mRNA_E_fasciculatus_S2_contig8682.16792.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8682.16792.1
Unique NamemRNA_E_fasciculatus_S2_contig8682.16792.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8682.16792.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8682contigE_fasciculatus_S2_contig8682:447..1129 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size465
Hectar predicted targeting categorysignal anchor
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-08_003130.1
Cds size465
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842525.0838106-CDS-E_fasciculatus_S2_contig8682:446..7601696842525.0838106-CDS-E_fasciculatus_S2_contig8682:446..760Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8682 447..760 +
1696842525.095628-CDS-E_fasciculatus_S2_contig8682:978..11291696842525.095628-CDS-E_fasciculatus_S2_contig8682:978..1129Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8682 979..1129 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8682.16792.1prot_E_fasciculatus_S2_contig8682.16792.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8682 447..1129 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8682.16792.1

>prot_E_fasciculatus_S2_contig8682.16792.1 ID=prot_E_fasciculatus_S2_contig8682.16792.1|Name=mRNA_E_fasciculatus_S2_contig8682.16792.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=155bp
MVMVVVVVMVFVVVMVVVVFVVVMVVVVFVVSAHGPGRRRGHGVVVVVVV
GGCGRRGGGGVLKRAVGDLDHGRLVLGTRGADSVAQERGEAGRRREGRGW
GGWVGLHAPDVSPFLLIIFVLGAYEDGALPTKHRKSLCDLVADQTYFSLT
NKVL*
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mRNA from alignment at E_fasciculatus_S2_contig8682:447..1129+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8682.16792.1 ID=mRNA_E_fasciculatus_S2_contig8682.16792.1|Name=mRNA_E_fasciculatus_S2_contig8682.16792.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=683bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8682:447..1129+ (Ectocarpus fasciculatus EfasUO2)
ATGGTCATGGTCGTCGTGGTCGTCATGGTCTTCGTGGTCGTCATGGTCGT
CGTGGTCTTCGTGGTCGTCATGGTCGTCGTGGTCTTCGTCGTCTCCGCCC
ATGGCCCCGGCAGGCGTCGGGGACACGGAGTGGTCGTCGTCGTGGTCGTC
GGCGGCTGTGGGCGCCGGGGTGGTGGTGGTGTCTTGAAGCGAGCGGTGGG
AGACCTCGACCATGGCCGCCTTGTCCTCGGCACCCGCGGCGCCGACTCTG
TTGCTCAAGAGCGAGGGGAAGCGGGGAGGAGGCGAGAAGGGAGGGGATGG
GGCGGGTGGGTTGGGTGAGCGGAAGAACAATTTATGCGTTGTGTTGTCGA
AGGGTTGACGCACTGGAAACAACGCCGTCACTATTGTGGACCGGGTCATT
GGGGCTTTCACCGGAAGCGTTATTTTCTTCATACTACGCGGTACAGCAGT
CGGCAGCAGAGAATCCTTGCCCCGAGAGTGTTGTTGTGTTTTGTCACGAT
CCCGTCGCCTACTTGTTGTTTGCTTGCAACAGACTACATGCTCCGGACGT
TTCTCCGTTTCTCCTCATTATTTTCGTCTTAGGCGCTTATGAAGATGGGG
CTCTGCCGACAAAGCACCGCAAAAGCTTATGCGACCTCGTCGCCGACCAA
ACATACTTCTCCTTGACGAACAAAGTGCTTTAA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8682:447..1129+

>mRNA_E_fasciculatus_S2_contig8682.16792.1 ID=mRNA_E_fasciculatus_S2_contig8682.16792.1|Name=mRNA_E_fasciculatus_S2_contig8682.16792.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=465bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8682:447..1129+ (Ectocarpus fasciculatus EfasUO2)
ATGGTCATGGTCGTCGTGGTCGTCATGGTCTTCGTGGTCGTCATGGTCGT
CGTGGTCTTCGTGGTCGTCATGGTCGTCGTGGTCTTCGTCGTCTCCGCCC
ATGGCCCCGGCAGGCGTCGGGGACACGGAGTGGTCGTCGTCGTGGTCGTC
GGCGGCTGTGGGCGCCGGGGTGGTGGTGGTGTCTTGAAGCGAGCGGTGGG
AGACCTCGACCATGGCCGCCTTGTCCTCGGCACCCGCGGCGCCGACTCTG
TTGCTCAAGAGCGAGGGGAAGCGGGGAGGAGGCGAGAAGGGAGGGGATGG
GGCGGGTGGGTTGGACTACATGCTCCGGACGTTTCTCCGTTTCTCCTCAT
TATTTTCGTCTTAGGCGCTTATGAAGATGGGGCTCTGCCGACAAAGCACC
GCAAAAGCTTATGCGACCTCGTCGCCGACCAAACATACTTCTCCTTGACG
AACAAAGTGCTTTAA
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