mRNA_E_fasciculatus_S2_contig8726.16830.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8726.16830.1 vs.
Match: Allergen (V5/Tpx-1 related n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHC6_ECTSI) HSP 1 Score: 327 bits (838), Expect = 1.350e-96 Identity = 165/172 (95.93%), Postives = 169/172 (98.26%), Query Frame = 2
Query: 2 DLAETSRTGHSGSDGSGAADRMNRYGQFLQVAGEVCTYFDATAEGIVAQLLVSDGERSRHNRKALLAAHFKVCGIAIGTHPTVGAACVITLAGGYGPRPLARSADVVCEAGAAPSAEFREVLESIPVPQITEEVNKCVEVGMEVQLQYIPGSIKCIFVQASGARKSMGCQWA 517
DLAETSRTGHSGSDGSGAADRMNRYGQF QVAGEVCTYFDATAEGIVAQLLVSDGERSRHNRKALLAAHFKVCGIAIGTHPTVGAACVITLAGGYGPRPL+RSADVVCEAG+APSAEFREVLESIPVPQITEEV+KCVEVGMEVQLQY PGSIKC FVQASGARKSMGC+WA
Sbjct: 1042 DLAETSRTGHSGSDGSGAADRMNRYGQFFQVAGEVCTYFDATAEGIVAQLLVSDGERSRHNRKALLAAHFKVCGIAIGTHPTVGAACVITLAGGYGPRPLSRSADVVCEAGSAPSAEFREVLESIPVPQITEEVSKCVEVGMEVQLQYTPGSIKCTFVQASGARKSMGCKWA 1213
BLAST of mRNA_E_fasciculatus_S2_contig8726.16830.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD41_9STRA) HSP 1 Score: 176 bits (446), Expect = 1.690e-43 Identity = 94/195 (48.21%), Postives = 122/195 (62.56%), Query Frame = 2
Query: 2 DLAETSRTGHSGSDGSGAADRMNRYGQ-------FLQVAGEVCTYFDATAEGIVAQLLVSDGERSRHN-----------------RKALLAAHFKVCGIAIGTHPTVGAACVITLAGGYGPRPLARSADVVCEAGAAPSAEFREVLESIPVPQITEEVNKCVEVGMEVQLQYIPGSIKCIFVQASGARKSMGCQW 514
DL ET +T H+GSDGS ADR+NRYGQ F QVAGEV + ++++A GIV Q+L++DGER+R N RK+++ HFKVCG+A HP+VG V+TLAGG+GP+ L R A V E G PS EF VLESIPVPQ+T+EV K + G+ V+L Y PG +K Q G+ + CQW
Sbjct: 1256 DLGETGQTSHAGSDGSKTADRINRYGQASAAYSSFFQVAGEVISVYESSAVGIVCQMLINDGERTRQNEAKHEKIXXXXXXXXXXRKSIIGQHFKVCGVATAPHPSVGTVGVVTLAGGWGPKSLEREALVSVEPGEDPSPEFERVLESIPVPQVTDEVRKAIAAGLAVELDYKPGEVKLTVKQRDGSASLLSCQW 1450
BLAST of mRNA_E_fasciculatus_S2_contig8726.16830.1 vs.
Match: Hypothetical (protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SPY0_9STRA) HSP 1 Score: 147 bits (370), Expect = 8.970e-34 Identity = 81/177 (45.76%), Postives = 113/177 (63.84%), Query Frame = 2
Query: 2 DLAETSRTGHSGSDGSGAADRMNRYGQFLQVAGEVCTYFDATAEGIVAQLLVSDGERSRHNRKALLAAHFKVCGIAIGTHPTVGAACVITLAGGYGPRPLARSADVVCEAGAAPSAE----FREVLESIPVPQITEEVNKCVEVGMEVQLQYIPG-SIKCIFVQASGARKSMGCQWA 517
DLA TGH GSDGS ++ R+ RYG++ ++AGEV Y + +A V QL++ DGE+ RHNR A+L+ F+VCGIA HP++ + V+ LAGG+GP+PLA + V AA +AE F+ VL+SIPVPQ+ E+V +E G EV L Y PG + F Q SG ++ C W+
Sbjct: 843 DLATNDTTGHVGSDGSKSSARLRRYGEWHEIAGEVIAYREGSAAAFVEQLIICDGEQRRHNRTAVLSPEFRVCGIAASEHPSLESVVVVPLAGGFGPKPLAEA--TVASLSAASTAEEQETFQAVLDSIPVPQLHEQVAAALEDGAEVTLDYKPGGTATATFKQPSGEANAVACDWS 1017
BLAST of mRNA_E_fasciculatus_S2_contig8726.16830.1 vs.
Match: Hypothetical (protein n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SPP9_9STRA) HSP 1 Score: 125 bits (313), Expect = 1.890e-26 Identity = 71/171 (41.52%), Postives = 99/171 (57.89%), Query Frame = 2
Query: 2 DLAETSRTGHSGSDGSGAADRMNRYGQFLQVAGEVCTYFDATAEGIVAQLLVSDGERSRHNRKALLAAHFKVCGIAIGTHPTVGAACVITLAGGYGPRPLARSADVVCEAGAAPSAEFREVLESIPVPQITEEVNKCVEVGMEVQLQYIPGSIKCIFVQASGARKSMGCQW 514
DL T R GH+GSDGS A R+NR+G++ + A E ++ TA VAQ+++ DG SR R+ LL+ + G A+ HP GA C +TLAGGYGP PL + VV +A P +F EVL S+PV I + V + +E G +V L Y PG++K A+G + W
Sbjct: 1238 DLVRTKRLGHTGSDGSAPAQRLNRHGRWFERASECLSHGRRTAVAAVAQMIIDDGVASRAQRRGLLSDRARAVGCALRMHPRHGAVCCVTLAGGYGPPPLKEARKVVADAVNLPD-DFEEVLFSVPVVDIHDRVYQALERGGKVVLDYAPGALKLSVWDAAGKGEKFAVDW 1407
BLAST of mRNA_E_fasciculatus_S2_contig8726.16830.1 vs.
Match: Hypothetical (protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CHX3_9STRA) HSP 1 Score: 117 bits (293), Expect = 2.420e-26 Identity = 63/172 (36.63%), Postives = 100/172 (58.14%), Query Frame = 2
Query: 14 TSRTGHSGSDGSGAADRMNRYGQFLQVAGEVCTY--FDATAEGIVAQLLVSDGERSRHNRKALLAAHFKVCGIAIGTHPTVGAACVITLAGGYGP---RPLARSADVVCEAGAAPSAEFREVLESIPVPQITEEVNKCVEVGMEVQLQYIPGSIKCIFVQASGARKSMGCQW 514
T R H+G+DGS A+RM++YG + AGEV Y A+AE ++ ++VSDGE+SRH+R+A+L FKV GIA G HPT + V+ LAGG+G L A+ C S +F ++L+S+P+ + +++ + G + L++ PG + A GA++ +W
Sbjct: 56 TGRMAHTGADGSKPAERMSKYGSWQGTAGEVIGYSVHPASAEELILNIIVSDGEKSRHDRRAILNPKFKVAGIATGPHPTYSSTAVVCLAGGFGDFTLGDLGEEAEATCAGTEPMSPQFIQILDSVPIEDLVDQLKSELAAGSTLTLKFTPGCLHVNATDARGAKEEYDVEW 227
BLAST of mRNA_E_fasciculatus_S2_contig8726.16830.1 vs.
Match: Hypothetical (protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G3N3_9STRA) HSP 1 Score: 100 bits (250), Expect = 6.660e-19 Identity = 52/151 (34.44%), Postives = 78/151 (51.66%), Query Frame = 2
Query: 62 RMNRYGQFLQVAGEVCTYFDATAEGIVAQLLVSDGERSRHNRKALLAAHFKVCGIAIGTHPTVGAACVITLAGGYGPRPLARSADVVCEAGAAPSAEFREVLESIPVPQITEEVNKCVEVGMEVQLQYIPGSIKCIFVQASGARKSMGCQW 514
R YGQ+ + EV EGIVA+L + DG+++ + LL KVCG+ G HPT+ AC ++LAGG+GP+P+ + V C+ G+ P F EVL S+P P +E+ + G +V L Y P + + G +W
Sbjct: 416 RAEAYGQWKVLFSEVNCTHTRVPEGIVAELCLCDGDKTHRMLRDLLHPDLKVCGVGCGPHPTMEYACCVSLAGGWGPKPVDKRRIVFCKGGSEPDDRFMEVLNSVPEPDFIDELIDQISQGSDVHLNYTPSGVDAKITDSEGEVTEYNLEW 566
BLAST of mRNA_E_fasciculatus_S2_contig8726.16830.1 vs.
Match: CAP (domain-containing protein n=1 Tax=Anabaena sphaerica TaxID=212446 RepID=UPI001689BD5F) HSP 1 Score: 77.4 bits (189), Expect = 2.040e-12 Identity = 43/87 (49.43%), Postives = 53/87 (60.92%), Query Frame = 2
Query: 26 GHSGSDGSGAADRMNRYGQFLQVAGEVCTYFDATAEGIVAQLLVSDGERSRHNRKALLAAHFKVCGIAIGTHPTVGAACVITLAGGY 286
GH GSDGS R+NRYG++L AGE +Y + IV QL++ DG SR +R A+ FKV G+A GTH T CVIT A GY
Sbjct: 146 GHDGSDGSTPFTRINRYGRWLNTAGENISYGVNNGQDIVMQLIIDDGVPSRGHRTAIFNPAFKVAGVAYGTHKTYRNMCVITYAWGY 232
BLAST of mRNA_E_fasciculatus_S2_contig8726.16830.1 vs.
Match: Hypothetical (protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B9N3_9STRA) HSP 1 Score: 73.2 bits (178), Expect = 3.790e-12 Identity = 37/103 (35.92%), Postives = 55/103 (53.40%), Query Frame = 2
Query: 209 FKVCGIAIGTHPTVGAACVITLAGGYGPRPLARSADVVCEAGAAPSAEFREVLESIPVPQITEEVNKCVEVGMEVQLQYIPGS-IKCIFVQASGARKSMGCQW 514
F+V G+ G HPT+ AC +TLAGG+GP+P+ + V+C AG P F EVL S+P +E+ +E G V L Y P + ++ G+ +W
Sbjct: 5 FRVAGVGCGPHPTMTYACAVTLAGGFGPKPVDKRRIVMCAAGGEPDERFMEVLRSVPDDDFQQEILDQIEGGCSVHLSYDPNAGVEAKLTDEDGSVTEYNMEW 107
BLAST of mRNA_E_fasciculatus_S2_contig8726.16830.1 vs.
Match: CAP (domain-containing protein n=1 Tax=Candidatus Aminicenantes bacterium TaxID=2052149 RepID=A0A8I2K593_9BACT) HSP 1 Score: 66.6 bits (161), Expect = 4.930e-9 Identity = 37/87 (42.53%), Postives = 52/87 (59.77%), Query Frame = 2
Query: 26 GHSGSDGSGAADRMNRYGQFLQVAGEVCTYFDATAEGIVAQLLVSDGERSRHNRKALLAAHFKVCGIAIGTHPTVGAACVITLAGGY 286
GH+GSD S A RMNR+G + GEV Y + TA IV L++ DG + R++RK + F+V G++ G+H + CVI AG Y
Sbjct: 106 GHTGSDQSTPAARMNRFGTVKKAYGEVIEYGNWTARRIVMGLIIDDGVKDRNHRKNIFNPVFRVVGVSFGSHQSYTYMCVIDFAGVY 192
BLAST of mRNA_E_fasciculatus_S2_contig8726.16830.1 vs.
Match: CAP (domain-containing protein n=1 Tax=Ferrimonas balearica TaxID=44012 RepID=UPI001C99ECBD) HSP 1 Score: 64.7 bits (156), Expect = 3.330e-8 Identity = 36/89 (40.45%), Postives = 53/89 (59.55%), Query Frame = 2
Query: 8 AETSRTGHSGSDGSGAADRMNRYGQFLQVAGEVCTYFDAT---AEGIVAQLLVSDGERSRHNRKALLAAHFKVCGIAIGTHPTVGAACV 265
A+ +R GH G +GS ADR++RYGQ+ ++AGE Y DA +V L++ DG R +R+A++ ++ GI GTHP G CV
Sbjct: 119 AKQARIGHIGRNGSTPADRISRYGQWRELAGENLFYGDADRMIGRFVVMALIIDDGVPDRGHRQAIMEPRYRRVGIGFGTHPLYGYLCV 207 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8726.16830.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig8726.16830.1 >prot_E_fasciculatus_S2_contig8726.16830.1 ID=prot_E_fasciculatus_S2_contig8726.16830.1|Name=mRNA_E_fasciculatus_S2_contig8726.16830.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=152bp MNRYGQFLQVAGEVCTYFDATAEGIVAQLLVSDGERSRHNRKALLAAHFKback to top mRNA from alignment at E_fasciculatus_S2_contig8726:85..3105+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig8726.16830.1 ID=mRNA_E_fasciculatus_S2_contig8726.16830.1|Name=mRNA_E_fasciculatus_S2_contig8726.16830.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3021bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8726:85..3105+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8726:85..3105+ >mRNA_E_fasciculatus_S2_contig8726.16830.1 ID=mRNA_E_fasciculatus_S2_contig8726.16830.1|Name=mRNA_E_fasciculatus_S2_contig8726.16830.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=456bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8726:85..3105+ (Ectocarpus fasciculatus EfasUO2)back to top |