_E_fasciculatus_S2_contig8743.16847.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=5023bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8743:270..5292- (Ectocarpus fasciculatus EfasUO2)
CTTGCTCCGTGGTACGTACAACGCAGCGACAGCTCAGGACCAACGCCGAC
CTGCTGTCGAAGGTAAGCAGGAACTGTAAAAATGATATGCCATGCCGCCA
ACTGAACGAAAAGAGAGTTGAAGCTTGCAAGATATATGAATCGGGAGTCG
AAGTGTCGAAGTGCGTGCATACATATGCATACATTGCGCACGGAGGGAAG
TAGGAGGTAGAGTCCTACTTGGCCGTTGTGTGCCGGAAGCCTGTGCAGCA
GCTACAAGACCACGACGGATGTCCAATCACCAACGAGTTCCACGCAACCG
ACGTGCGTGCAAGCTGAAGAAGAGCAACAGCTGGAATGGGCTGGTACACA
AAAAAAGAAACAGACCCTTCCAATCCAGGTTCAAGGGGTCCTAACGTCCT
AACTCCTACAGCAGTACATAACAGCACAGCAGCGCTGCTGTCATATCATA
TGCATACATGCTGTAGCTTAGCTTGGGACAAGAGAGCCACGGCTCTCCGC
ACCGGGCGTACCTATGTGTCACAAATCGGTGCCTTCAACGGTTAGCTCTA
GATCATGGTAATGGTCTGTGGCCTCGTGACTAAATTTGTCCACGGATCGT
GGGCGGCGTTCGAATGTAGTCATGTCATGGGCGTATCTCGAAGCGAGTGC
AAAATTAAAAGCAAGTTGATGTTTTCCCGCATGGCACATGCAGCCATGCA
GCCGGTGGAAAACAGGAACATCCAGTAACAGCACGCCGACACCGCTGCCG
CTCATGCCTCCCACCCACCCCTGCTACCTGTGTTGTTCTACCTGTGTTTC
TGGTACCATCTTCTAATCAAGGTTCTTGACATCGTGAGTCAAGATCCAGC
GAGAAGAACAAACACAAACATCGCCCAGGACACCAAGGACGAGGCAACAG
AGACACGACACGGCTCGTTCGCTTGCACCACAGGGGCAAGGCGGCGGCTG
GGTATAAAGAGGTTGTGCGTGGTGCGGCCAGGCGTACTGTAGACAGAGCG
GGAAAGGGAGAGAAGCAAGGTCGGAGTTATGGGGAACCACGACAGGCCCC
AGACCACCAAGAGCGTCCTCATCAACATGTGGTCTACGGTAAGTGAAGAA
TGAGGAGAAGAGAGCAATAAACGCGGGACTGCTGTATGAAGTGCTACCGC
CTTCAAAGGTCACTGCTGTTCTAATTTGATCCTTGCAGCATGTAGGCATG
AATAGCGGTGTACATGGAAATGTTCGATACGGTTTTCTGGTCTAGTTGGC
GGCCGAGTCACGAGTCTGGGAACCGGTCGCCGACGATGGTATCAGCGAAT
TTCTGGATAGATATCAGAGCGTTTTGTTTTGCGAGGAAGACAACAAACGA
CAACAGCAGCACGCCGACGATGGTATCAGCAAATTTCTGGATAGATATCA
GAGCGTTTTTTTCTGCGAGGAAGACAACAAACGACAACAGCAGCAGCAAC
AACAGCAACAGCAACAGTAGCAGCGCACCGCATCAGCAAGTCCTAACTGC
CAATCAAGGGGGATATTTCGCCGACATGTCGGGGTCGTGTATGTCTCCTT
CCGAACAAGAGCTTGCGACGCAGCCTCAGGTTGCGAGGTGACGGCAGAAG
TTTCCCGGAAAACTCTGCCATGGACAAGCTGATGCTTCGATCTTGTAATA
TACCCGGCGCGGAGCTTGCTCACCTCGGGGCGCTCTTTGCTTAACCTATC
CCGCCTTTTGCTGACGCTACTGAAAAATCCAGGAAAATTATCTCCTTTTC
CTAGGAAAGAAAACGTGTCATGATGAATCTATGTAGAGCAGGAATCACAG
ATAGGCGGGCTGCCCTTGTCAAGGTTTGAAGCCCGTGATTTGCCCGACGG
CACGAGCTTGAGGAGTCAAGTTACCATCGAACAACAACCCGTCGAGGTTC
TCCGAACTAAAGAGGCTAGAAAATTTTACCTGCCGCGGTACTGATTTACC
CCCGCCCTTCCGCCTGCCCTCTTGCGCGTACCGCACGCGCTCTCCTCATG
TTGCGTGGTGATGGGTGTCGTTTTCTGCCGACGCCCTCGGGTATGGCGGT
GGTGGATGGCTGCAGCTGACCATCTTCCTACCAATCTTCATCATCGTCAG
GTTCGATCTATTGTGGTGAGTGCGTGAGCGAGTGCGTGAGTGAGACAGCA
GGCAAGACGGGGATAAGCGGAAGCCCGTCCCTTCAGCGTCGAAACATTTT
AGTTTTTGTCAGCGCGCCGAAGATTTGAGTCCAGCCCCGTCCACCGTCCT
ATCAAATGTCTTCAGTTGTTTTTATTTCGTCCGCATGGTTGTCTACACAC
CAGCCCTGATCTCTTTCCTTCAAGCTCTCCGATGAAGCTCAAGTTTTGTG
GTACATTTACCGATCATCGATACCGTCAGTTGTTGAGTTGAGGCGACGAG
GGCGTGGGGCGAATCGTGATCGTTTGACGGGAGCAGGCGGATTGCGCGAA
TGTAAATGAACGCCAGGGGTTGCGAAAGAAGCGCCCACGGTTTTCGTCTC
CCGCCTTTGTCAAAGCCGTCGTTTACTAAATTTAGCCTGCCTTCATTTAT
GGGGGTTCCACAACGTAGTTGTGGCTACTCCAGGAGCCGACCCTCCCCAG
GGTGCTCGGCAGATTTTTCTTGAAGATTTATCCGGGGCTGGGCGGAGCAG
CTTTTCCATTACCCGCTCCGTGAATTTCACTGGGAAATGGGTAGTATGTA
GCACTCCAGGCTTTCCCGTTTCGAAACCCGCTCCGTGAATATCACTGCAA
CCTCGTTGTAACCGCAGGACGACCACCGGCTCTGTTACACCGTCATCTTC
CTTATGTTTCTTCTTCTCGCCCCATCCATCCCTTCCCGTGCCTTCGTTCG
CGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGCCGCCCGCCCC
TGCTTTGGGTGTTCCCTCTTTTTCATACAATGACCTCGTACTGGCTAGGT
GNNNNNNNNCTCGCTACTACTACTGCTGTCCTCGTCGTATTCCTCGCTGC
TGCTGTCTTCTTCTTCAGACTCACTCTCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCTCGTCCCCCCCCCCCCCCCCCCCCCCCCCGGTGGCGCCTACG
TGCGTGTATTCGACTGTTTGACCTTAACCTTACAACCACGCGGCTGCGAA
GGGATTTGCTAATGGTGTGGGCGGCGGCAACATCGATCATGTGAGAGACA
GAGAGCACATGGGTGTGGAAAACGAAGTGTTTCGCCGATGCATCTTCCGA
ATATATTCTCCGTTCTCTTACTTTTCATGTAATTGAGAGCACGAATAGCC
CTTGTGCGAGTATCCGGCTATTTGTCGAGACTAATGCTCTTCGATATGGA
GCATGACTGATTGCTGTCTGGTTGTGACTTGGTCTATAGCGGACAGGCCT
AACCGCTGTCTATTATAGCACATGGCACACTTTTTCTCGTGACGGCCTGT
GAGCACATACCGTTGTAGAATCGGGAGTGGACCTGGAGCACTGGCCTCTG
ATCAAGGGCCCGCCTCGCTTCTGCGTTTGCGTCCTCATTCGACGCATCAG
AAGCTAGTCTGCCGCCACCTGCCTACTGCTGTCCTTCCGTCTCTTCATGT
GCTCTGTAGCTTGCGCTCGTTCTCGTACACGACTTGCTACAGCAAATACG
TGATATCCTCCACGGAAGGACAGAAAGAGTATTATTATAGAGGTTCTCCC
CTCTGGTGACCCCGGGTTTCCGAGAGATGTAGAGGCATTGGATTCTTCGG
ATTAGCGTTAAATGACAGTCTCTTCCGTCTGCGCGATAAAGAAATAGTTC
TCTGGTCGTTGCTCTAACCGCCTCGCGGTAGATTTTCACGGCAAGCGCCG
CGGGAATAAAAGGCTGGGAAGAAAAAAATCTCCTGAGTTTATTCCTCCCT
ATTTGTGTGACCCCGCCGTCTGTTGCCCAGGATAGTAGACGGGAGCGACA
TACACATAGTCGTTGTCTTGAAGCTCTACACATGCCCTCAAAGAGTTAGT
TCTGTAAGTACTCATTGCGAAATTTCGGCGATATTGTTCGTCTAAACCTT
CGGTGTCCAATATTTTTTGCCCGCGTTTCCACCCCCCTTTTCTTTTTCTT
TTTTTTTCTGTTCCCTCACCCGCCTGTTCTCCCTCCCGCCTGCGGAATCT
TCCTCTAAACAATGACATGCGACCCGTACTGCCTTCCTACATGGCCTCTC
GTCGCCTCTCATGGCATGGCCTCTCAGGATGATCGTGCCTCCGGTGGGAT
GGATCAGGTACGGTATGCGACACCGATGTTCGCGACAGAGTTAGTTTTAG
TCGGCTTGTTTTGCGGGATGATTGGGCACCAGCAATTTTGGGAGCGGGGG
GTCGAGGACTGCTGTAAGTCAGTCCCCCCTCCGAAAAGCAACATGCAACT
TACGTACGTCCGTTGCTTTCGTTGGCACACGCCGCATTTCCGCAGACTTT
TTTTGGTCGGGGTACCTCTCTTGCCCCCCTCCCGCCGCCTCCAAATCTCA
TCATGTCTCTATTTATCGTGCGTGTGTTGCTTGATTGATCGCTCATTTGT
CTCCTGCTCTTGCCCCCCTTTTTCCCTCTTTGCTTCGCTGCTTGCCTTTG
CTTCTGTCACACCCCATCCGGTTGTGCCCGCACCCCGAAACCGTTTTGCG
CGGAGTGCAGGCCACACCCGTACTCAGATTTCCTGTGGAATCGCCGTCGG
TCAAGGGCAGACTGAAGCAAGATAAAGGACATGAAAGACAACCAAGACAT
GGAGGGAGGAGGGTTAGACTAACGGCGACGCGCGTGCGTTGGAGCGGACC
GGAGATCTTCCACGGAACCCAGACGGAGATCTAATGGAGCGGACCGGAGA
TCTTCCACGGAAGCCAGACGGGGATCTAATGGAGCGGACCGGAGATCTGC
CTGCATGAGTGGTGGGCGTGCCCCCGGGACGAAGCCTTCAACTCGGATGT
AAACGAGTTAGTTTTCGTGTCGGGACCCAAGGGAGACTGATCGATCGAGG
ACAGCTTGAACGTCGATCGCCAT
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8743:270..5292-

>mRNA_E_fasciculatus_S2_contig8743.16847.1 ID=mRNA_E_fasciculatus_S2_contig8743.16847.1|Name=mRNA_E_fasciculatus_S2_contig8743.16847.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=234bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8743:270..5292- (Ectocarpus fasciculatus EfasUO2)
ATGGGGAACCACGACAGGCCCCAGACCACCAAGAGCGTCCTCATCAACAT
GTGGTCTACGCTGACCATCTTCCTACCAATCTTCATCATCGTCAGGTTCG
ATCTATTGTGGGATTTGCTAATGGTGTGGGCGGCGGCAACATCGATCATG
ATGATCGTGCCTCCGGTGGGATGGATCAGGCCACACCCGTACTCAGATTT
CCTGTGGAATCGCCGTCGGTCAAGGGCAGACTGA
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