mRNA_E_fasciculatus_S2_contig8731.16836.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8731.16836.1 vs.
Match: Helicase (C-terminal domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNZ7_9PHAE) HSP 1 Score: 227 bits (578), Expect = 1.260e-67 Identity = 119/126 (94.44%), Postives = 122/126 (96.83%), Query Frame = 1
Query: 13 RILRHLALKEQRVTPRQLVDAWRAKKGAKAMPDQVVGENDRPPKSLSRSACERLVLQLLGDGVLSDDFHFTAFSVVHYVVTGARAHALESGRLPQVSFQVRGSAASGAAGAVRKKPAGASSERLSK 390
RILRHLALKEQRVTPRQLVDAWRAKKGAKAMPD+VVGENDRPPK+LSRSACERLVLQLLGDGVLSDDFHFTAFSVVHYVVTGARAHALESGRL QVSFQVRGSA +GAAGAVRK PAGASSER SK
Sbjct: 235 RILRHLALKEQRVTPRQLVDAWRAKKGAKAMPDEVVGENDRPPKALSRSACERLVLQLLGDGVLSDDFHFTAFSVVHYVVTGARAHALESGRLSQVSFQVRGSAVAGAAGAVRKNPAGASSERPSK 360
BLAST of mRNA_E_fasciculatus_S2_contig8731.16836.1 vs.
Match: ATP-dependent (DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHZ5_ECTSI) HSP 1 Score: 209 bits (532), Expect = 2.190e-59 Identity = 113/127 (88.98%), Postives = 116/127 (91.34%), Query Frame = 1
Query: 13 RILRHLALKEQRVTPRQLVDAWRAKKGAKAMPDQVVGENDRPPKSLSRSACERLVLQLLGDGVLSDDFHFTAFSVVHYVVTGARAHALESGRLPQVSFQVRGSAASGAAGA----VRKKPAGASSER 381
RILRHLALKEQRVTPRQLVDAWRAKKGAKAMPD++VGENDRPPKSLSRSACERLVLQLLGDGVLSDDFHFTAFSVVHYVVTGARAHALESGRL QVSFQVRGSAA+ VRK PAGASSER
Sbjct: 410 RILRHLALKEQRVTPRQLVDAWRAKKGAKAMPDEIVGENDRPPKSLSRSACERLVLQLLGDGVLSDDFHFTAFSVVHYVVTGARAHALESGRLSQVSFQVRGSAAAXXXXXXXXXVRKTPAGASSER 536
BLAST of mRNA_E_fasciculatus_S2_contig8731.16836.1 vs.
Match: ATP-dependent (DNA helicase n=3 Tax=Pocilloporidae TaxID=46729 RepID=A0A2B4SSZ7_STYPI) HSP 1 Score: 68.2 bits (165), Expect = 2.760e-9 Identity = 37/91 (40.66%), Postives = 55/91 (60.44%), Query Frame = 1
Query: 13 RILRHLALKEQRVTPRQLVDAWRAKKGAKAMPDQVVGENDRPPKSLSRSACERLVLQLLGDGVLSDDFHFTAFSVVHYVVTGARAHALESG 285
+IL+ +RVTP +LVDAW K A +V + LSR CER+++ LL +GVL +DFHFT +S + YV+ G++A ++SG
Sbjct: 403 KILQQAVSLSERVTPVKLVDAWNGKGQASLRVREVKSPD------LSREDCERVIVHLLLEGVLREDFHFTPYSTISYVLPGSKARVVQSG 487
BLAST of mRNA_E_fasciculatus_S2_contig8731.16836.1 vs.
Match: ATP-dependent (DNA helicase n=2 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6TQQ1_POCDA) HSP 1 Score: 68.2 bits (165), Expect = 2.830e-9 Identity = 36/91 (39.56%), Postives = 55/91 (60.44%), Query Frame = 1
Query: 13 RILRHLALKEQRVTPRQLVDAWRAKKGAKAMPDQVVGENDRPPKSLSRSACERLVLQLLGDGVLSDDFHFTAFSVVHYVVTGARAHALESG 285
+IL+ +RVTP +LVDAW K A ++ + LSR CER+++ LL +GVL +DFHFT +S + YV+ G++A ++SG
Sbjct: 484 KILQQAVSLSERVTPVKLVDAWNGKGQASLRVREIKAPD------LSREDCERVIIHLLLEGVLREDFHFTPYSTISYVLPGSKARVVQSG 568
BLAST of mRNA_E_fasciculatus_S2_contig8731.16836.1 vs.
Match: ATP-dependent (DNA helicase Q1-like n=1 Tax=Pecten maximus TaxID=6579 RepID=UPI0014589BDE) HSP 1 Score: 66.2 bits (160), Expect = 1.330e-8 Identity = 35/90 (38.89%), Postives = 56/90 (62.22%), Query Frame = 1
Query: 16 ILRHLALKEQRVTPRQLVDAWRAKKGAKAMPDQVVGENDRPPKSLSRSACERLVLQLLGDGVLSDDFHFTAFSVVHYVVTGARAHALESG 285
+L H A +QRVT +L+DAW + GA ++ D P ++SR ER++ LL +G + +DFHFTA+S + Y+V G+++ L+SG
Sbjct: 489 LLDHAAQTQQRVTATKLMDAWEGR-GATSL-----RVRDVPEPNISRDKLERILAHLLLNGYIKEDFHFTAYSTISYIVAGSKSRLLQSG 572
BLAST of mRNA_E_fasciculatus_S2_contig8731.16836.1 vs.
Match: ATP-dependent (DNA helicase n=1 Tax=Dinothrombium tinctorium TaxID=1965070 RepID=A0A443QGJ1_9ACAR) HSP 1 Score: 65.9 bits (159), Expect = 1.660e-8 Identity = 36/98 (36.73%), Postives = 61/98 (62.24%), Query Frame = 1
Query: 13 RILRHLALKEQRVTPRQLVDAWRAKKGAKAMPDQVVGENDRPPKSLSRSACERLVLQLLGDGVLSDDFHFTAFSVVHYVVTGARAHALESGRLPQVSF 306
+I+ + A K++R+T +L++AW +KG D+ + D P SL+RS CE +++ LL D L +DFHFTA+S + Y+V+G +A + S + + F
Sbjct: 481 KIIENAAKKKERLTALKLIEAW-LQKG-----DKKLRIPDIEPPSLTRSQCELIIIYLLLDDYLKEDFHFTAYSTISYIVSGHKAALINSKKSIEYDF 572
BLAST of mRNA_E_fasciculatus_S2_contig8731.16836.1 vs.
Match: ATP-dependent (DNA helicase Q1 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A4FA7) HSP 1 Score: 64.3 bits (155), Expect = 5.570e-8 Identity = 35/91 (38.46%), Postives = 52/91 (57.14%), Query Frame = 1
Query: 13 RILRHLALKEQRVTPRQLVDAWRAKKGAKAMPDQVVGENDRPPKSLSRSACERLVLQLLGDGVLSDDFHFTAFSVVHYVVTGARAHALESG 285
+IL A +RVTP +L+DAW+ K + P +LS+ ACERL++ L+ GVL ++FHFT +S + Y+V G RA + G
Sbjct: 492 KILEQAASLGERVTPNKLLDAWKGKG------QTSLRVRSXTPPNLSQDACERLIVHLVFKGVLKEEFHFTPYSTICYLVKGTRAGMVMQG 576
BLAST of mRNA_E_fasciculatus_S2_contig8731.16836.1 vs.
Match: Hypothetical (protein n=1 Tax=Allacma fusca TaxID=39272 RepID=A0A8J2KXL4_9HEXA) HSP 1 Score: 62.0 bits (149), Expect = 3.360e-7 Identity = 40/116 (34.48%), Postives = 62/116 (53.45%), Query Frame = 1
Query: 16 ILRHLALKEQRVTPRQLVDAWRAKKGAKAMPDQVVGENDRPPKSLSRSACERLVLQLLGDGVLSDDFHFTAFSVVHYVVTGARAHALESGRLPQ-VSFQVRGSAASGAAGAVRKKP 360
IL H + E+R+T +L+DAW K K + V PK +R CE +V LL DG L ++FHFT +S + Y+V GA+ +G++ Q + +Q+ S + + KKP
Sbjct: 501 ILDHASHLEERMTALKLMDAWLGKGNKKLRVETVA-----TPK-FNRQTCETIVALLLIDGFLKEEFHFTPYSTISYIVAGAKVVLRSNGKISQDIQYQIPLSIVNPSKAKTSKKP 610
BLAST of mRNA_E_fasciculatus_S2_contig8731.16836.1 vs.
Match: ATP-dependent (DNA helicase n=2 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=A0A210PLF8_MIZYE) HSP 1 Score: 62.0 bits (149), Expect = 3.460e-7 Identity = 34/90 (37.78%), Postives = 55/90 (61.11%), Query Frame = 1
Query: 16 ILRHLALKEQRVTPRQLVDAWRAKKGAKAMPDQVVGENDRPPKSLSRSACERLVLQLLGDGVLSDDFHFTAFSVVHYVVTGARAHALESG 285
+L H A +QRVT +L+DAW KKG ++ + V P ++SR ER++ +L + + +D+HFTA+S + Y+V G ++ LESG
Sbjct: 489 LLDHAAQTQQRVTAAKLLDAWE-KKGPTSLRVRNV-----PEPNISRDKLERILAHMLLNSYVKEDYHFTAYSTISYIVAGPKSRLLESG 572
BLAST of mRNA_E_fasciculatus_S2_contig8731.16836.1 vs.
Match: LOW (QUALITY PROTEIN: ATP-dependent DNA helicase Q1-like n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF55622) HSP 1 Score: 62.0 bits (149), Expect = 3.630e-7 Identity = 37/98 (37.76%), Postives = 56/98 (57.14%), Query Frame = 1
Query: 16 ILRHLALKEQRVTPRQLVDAWRAKKGAKAMPDQVVGENDRPPKSLSRSACERLVLQLLGDGVLSDDFHFTAFSVVHYVVTGARAHALESGRLPQVSFQ 309
IL + +RVT +LVDAW KG + + V D LSR CER+++ +L +GVL +DFHFT FS + Y++ G +A + SG+ + F+
Sbjct: 811 ILERASSLSERVTANKLVDAW-CGKGQSNLRVRDVKTPD-----LSREDCERVIVDMLLEGVLREDFHFTPFSTISYLLPGPKAGLIHSGKRLYMDFR 902 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8731.16836.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig8731.16836.1 >prot_E_fasciculatus_S2_contig8731.16836.1 ID=prot_E_fasciculatus_S2_contig8731.16836.1|Name=mRNA_E_fasciculatus_S2_contig8731.16836.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=275bp MPSSRILRHLALKEQRVTPRQLVDAWRAKKGAKAMPDQVVGENDRPPKSLback to top mRNA from alignment at E_fasciculatus_S2_contig8731:5209..6389- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig8731.16836.1 ID=mRNA_E_fasciculatus_S2_contig8731.16836.1|Name=mRNA_E_fasciculatus_S2_contig8731.16836.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1181bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8731:5209..6389- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8731:5209..6389- >mRNA_E_fasciculatus_S2_contig8731.16836.1 ID=mRNA_E_fasciculatus_S2_contig8731.16836.1|Name=mRNA_E_fasciculatus_S2_contig8731.16836.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=825bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8731:5209..6389- (Ectocarpus fasciculatus EfasUO2)back to top |