mRNA_E_fasciculatus_S2_contig8740.16845.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8740.16845.1
Unique NamemRNA_E_fasciculatus_S2_contig8740.16845.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8740.16845.1 vs.
Match: Metacaspase (n=3 Tax=Ectocarpus TaxID=2879 RepID=D7G061_ECTSI)

HSP 1 Score: 112 bits (280), Expect = 2.530e-27
Identity = 52/56 (92.86%), Postives = 54/56 (96.43%), Query Frame = 1 
Query:    1 PEGVVLSVVMDCCHSGSILDLPYTFDADEGALQLVDDGGSGVAHKKAKFNMTKVRK 168
            PEGVVLSVV+DCCHSGSILDLPYTFDADEGALQLVDDGGSGV  KKAKFNMTK+RK
Sbjct:  278 PEGVVLSVVVDCCHSGSILDLPYTFDADEGALQLVDDGGSGVVLKKAKFNMTKIRK 333
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BLAST of mRNA_E_fasciculatus_S2_contig8740.16845.1 vs.
Match: Metacapase (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTK1_ECTSI)

HSP 1 Score: 112 bits (280), Expect = 2.540e-27
Identity = 51/56 (91.07%), Postives = 54/56 (96.43%), Query Frame = 1 
Query:    1 PEGVVLSVVMDCCHSGSILDLPYTFDADEGALQLVDDGGSGVAHKKAKFNMTKVRK 168
            PEGVVLSVVMDCCHSGSILDLPYTFDADEGALQLVDDGGS V HKKAKFNM+K++K
Sbjct:  273 PEGVVLSVVMDCCHSGSILDLPYTFDADEGALQLVDDGGSAVVHKKAKFNMSKMKK 328
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BLAST of mRNA_E_fasciculatus_S2_contig8740.16845.1 vs.
Match: Metacaspase (n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ59_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 3.740e-20
Identity = 41/53 (77.36%), Postives = 46/53 (86.79%), Query Frame = 1 
Query:    1 PEGVVLSVVMDCCHSGSILDLPYTFDADEGALQLVDDGGSGVAHKKAKFNMTK 159
            PEGVVLSVVMDCCHSGSILDLPY+FDA +GAL+LV+ GGSGV  KK  FN+ K
Sbjct:  293 PEGVVLSVVMDCCHSGSILDLPYSFDAKDGALELVEAGGSGVMQKKKNFNVKK 345
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BLAST of mRNA_E_fasciculatus_S2_contig8740.16845.1 vs.
Match: Hypothetical (protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4R0W6_9DINO)

HSP 1 Score: 65.5 bits (158), Expect = 8.010e-11
Identity = 28/54 (51.85%), Postives = 36/54 (66.67%), Query Frame = 1 
Query:    1 PEGVVLSVVMDCCHSGSILDLPYTFDADEGALQLVDDGGSGVAHKKAKFNMTKV 162
            PEGV L+ V+DCCHSG+ILDLPY F AD+G+L  V DG      +   F+  K+
Sbjct:  423 PEGVTLTCVLDCCHSGTILDLPYMFKADDGSLASVADGTFNEMQENPNFDFGKI 476
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BLAST of mRNA_E_fasciculatus_S2_contig8740.16845.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY89_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 1.050e-10
Identity = 30/55 (54.55%), Postives = 35/55 (63.64%), Query Frame = 1 
Query:    1 PEGVVLSVVMDCCHSGSILDLPYTFDADEGALQLVDDGG-SGVAHKKAKFNMTKV 162
            PEGV L+VVMDCCHSGSILDLPY   A+EG +  V+ G  S        F+  KV
Sbjct:  141 PEGVTLTVVMDCCHSGSILDLPYALKANEGTISAVEAGEVSSTISANPSFDFAKV 195
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BLAST of mRNA_E_fasciculatus_S2_contig8740.16845.1 vs.
Match: Metacapase (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0P1_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 2.590e-10
Identity = 27/38 (71.05%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:    1 PEGVVLSVVMDCCHSGSILDLPYTFDADEGALQLVDDG 114
            PEGV L+VVMDCCHSGSILDLPY   ADEG +  V+ G
Sbjct:  284 PEGVTLTVVMDCCHSGSILDLPYALKADEGTISAVEAG 321
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BLAST of mRNA_E_fasciculatus_S2_contig8740.16845.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4PGC7_9EUKA)

HSP 1 Score: 61.6 bits (148), Expect = 1.710e-9
Identity = 27/56 (48.21%), Postives = 35/56 (62.50%), Query Frame = 1 
Query:    1 PEGVVLSVVMDCCHSGSILDLPYTFDADEGALQLVDDGGSGVAHKKAKFNMTKVRK 168
            P GV ++ +MDCCHSGSILDLPYT   D  +LQ + DG      K  KF M  +++
Sbjct:  258 PRGVHVTAIMDCCHSGSILDLPYTIQMDGKSLQRIKDGEPVETTKNPKFTMAGLQR 313
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BLAST of mRNA_E_fasciculatus_S2_contig8740.16845.1 vs.
Match: Hypothetical (protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MFT1_9CRYP)

HSP 1 Score: 61.2 bits (147), Expect = 2.300e-9
Identity = 31/52 (59.62%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:    1 PEGVVLSVVMDCCHSGSILDLPYTFDADEGALQLVDDGGSGVAHK-KAKFNM 153
            PEGV+L+VVMDCCHSGSILDLPY F A E  +Q     G+ +A K  + FNM
Sbjct:  267 PEGVLLTVVMDCCHSGSILDLPYEFTATEANMQA----GAPIALKPNSSFNM 314
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BLAST of mRNA_E_fasciculatus_S2_contig8740.16845.1 vs.
Match: Hypothetical (protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0YNU0_9CRYP)

HSP 1 Score: 60.8 bits (146), Expect = 3.310e-9
Identity = 27/56 (48.21%), Postives = 34/56 (60.71%), Query Frame = 1 
Query:    1 PEGVVLSVVMDCCHSGSILDLPYTFDADEGALQLVDDGGSGVAHKKAKFNMTKVRK 168
            P+G  L+VVMDCCHSGSILDLPY F+A +  LQ    G    +     F+ +K  K
Sbjct:  307 PDGCQLTVVMDCCHSGSILDLPYNFEASDNNLQAASSGAMPQSMPNPGFDFSKALK 362
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BLAST of mRNA_E_fasciculatus_S2_contig8740.16845.1 vs.
Match: Hypothetical (protein n=3 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1H0Z8_HEMAN)

HSP 1 Score: 59.3 bits (142), Expect = 1.140e-8
Identity = 27/56 (48.21%), Postives = 32/56 (57.14%), Query Frame = 1 
Query:    1 PEGVVLSVVMDCCHSGSILDLPYTFDADEGALQLVDDGGSGVAHKKAKFNMTKVRK 168
            PEG  L+VVMDCCHSGSILDLPY F+A +  L     G    +     F+  K  K
Sbjct:  278 PEGCQLTVVMDCCHSGSILDLPYNFEASDSNLAAAASGSMPQSLPNGSFDFNKALK 333
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8740.16845.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Metacaspase2.530e-2792.86n=3 Tax=Ectocarpus TaxID=2879 RepID=D7G061_ECTSI[more]
Metacapase2.540e-2791.07n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8... [more]
Metacaspase3.740e-2077.36n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ59_ECTSI[more]
Hypothetical8.010e-1151.85protein n=1 Tax=Alexandrium monilatum TaxID=311494... [more]
Uncharacterized1.050e-1054.55protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Metacapase2.590e-1071.05n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7... [more]
Hypothetical1.710e-948.21protein (Fragment) n=1 Tax=Paramoeba aestuarina Ta... [more]
Hypothetical2.300e-959.62protein n=1 Tax=Cryptomonas curvata TaxID=233186 R... [more]
Hypothetical3.310e-948.21protein n=1 Tax=Hemiselmis tepida TaxID=464990 Rep... [more]
Hypothetical1.140e-848.21protein n=3 Tax=Hemiselmis andersenii TaxID=464988... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8740contigE_fasciculatus_S2_contig8740:6275..6478 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score95.9
Seed ortholog evalue6.7e-18
Seed eggNOG ortholog2880.D8LTK1
Preferred nameMCA5
Model size204
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.cysteine-type peptidase activity
EggNOG OGsKOG1546@1,KOG1546@2759
Cds size177
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842530.3821373-CDS-E_fasciculatus_S2_contig8740:6274..64511696842530.3821373-CDS-E_fasciculatus_S2_contig8740:6274..6451Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8740 6275..6451 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842530.392732-UTR-E_fasciculatus_S2_contig8740:6451..64781696842530.392732-UTR-E_fasciculatus_S2_contig8740:6451..6478Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8740 6452..6478 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8740.16845.1prot_E_fasciculatus_S2_contig8740.16845.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8740 6275..6451 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8740.16845.1

>prot_E_fasciculatus_S2_contig8740.16845.1 ID=prot_E_fasciculatus_S2_contig8740.16845.1|Name=mRNA_E_fasciculatus_S2_contig8740.16845.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=59bp
MDCCHSGSILDLPYTFDADEGALQLVDDGGSGVAHKKAKFNMTKVRKWNT
NLGEDLIKS
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mRNA from alignment at E_fasciculatus_S2_contig8740:6275..6478-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8740.16845.1 ID=mRNA_E_fasciculatus_S2_contig8740.16845.1|Name=mRNA_E_fasciculatus_S2_contig8740.16845.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=204bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8740:6275..6478- (Ectocarpus fasciculatus EfasUO2)
CCGGAGGGCGTCGTTCTGTCCGTGGTTATGGATTGCTGCCACAGCGGCTC
CATCCTTGACCTGCCCTACACCTTCGACGCCGACGAGGGGGCCCTTCAGC
TGGTGGACGACGGCGGCTCTGGGGTCGCGCACAAGAAGGCCAAGTTCAAC
ATGACCAAGGTTAGAAAATGGAACACAAACTTGGGTGAAGACTTGATCAA
ATCG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8740:6275..6478-

>mRNA_E_fasciculatus_S2_contig8740.16845.1 ID=mRNA_E_fasciculatus_S2_contig8740.16845.1|Name=mRNA_E_fasciculatus_S2_contig8740.16845.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=177bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8740:6275..6478- (Ectocarpus fasciculatus EfasUO2)
ATGGATTGCTGCCACAGCGGCTCCATCCTTGACCTGCCCTACACCTTCGA
CGCCGACGAGGGGGCCCTTCAGCTGGTGGACGACGGCGGCTCTGGGGTCG
CGCACAAGAAGGCCAAGTTCAACATGACCAAGGTTAGAAAATGGAACACA
AACTTGGGTGAAGACTTGATCAAATCG
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