mRNA_E_fasciculatus_S2_contig8735.16841.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8735.16841.1
Unique NamemRNA_E_fasciculatus_S2_contig8735.16841.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8735.16841.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ22_ECTSI)

HSP 1 Score: 239 bits (610), Expect = 7.570e-76
Identity = 128/138 (92.75%), Postives = 128/138 (92.75%), Query Frame = 1 
Query:    1 MRSVRAKFLKDFAPLHRLGLVWCERAAPPLLLADDSGEGGSLWRDCLAIVRNLTLLNNARVASGGTAG--GPDGSAEEAIAKESAALCDNTVVLDGEGMRSALRLAAHPVNAPAKELLGLLESLVLRAARSRAMHKVS 408
            MR VRAKFLKDFAPLHRLGLVWCERAAPPLLLADDSGEGGSLWRDCLAIVRNLTLLNNAR ASG      GPDGSAEEAIAKESAALCDNTVVLDGEGMRSALRLAAHPVNAPAKELL LLESLVLRAARSR MHKVS
Sbjct:    1 MRLVRAKFLKDFAPLHRLGLVWCERAAPPLLLADDSGEGGSLWRDCLAIVRNLTLLNNAR-ASGXXXXXXGPDGSAEEAIAKESAALCDNTVVLDGEGMRSALRLAAHPVNAPAKELLALLESLVLRAARSRVMHKVS 137
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BLAST of mRNA_E_fasciculatus_S2_contig8735.16841.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4I3_9PHAE)

HSP 1 Score: 209 bits (532), Expect = 2.360e-58
Identity = 114/131 (87.02%), Postives = 114/131 (87.02%), Query Frame = 1 
Query:   43 LHRLGLVWCERAAPPLLLADDSGEGGSLWRDCLAIVRNLTLLNNARVASGGTAG-----GPDGSAEEAIAKESAALCDNTVVLDGEGMRSALRLAAHPVNAPAKELLGLLESLVLRAARSRAMHKVSSAGA 420
            LHRL LVWCERAAPPLLLADDSGEGGSLWRDCLAIVRNLTLLN AR ASG         GPDGSAEEAIAKESAALCDNTVVLDGEGMRSALRLAAHPVNAPAKELL LLESLVLRAARSR MHK  S GA
Sbjct:  826 LHRLSLVWCERAAPPLLLADDSGEGGSLWRDCLAIVRNLTLLNTAR-ASGXXXXXXXXXGPDGSAEEAIAKESAALCDNTVVLDGEGMRSALRLAAHPVNAPAKELLALLESLVLRAARSRVMHKAGSGGA 955
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8735.16841.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized7.570e-7692.75protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized2.360e-5887.02protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8735contigE_fasciculatus_S2_contig8735:1119..2524 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size717
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-02_004430.1
Cds size717
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842529.9024627-CDS-E_fasciculatus_S2_contig8735:1118..11601696842529.9024627-CDS-E_fasciculatus_S2_contig8735:1118..1160Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8735 1119..1160 +
1696842529.9150116-CDS-E_fasciculatus_S2_contig8735:1485..18171696842529.9150116-CDS-E_fasciculatus_S2_contig8735:1485..1817Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8735 1486..1817 +
1696842529.9339712-CDS-E_fasciculatus_S2_contig8735:2181..25241696842529.9339712-CDS-E_fasciculatus_S2_contig8735:2181..2524Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8735 2182..2524 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8735.16841.1prot_E_fasciculatus_S2_contig8735.16841.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8735 1119..2524 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8735.16841.1

>prot_E_fasciculatus_S2_contig8735.16841.1 ID=prot_E_fasciculatus_S2_contig8735.16841.1|Name=mRNA_E_fasciculatus_S2_contig8735.16841.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=239bp
MRSVRAKFLKDFAPLHRLGLVWCERAAPPLLLADDSGEGGSLWRDCLAIV
RNLTLLNNARVASGGTAGGPDGSAEEAIAKESAALCDNTVVLDGEGMRSA
LRLAAHPVNAPAKELLGLLESLVLRAARSRAMHKVSSAGAGGGVPLGVGT
ASTSGSSSSGAGGTMATPAKKPRLAAISPSSASPAGRSGAGAGGGGRRTT
AIGSPGAAGAGGAARQAGGGGASMLIVKKADVEDGILVE
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mRNA from alignment at E_fasciculatus_S2_contig8735:1119..2524+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8735.16841.1 ID=mRNA_E_fasciculatus_S2_contig8735.16841.1|Name=mRNA_E_fasciculatus_S2_contig8735.16841.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1406bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8735:1119..2524+ (Ectocarpus fasciculatus EfasUO2)
ATGAGATCGGTCCGCGCGAAGTTCCTGAAAGATTTCGCTCCGGTGGGTGT
CGTATTCTTTAGCGGGCGGGTGGTGTTGTTGTTGTTGTACAGGACGGGTG
TTACTGCTCTCTTTTGAGGTAGGGATGGTTGGATGCTTTGTGTATGGCTT
GTCGATATCTCAGGGTCTCAAAGAAAGAAGGCTTTTCACGCCCTCGCGGG
AACATTTTTGTCGTTTCTAGAATGGTAATGTTACGCTCGACCCTTTGTAG
TTAGCATCTGTTCTTGATCATTTATGTACCGCCCTGTAGACGCAAAATCG
GTGTCACCAATGGAAGCGTATTTTTGTGCCCACAAACATCACCGTCTCTC
TTTCGCTCCCAAAACAGCTCCACCGCCTAGGCCTGGTGTGGTGCGAGCGG
GCGGCGCCCCCTCTCCTCCTAGCCGACGACTCCGGAGAGGGAGGCAGCCT
GTGGCGTGACTGTCTCGCCATCGTGCGGAACCTGACGCTGTTGAATAACG
CCCGGGTGGCTAGCGGCGGCACCGCGGGGGGTCCGGATGGTTCGGCGGAG
GAAGCCATCGCGAAGGAGTCGGCGGCCCTGTGCGACAACACGGTCGTCCT
CGACGGGGAAGGGATGCGGTCCGCGCTGAGGCTGGCGGCGCACCCGGTCA
ACGCGCCCGCCAAGGAGCTGCTCGGGTTGCTGGAATCTCTCGTTCTCAGG
TGTGTGCGCAAGGTGGGCTGGTCGGCTGTGTTTGTATTGGTCCGTGTCGA
CAACGCACGGGGGGAGGGCGTTGTACTCATGGCCGTGCATGCCGTACTCG
TTAGACGCAGGGAGGCGGGGGGTTGTTCCAGCATCAGCGTTGCAGGGAAG
TCTTGTTTGTGGTGTGGGGCAGCTGTTTCTGTTCAGCAGCGAGTGTCGTT
GGGTTGCGTTGCCGAAGGAAGGGTGGGGGAGAAGGAGAGAGTTAGGAGGG
GGGAGAAAGAAATAGGTCGCCTCTTTTAGGACCCACCAGATCAGCGGGTT
ATCCTTGACGCCACTTTTTTTTTTTGGTGCATGCCAACGTACGCCGCACG
CGATACAACGCAGGGCGGCCAGGAGCCGCGCGATGCACAAGGTCAGCAGC
GCCGGTGCAGGCGGCGGAGTCCCTCTCGGCGTCGGCACCGCCAGCACATC
CGGTAGCAGCAGCTCTGGCGCCGGCGGCACCATGGCCACACCGGCGAAGA
AGCCGCGTCTAGCCGCCATCTCGCCTTCATCCGCTAGTCCAGCCGGTCGC
AGCGGCGCCGGCGCTGGCGGCGGTGGAAGGAGAACGACTGCGATCGGCAG
TCCCGGCGCGGCGGGGGCGGGCGGAGCTGCCAGGCAGGCGGGGGGCGGGG
GGGCCAGCATGTTGATCGTGAAGAAAGCGGACGTGGAAGATGGCATCCTC
GTGGAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8735:1119..2524+

>mRNA_E_fasciculatus_S2_contig8735.16841.1 ID=mRNA_E_fasciculatus_S2_contig8735.16841.1|Name=mRNA_E_fasciculatus_S2_contig8735.16841.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=717bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8735:1119..2524+ (Ectocarpus fasciculatus EfasUO2)
ATGAGATCGGTCCGCGCGAAGTTCCTGAAAGATTTCGCTCCGCTCCACCG
CCTAGGCCTGGTGTGGTGCGAGCGGGCGGCGCCCCCTCTCCTCCTAGCCG
ACGACTCCGGAGAGGGAGGCAGCCTGTGGCGTGACTGTCTCGCCATCGTG
CGGAACCTGACGCTGTTGAATAACGCCCGGGTGGCTAGCGGCGGCACCGC
GGGGGGTCCGGATGGTTCGGCGGAGGAAGCCATCGCGAAGGAGTCGGCGG
CCCTGTGCGACAACACGGTCGTCCTCGACGGGGAAGGGATGCGGTCCGCG
CTGAGGCTGGCGGCGCACCCGGTCAACGCGCCCGCCAAGGAGCTGCTCGG
GTTGCTGGAATCTCTCGTTCTCAGGGCGGCCAGGAGCCGCGCGATGCACA
AGGTCAGCAGCGCCGGTGCAGGCGGCGGAGTCCCTCTCGGCGTCGGCACC
GCCAGCACATCCGGTAGCAGCAGCTCTGGCGCCGGCGGCACCATGGCCAC
ACCGGCGAAGAAGCCGCGTCTAGCCGCCATCTCGCCTTCATCCGCTAGTC
CAGCCGGTCGCAGCGGCGCCGGCGCTGGCGGCGGTGGAAGGAGAACGACT
GCGATCGGCAGTCCCGGCGCGGCGGGGGCGGGCGGAGCTGCCAGGCAGGC
GGGGGGCGGGGGGGCCAGCATGTTGATCGTGAAGAAAGCGGACGTGGAAG
ATGGCATCCTCGTGGAG
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