mRNA_E_fasciculatus_S2_contig8728.16831.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8728.16831.1
Unique NamemRNA_E_fasciculatus_S2_contig8728.16831.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8728.16831.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH72_ECTSI)

HSP 1 Score: 519 bits (1337), Expect = 6.800e-173
Identity = 337/519 (64.93%), Postives = 385/519 (74.18%), Query Frame = 1 
Query:    1 STADVLASVG------GAAGSVSSVPAPDSPAPPPVTSPTTVGERPQIVPISERILAVANRMDRMAASLDSLAGGAGESPSVHHVREVTVGSGDLDESLVPGEATEAGTSGAHKERVVREEGGGLEVTRSSPMLEQVQRPRMDGNERPSDLVERTATPSAARVGSTTGSTADVLASAGSXXXXXXXXXXXXXVPAPDSPAPPPVTSPTTEGERPQIVPVSEQILAVANRMDRMAASLDSLAGDAEEAPSMQSGREVTIGSAVLDESLAPQDVTETLASRTDEAEGPPLSERILAMANRVSQIHIVPAPAAGDAGEMSSARSVREVTVGSGGLAVSLAPGEA-TEAVTRAAPKDMEVSDGEGSPATHGAASGETPVVEATMAPGGLVLEVDRGELGAIEGVSDETAGASTALVPGDGVGAARSPVSSAKTMDRTESPMAAAEKAEEGGIDPVVESGIAAVET-AVAPGALTTIKTRKVTSEERQMAGAPQGQIFDVVALKSSEVPASVDVSKDLE-VRIK 1530
            STA+VLAS G      G A SVS V APDSP P  V+     GER +I P S++ILA+ +RMDRM++ LD L  GAGE+PSVH +REVTVGSGDLDES VPGEATEA   GAH+ER VREE GGLEVTRSSPM E+VQRPRMD ++RPSDLVER  TPSAA VG TTGSTADVLASAGS             VPAPDSPAP PV S TTE ERPQI+P S+Q+LA+ANR+ R+ A     AGDA EA  + S R VT+GS VLD SLAPQD TETLAS  +EAE P + ER+LA+ NR+S+ + V A AAGDAGE SSARSV EVTVGSG LAVS APGE  TEAVTR APK ME  D  G   T    S ETPVVEAT+A GGLVLEV+  +L  +E ++ ETAG+S   VPG+G   AR PVS A+T +R E+P+AAAEK E     P  E+G+ AVET AV PG+LT IKTRKV+SEERQMAGAPQGQIFDVVALKSSEVPASVD+SKDLE VRI+
Sbjct:  235 STANVLASAGSVGAAAGGARSVSRVQAPDSPVPSSVSPSENEGERREINPTSQKILALGDRMDRMSSPLDLLVRGAGETPSVHSIREVTVGSGDLDESSVPGEATEAAIRGAHEEREVREERGGLEVTRSSPMREEVQRPRMDSDDRPSDLVERPTTPSAAGVGLTTGSTADVLASAGSVGVAAGGADSVSRVPAPDSPAPSPVASSTTEAERPQIIPTSQQLLALANRVSRLYALPAPAAGDAAEASGVPSSRGVTVGSGVLDVSLAPQDATETLASPPNEAERPKVFERVLALVNRLSKFNDVLATAAGDAGETSSARSVLEVTVGSGDLAVSRAPGEEKTEAVTRGAPKSMEGRDDRGVEVTS-QMSDETPVVEATVASGGLVLEVEGAQLEVVEEITGETAGSSRETVPGEGTRVARPPVSWAETAERVENPIAAAEKVEV----PAAENGVTAVETVAVTPGSLT-IKTRKVSSEERQMAGAPQGQIFDVVALKSSEVPASVDISKDLEAVRIR 747
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BLAST of mRNA_E_fasciculatus_S2_contig8728.16831.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWZ1_9PHAE)

HSP 1 Score: 231 bits (589), Expect = 8.740e-65
Identity = 156/256 (60.94%), Postives = 189/256 (73.83%), Query Frame = 1 
Query:  649 ILAVANRMDRMAASLDSLAGDAEEAPSMQSGREVTIGSAVLDESLAPQDVTETLASRTDEAEGPPLSERILAMANRVSQIHIVPAPAAGDAGEMSSARSVREVTVGSGGLAVSLAPGEATEAVTRAAPKDMEVSDGEGSPA---THGAASGETPVVEATMAPGGLVLEVDRGELGAIEGVSDETAGASTALVPGDGVGAARSPVSSAKTMDRTESPMAAAEKAEEGGIDPVVESGIAAVET-AVAPGALTTIKTRK 1404
            +LA+A+R+DR ++ L SLAG A E  S+ S R VT+GS VLD SLAPQD TETLAS T+EAE PP S +ILA+A+R+ ++H     AAGDAGE S ARSV EVTVGSG L VSL+PGEATEAVTR APK +E  D +G PA   TH    GETPVVEAT+A GGLVLEVD  +L  +E ++ ETAG+S   V  +G   AR PV+ A+T +R E+P+AAA+KAEEG I P VESG+AAVET AV PG LT IKTR+
Sbjct:  393 LLALADRLDRTSSLLGSLAGGAGETRSVPSSRGVTVGSGVLDVSLAPQDATETLASLTNEAEQPPASGQILAVADRLWKVHAALGGAAGDAGETSRARSVVEVTVGSGDLVVSLSPGEATEAVTRDAPKGVEGRD-DGGPAVEVTH-QVPGETPVVEATVASGGLVLEVDGAQLEMVEEITGETAGSSRETVTDEGERVARPPVAWAETAERAENPIAAADKAEEGSIIPAVESGVAAVETVAVTPGTLT-IKTRE 645
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BLAST of mRNA_E_fasciculatus_S2_contig8728.16831.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4X8_9PHAE)

HSP 1 Score: 161 bits (407), Expect = 1.450e-38
Identity = 93/139 (66.91%), Postives = 111/139 (79.86%), Query Frame = 1 
Query: 1084 ASGETPVVEATMAPGGLVLEVDRGELGAIEGVSDETAGASTALVPGDGVGAARSPVSSAKTMDRTESPMAAAEKAEEGGIDPVVESGIAAVETAVAPGALTTIKTRKVTSEERQMAGAPQGQIFDVVALKSSEVPASVD 1500
            ASGE PV+EAT+A GGLV+EVD   L A+E V+D++AG STA VPG G  +AR PVSS++  DR +SP+ AA+KAEEGG+ P + S +A VET VA     TIKTRKV+SEERQMAGAPQG+IFDVVALKSSEVPASVD
Sbjct:  568 ASGEVPVIEATVAKGGLVVEVDASRLQAMEEVADDSAGGSTATVPGAGAVSARLPVSSSEAADRADSPVVAAKKAEEGGLVPGLASRMAVVETVVAAPGTLTIKTRKVSSEERQMAGAPQGEIFDVVALKSSEVPASVD 706
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BLAST of mRNA_E_fasciculatus_S2_contig8728.16831.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7P4_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 4.190e-16
Identity = 54/64 (84.38%), Postives = 58/64 (90.62%), Query Frame = 1 
Query: 1345 IAAVET-AVAPGALTTIKTRKVTSEERQMAGAPQGQIFDVVALKSSEVPASVDVSKDLE-VRIK 1530
            +A VET A APGALT IKTRKV+SEERQMAGAPQG+IFDVVAL SSEVPASVDVSKDLE VRI+
Sbjct:    1 MAVVETVAAAPGALT-IKTRKVSSEERQMAGAPQGEIFDVVALTSSEVPASVDVSKDLEAVRIR 63
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BLAST of mRNA_E_fasciculatus_S2_contig8728.16831.1 vs.
Match: TOG (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Z1_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 1.480e-13
Identity = 72/167 (43.11%), Postives = 88/167 (52.69%), Query Frame = 1 
Query: 1036 DMEVSDGEGSPATHGA------ASGETPVVEATMAPGGLVLEVDRGELGAIEGVSDETAGASTALVPGDGVGAARSPVSSAKTMDRTESPMAAAEKAEEGGIDPVVESGIAAVETAVAPGALTTIKTRKVTSEERQMAGAPQGQIFDVVALKSSEVPASVDVSKDLE 1518
            + +VS G G+   H A      ASGE PV EAT A GGLV+EVD   L AIE VS E              GA +  +     +  +E P +         +   +E+     E     G     +  +V+SEERQMAGAPQG+IFDVVAL SSEVPASVDVSKDLE
Sbjct:  318 EADVSCGGGAGTEHEASGGLEKASGEVPVFEATAASGGLVVEVDGARLQAIEEVSSEER---------QMAGAPQGEIFDVVALTSSEVPASV-------DVSKDLEAVGGTDERLAVLG-----RDVQVSSEERQMAGAPQGEIFDVVALTSSEVPASVDVSKDLE 463
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8728.16831.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
Uncharacterized6.800e-17364.93protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized8.740e-6560.94protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 131... [more]
Uncharacterized1.450e-3866.91protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized4.190e-1684.38protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
TOG1.480e-1343.11domain-containing protein n=1 Tax=Ectocarpus silic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8728contigE_fasciculatus_S2_contig8728:77..2209 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start0
Model size1536
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_000190.1
Cds size1536
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842529.0753448-CDS-E_fasciculatus_S2_contig8728:76..2081696842529.0753448-CDS-E_fasciculatus_S2_contig8728:76..208Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8728 77..208 -
1696842529.0881996-CDS-E_fasciculatus_S2_contig8728:664..9851696842529.0881996-CDS-E_fasciculatus_S2_contig8728:664..985Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8728 665..985 -
1696842529.1026597-CDS-E_fasciculatus_S2_contig8728:1126..22091696842529.1026597-CDS-E_fasciculatus_S2_contig8728:1126..2209Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8728 1127..2209 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8728.16831.1prot_E_fasciculatus_S2_contig8728.16831.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8728 77..2209 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8728.16831.1

>prot_E_fasciculatus_S2_contig8728.16831.1 ID=prot_E_fasciculatus_S2_contig8728.16831.1|Name=mRNA_E_fasciculatus_S2_contig8728.16831.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=512bp
STADVLASVGGAAGSVSSVPAPDSPAPPPVTSPTTVGERPQIVPISERIL
AVANRMDRMAASLDSLAGGAGESPSVHHVREVTVGSGDLDESLVPGEATE
AGTSGAHKERVVREEGGGLEVTRSSPMLEQVQRPRMDGNERPSDLVERTA
TPSAARVGSTTGSTADVLASAGSVGAAAGGAGSVSSVPAPDSPAPPPVTS
PTTEGERPQIVPVSEQILAVANRMDRMAASLDSLAGDAEEAPSMQSGREV
TIGSAVLDESLAPQDVTETLASRTDEAEGPPLSERILAMANRVSQIHIVP
APAAGDAGEMSSARSVREVTVGSGGLAVSLAPGEATEAVTRAAPKDMEVS
DGEGSPATHGAASGETPVVEATMAPGGLVLEVDRGELGAIEGVSDETAGA
STALVPGDGVGAARSPVSSAKTMDRTESPMAAAEKAEEGGIDPVVESGIA
AVETAVAPGALTTIKTRKVTSEERQMAGAPQGQIFDVVALKSSEVPASVD
VSKDLEVRIKK*
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mRNA from alignment at E_fasciculatus_S2_contig8728:77..2209-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8728.16831.1 ID=mRNA_E_fasciculatus_S2_contig8728.16831.1|Name=mRNA_E_fasciculatus_S2_contig8728.16831.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2133bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8728:77..2209- (Ectocarpus fasciculatus EfasUO2)
TCCACCGCCGACGTGCTTGCTAGTGTTGGTGGTGCTGCCGGTTCGGTGTC
GAGCGTGCCAGCTCCGGACTCCCCGGCGCCACCACCAGTGACGTCGCCGA
CAACCGTGGGCGAACGGCCGCAGATCGTGCCAATATCCGAGCGGATCCTC
GCTGTGGCCAATCGGATGGATCGAATGGCCGCATCCTTAGACTCATTGGC
GGGAGGAGCAGGAGAGTCCCCGAGTGTGCACCACGTCCGTGAAGTCACCG
TCGGCTCGGGGGATCTCGACGAGTCACTGGTACCCGGGGAAGCGACGGAG
GCTGGGACTAGCGGCGCGCACAAGGAGAGGGTGGTGAGGGAAGAGGGGGG
TGGCTTGGAGGTGACAAGGAGCTCGCCGATGCTTGAACAGGTCCAACGGC
CAAGGATGGACGGCAATGAGCGGCCGAGTGATCTGGTAGAGAGAACGGCA
ACGCCATCAGCAGCAAGGGTTGGGTCGACGACGGGTTCCACGGCTGATGT
GCTCGCTAGTGCTGGTAGCGTTGGTGCTGCTGCCGGTGGAGCTGGTTCGG
TGTCGAGCGTGCCAGCTCCGGACTCCCCGGCGCCACCACCGGTGACGTCG
CCGACAACCGAGGGCGAACGGCCGCAGATCGTGCCAGTATCCGAGCAGAT
CCTCGCTGTGGCCAATCGGATGGATCGAATGGCCGCATCCTTAGACTCAT
TGGCGGGAGATGCGGAGGAGGCCCCGAGTATGCAGAGCGGCCGTGAGGTG
ACCATCGGCTCGGCCGTTCTCGACGAGTCGCTGGCACCCCAGGACGTGAC
GGAGACGTTGGCGTCGCGGACGGATGAGGCCGAAGGGCCTCCACTATCCG
AGCGGATCCTGGCGATGGCCAATCGGGTGTCGCAGATCCACATTGTCCCG
GCGCCAGCAGCGGGGGACGCAGGAGAGATGTCGAGTGCTCGGAGCGTCCG
TGAGGTCACCGTCGGCTCGGGGGGTCTCGCCGTGTCACTTGCACCCGGGG
AGGCGACGGAGGCTGTGACCAGAGCCGCCCCCAAGGACATGGAGGTGAGC
GATGGCGAGGGCTCGCCGGCAACACATGGTGCCGTGACGCCGGGCGAGCC
GATCACCAACTCCGAGGTTCTGATGACCGTGAAGATGCCCGAAGCGACGG
CGTTGGCGGCAGCCGACGCGTCCTTTGGAGGCGGCGCGGGGAAAGAACAA
GGGGCATCCCGTGGTGTGGAGAAGGCGTCTGGCGAGACCCCGGTGGTCGA
GGCGACGATGGCACCGGGAGGGCTCGTGCTGGAAGTCGACCGTGGTGAGT
TGGGCGCGATCGAGGGGGTCTCGGACGAAACCGCGGGAGCTTCGACGGCA
CTGGTGCCAGGGGACGGAGTAGGAGCGGCGAGGTCGCCGGTGTCGTCGGC
CAAGACTATGGATAGGACTGAGAGCCCGATGGCAGCAGCCGAGAAGGCGG
AGGAGGGGGGCATCGACCCGGTGGTGGAGAGCGGGATAGCAGCGGTGGAG
ACGGCAGTTGCACCCGGAGCTTTGACGACGATCAAGACGAGGAAGGTATG
CATCGCTGGGCTACGAGCGAGTGACCCGGAAGAGAATATTGTAGAGCGTG
CTAGTGGGTGCGTTGTTCAACCACCGGGTGTTGTACGGTATCACATACCG
GGTACCACGTGCGCTGCCTGGGCGATCGCTATCTGTTCGTTTGGGTAGAT
GTTTCGTGTTGCACACTCCCGACAGGAGCCCTAGTATGGTGGCTTGGGCT
ACCCCTCTCCACAAGACCCAAGGTCGTGTCGGTGCTTCGTGTGGATGCAC
TGCTTTAGCTATATCCAGTGCGGCGATACCGTACGTCTCGCGGTGAATGA
CTGTCTCGTACCCGCACCCCACGATGAAACTTCATCACCAGTCGGTGTTA
GTCACCCAAACCGGTGTCTTTCCTTAACCTTCGTTGCACCCGCTTCTCAC
ACGTCCCAATATATACCCTCTGCTCCCCTCAATCAATATCCCTTTGCCCA
GGTGACCTCGGAAGAGAGGCAGATGGCCGGAGCCCCCCAGGGGCAGATCT
TCGACGTGGTGGCGTTGAAGAGCAGCGAGGTGCCGGCATCGGTGGACGTG
TCGAAAGACCTCGAGGTGCGCATTAAAAAATAA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8728:77..2209-

>mRNA_E_fasciculatus_S2_contig8728.16831.1 ID=mRNA_E_fasciculatus_S2_contig8728.16831.1|Name=mRNA_E_fasciculatus_S2_contig8728.16831.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1536bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8728:77..2209- (Ectocarpus fasciculatus EfasUO2)
TCCACCGCCGACGTGCTTGCTAGTGTTGGTGGTGCTGCCGGTTCGGTGTC
GAGCGTGCCAGCTCCGGACTCCCCGGCGCCACCACCAGTGACGTCGCCGA
CAACCGTGGGCGAACGGCCGCAGATCGTGCCAATATCCGAGCGGATCCTC
GCTGTGGCCAATCGGATGGATCGAATGGCCGCATCCTTAGACTCATTGGC
GGGAGGAGCAGGAGAGTCCCCGAGTGTGCACCACGTCCGTGAAGTCACCG
TCGGCTCGGGGGATCTCGACGAGTCACTGGTACCCGGGGAAGCGACGGAG
GCTGGGACTAGCGGCGCGCACAAGGAGAGGGTGGTGAGGGAAGAGGGGGG
TGGCTTGGAGGTGACAAGGAGCTCGCCGATGCTTGAACAGGTCCAACGGC
CAAGGATGGACGGCAATGAGCGGCCGAGTGATCTGGTAGAGAGAACGGCA
ACGCCATCAGCAGCAAGGGTTGGGTCGACGACGGGTTCCACGGCTGATGT
GCTCGCTAGTGCTGGTAGCGTTGGTGCTGCTGCCGGTGGAGCTGGTTCGG
TGTCGAGCGTGCCAGCTCCGGACTCCCCGGCGCCACCACCGGTGACGTCG
CCGACAACCGAGGGCGAACGGCCGCAGATCGTGCCAGTATCCGAGCAGAT
CCTCGCTGTGGCCAATCGGATGGATCGAATGGCCGCATCCTTAGACTCAT
TGGCGGGAGATGCGGAGGAGGCCCCGAGTATGCAGAGCGGCCGTGAGGTG
ACCATCGGCTCGGCCGTTCTCGACGAGTCGCTGGCACCCCAGGACGTGAC
GGAGACGTTGGCGTCGCGGACGGATGAGGCCGAAGGGCCTCCACTATCCG
AGCGGATCCTGGCGATGGCCAATCGGGTGTCGCAGATCCACATTGTCCCG
GCGCCAGCAGCGGGGGACGCAGGAGAGATGTCGAGTGCTCGGAGCGTCCG
TGAGGTCACCGTCGGCTCGGGGGGTCTCGCCGTGTCACTTGCACCCGGGG
AGGCGACGGAGGCTGTGACCAGAGCCGCCCCCAAGGACATGGAGGTGAGC
GATGGCGAGGGCTCGCCGGCAACACATGGTGCCGCGTCTGGCGAGACCCC
GGTGGTCGAGGCGACGATGGCACCGGGAGGGCTCGTGCTGGAAGTCGACC
GTGGTGAGTTGGGCGCGATCGAGGGGGTCTCGGACGAAACCGCGGGAGCT
TCGACGGCACTGGTGCCAGGGGACGGAGTAGGAGCGGCGAGGTCGCCGGT
GTCGTCGGCCAAGACTATGGATAGGACTGAGAGCCCGATGGCAGCAGCCG
AGAAGGCGGAGGAGGGGGGCATCGACCCGGTGGTGGAGAGCGGGATAGCA
GCGGTGGAGACGGCAGTTGCACCCGGAGCTTTGACGACGATCAAGACGAG
GAAGGTGACCTCGGAAGAGAGGCAGATGGCCGGAGCCCCCCAGGGGCAGA
TCTTCGACGTGGTGGCGTTGAAGAGCAGCGAGGTGCCGGCATCGGTGGAC
GTGTCGAAAGACCTCGAGGTGCGCATTAAAAAATAA
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