mRNA_E_fasciculatus_S2_contig8733.16840.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8733.16840.1
Unique NamemRNA_E_fasciculatus_S2_contig8733.16840.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8733.16840.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8733contigE_fasciculatus_S2_contig8733:3996..5768 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size279
Hectar predicted targeting categoryother localisation
Exons4
Cds size276
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842529.8296702-CDS-E_fasciculatus_S2_contig8733:3997..40331696842529.8296702-CDS-E_fasciculatus_S2_contig8733:3997..4033Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8733 3998..4033 -
1696842529.8409114-CDS-E_fasciculatus_S2_contig8733:4550..46481696842529.8409114-CDS-E_fasciculatus_S2_contig8733:4550..4648Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8733 4551..4648 -
1696842529.8516004-CDS-E_fasciculatus_S2_contig8733:5140..51981696842529.8516004-CDS-E_fasciculatus_S2_contig8733:5140..5198Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8733 5141..5198 -
1696842529.8621652-CDS-E_fasciculatus_S2_contig8733:5684..57681696842529.8621652-CDS-E_fasciculatus_S2_contig8733:5684..5768Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8733 5685..5768 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8733.16840.1prot_E_fasciculatus_S2_contig8733.16840.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8733 3998..5768 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8733.16840.1

>prot_E_fasciculatus_S2_contig8733.16840.1 ID=prot_E_fasciculatus_S2_contig8733.16840.1|Name=mRNA_E_fasciculatus_S2_contig8733.16840.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=92bp
GPGPERRGHSHQPWQCAQTGRGIGRGDSGVRGSYASRQQQPDGGLQPGRN
LAGQLRGREGDRVLQPHHPDRPGLCGRSLQPGNMPGDSGPFR
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mRNA from alignment at E_fasciculatus_S2_contig8733:3996..5768-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8733.16840.1 ID=mRNA_E_fasciculatus_S2_contig8733.16840.1|Name=mRNA_E_fasciculatus_S2_contig8733.16840.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1773bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8733:3996..5768- (Ectocarpus fasciculatus EfasUO2)
GGACCTGGACCCGAGCGACGTGGACATTCACATCAGCCTTGGCAATGTGC
TCAGACAGGACGGGGAATCGGCCGCGGCGATAGCGTGAGCGCCGGGTTTA
TTTTGTTGTGTCCCGTTTTGATGGGTTTTTCTTCTACATATCTCCTTGTT
GTTTGTTAGACTTTCTTTTTTTTGTTATTCTGCACATTTGTTCTCCAAAC
TGGAACACATCGACGGAGGGCTTCAGTAAGTATGGAGGGCGTTTGCGCTG
CTGTAGTGAGAGTGGTCGATGTGTTCTGCAATGAGTCCTCCGAGTTCTGC
CATCGAGATATATATATCTATATGAAAAAGAAGTGGTACGTTGTTCGAGG
AGTGTTTTGTGCCGATTCCCTTGCCCTTACAAAAATGTCTCGACAGGCAT
GCATGTATGTTGTACGTGGTCTGCTGAAATACACTTGTACCATGCACGTA
CAAAACTCATGTTTTTTGGCGATTTTCTCTACACTACATATGTGACATGA
CACATAACGACGCCGTTTGTCTTTCTTTCACTGCTGCTGTACCGTCTTCG
TACCCCCTTGCCCGGCGCAGGGCGTACGAGGAAGCTATGCATCTCGACAG
CAACAACCGGATGGCGGCTTACAACCTGGTACGGATAAAGAAGGATAATA
TGCATACATACCGCGGAAAATCTATTCATACTCTCTCGAAAGGGAGGGTT
GCCTTGCCTGGCGGTGTACGAATTAGCCCCGCCCTCTTTGAGTGGCTGGC
AGGCGATTCAGTTGAAGCGCAACTTATGCTGTACTGATTTTCGGAGATTT
TAGCAGCAATTCGTTGTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTTTTCGAGAATCACGCAGATGTGCTTCCTCACGTCTTGTTCACGTCTCT
GCCATTCTGCAGCTCGTACTCGAGTATGCGTTAAGCTCGCTGTGGCGTTT
TATGACACATGGGCAAAGGTAAAACGCTGGTTACCCCTCCTCTCTCTCTT
TGTTTTCCTTCTGGTAAAGTTTGTTGCGACGAAAACCGTTTGATGTTAAC
CGTTTGTGCTCTCTCTTCTTTTTTTTTTGTGGCGGCGTGCGCTTTCTACC
GTGTATTCGTGTGCTTGCAGGGAGGAATCTTGCAGGACAACTTCGAGGAA
GAGAAGGCGATCGAGTGCTTCAACCGCACCATCCAGATCGACCCGGATTA
TGCGGACGCTCACTACAAGTGAGTCTCTCGTTCCGTCGTACACATCGCAA
TACTATTATATTTGTCAAAATTTTGTATGGTGGACACGCTCATCTCTCTT
CTGCTGTGTCAGTCGATTTCTTGTGCTTACTTTTTTGGCTAGGTTGCGGA
AGAAATCTAACAAATTATAGCCTCCCCGTGTATCGCTTCCATGTTCTGGG
TTACCCGGAATGTTTTCCGCGTGTTTGACGTCCCCCCTGTGCGGCTGCGG
GCTTGGGAGTTTGTTTGCGTCTTCAGCTATCCGCTCGTTCTCCTCGATGA
TGTAATTCAGCCTCCTTTTCTCCCGTCTACTTCGTCTCCTTCGCTCTGAA
CCATGCCGCATACCCCGCACCCCCGTGTTCTCACTCCCCCCCCCCGCCCC
CCCTCCCCACCGATCTCGCCCGATTGTGTTTGCGTCGACCTTTTCGAACA
ACGAACCCTCACGGTAACGTGTGTGCGTTGACGCGGTGTCATCCTTTCGG
CATTGCGGCGGCGTGTGACCTATGCGGCCGATCAGCCTGGGAATATGCCT
GGAGACAGTGGGCCGTTTCGAGG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8733:3996..5768-

>mRNA_E_fasciculatus_S2_contig8733.16840.1 ID=mRNA_E_fasciculatus_S2_contig8733.16840.1|Name=mRNA_E_fasciculatus_S2_contig8733.16840.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=276bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8733:3996..5768- (Ectocarpus fasciculatus EfasUO2)
GGACCTGGACCCGAGCGACGTGGACATTCACATCAGCCTTGGCAATGTGC
TCAGACAGGACGGGGAATCGGCCGCGGCGATAGCGGCGTACGAGGAAGCT
ATGCATCTCGACAGCAACAACCGGATGGCGGCTTACAACCTGGGAGGAAT
CTTGCAGGACAACTTCGAGGAAGAGAAGGCGATCGAGTGCTTCAACCGCA
CCATCCAGATCGACCCGGATTATGCGGACGCTCACTACAACCTGGGAATA
TGCCTGGAGACAGTGGGCCGTTTCGA
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