mRNA_E_fasciculatus_S2_contig8671.16784.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8671.16784.1
Unique NamemRNA_E_fasciculatus_S2_contig8671.16784.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8671.16784.1 vs.
Match: PRA-CH (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2R7_9PHAE)

HSP 1 Score: 316 bits (810), Expect = 2.020e-96
Identity = 159/160 (99.38%), Postives = 159/160 (99.38%), Query Frame = 1
Query:    1 QELRGITVDCDSDAIKFTVWQHGSPPAFCHFNRRNCWEEERGLGHLERMLVKRKEQAPEGSYTKRLFEDPVLLRNKLVEEAQELAEAETKQHVAEEAADVTYFMMVRCAAAGVSWEDVEKELDKRSLKLKRRPGNAKAERIAEGDKILGAGRKAQVASLV 480
            QELRGITVDCDSDAIKFTVWQHGSPPAFCHFNRRNCWEEERGLGHLERMLVKRKEQAPEGSYTKRLFEDPVLLRNKLVEEAQELAEAETKQHVAEEAADVTYFMMVRCAAAGVSWEDVEKELDKRSLKLKRRPGNAKAERIAEGDKILGAGRK QVASLV
Sbjct:  284 QELRGITVDCDSDAIKFTVWQHGSPPAFCHFNRRNCWEEERGLGHLERMLVKRKEQAPEGSYTKRLFEDPVLLRNKLVEEAQELAEAETKQHVAEEAADVTYFMMVRCAAAGVSWEDVEKELDKRSLKLKRRPGNAKAERIAEGDKILGAGRKTQVASLV 443          
BLAST of mRNA_E_fasciculatus_S2_contig8671.16784.1 vs.
Match: Phosphoribosyl-AMP (cyclohydrolase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDR4_ECTSI)

HSP 1 Score: 254 bits (648), Expect = 1.340e-72
Identity = 133/160 (83.12%), Postives = 133/160 (83.12%), Query Frame = 1
Query:    1 QELRGITVDCDSDAIKFTVWQHGSPPAFCHFNRRNCWEEERGLGHLERMLVKRKEQAPEGSYTKRLFEDPVLLRNKLVEEAQELAEAETKQHVAEEAADVTYFMMVRCAAAGVSWEDVEKELDKRSLKLKRRPGNAKAERIAEGDKILGAGRKAQVASLV 480
            QELRGITVDCDSDAIKFTVWQHGSPPAFCHFNRRNCWEEERGLGHLERMLVKRK                          AQELAEAETKQHVAEEAADVTYFMMVRCAAAGVSWEDVEKELDKRSLKLKRRPGNAKAERIAEGDKILGAGRK QVASLV
Sbjct:  328 QELRGITVDCDSDAIKFTVWQHGSPPAFCHFNRRNCWEEERGLGHLERMLVKRK--------------------------AQELAEAETKQHVAEEAADVTYFMMVRCAAAGVSWEDVEKELDKRSLKLKRRPGNAKAERIAEGDKILGAGRKTQVASLV 461          
BLAST of mRNA_E_fasciculatus_S2_contig8671.16784.1 vs.
Match: Hypothetical (protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YIB2_HETAK)

HSP 1 Score: 195 bits (496), Expect = 8.270e-55
Identity = 98/145 (67.59%), Postives = 113/145 (77.93%), Query Frame = 1
Query:   13 GITVDCDSDAIKFTVWQHGSPPAFCHFNRRNCWEEERGLGHLERMLVKRKEQAPEGSYTKRLFEDPVLLRNKLVEEAQELAEAETKQHVAEEAADVTYFMMVRCAAAGVSWEDVEKELDKRSLKLKRRPGNAKAERIAEGDKILG 447
            GI +DCDSDA+ FTV QHG P AFCH NRR+CW  +RGLG LER L  R   AP GSYTKRLF+DP LLRNKL+EEAQEL EAET +HVA EAAD+ YF+M RCAAAGV    +EK+LD +S KLKRRPGNAKA RIA  + ++G
Sbjct:    1 GIGLDCDSDALCFTVAQHGDPAAFCHLNRRDCWTGDRGLGKLERTLAARLRSAPAGSYTKRLFDDPALLRNKLLEEAQELVEAETPEHVASEAADLLYFLMARCAAAGVGVGAIEKDLDLKSRKLKRRPGNAKAHRIAAAEAVVG 145          
BLAST of mRNA_E_fasciculatus_S2_contig8671.16784.1 vs.
Match: Hypothetical (protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4U4_9STRA)

HSP 1 Score: 197 bits (502), Expect = 3.590e-52
Identity = 98/149 (65.77%), Postives = 115/149 (77.18%), Query Frame = 1
Query:    1 QELRGITVDCDSDAIKFTVWQHGSPPAFCHFNRRNCWEEERGLGHLERMLVKRKEQAPEGSYTKRLFEDPVLLRNKLVEEAQELAEAETKQHVAEEAADVTYFMMVRCAAAGVSWEDVEKELDKRSLKLKRRPGNAKAERIAEGDKILG 447
            QEL+GI++DCDSDA+ F V Q G PPAFCH NRR CW+  RG+G LER L +R   AP GSYTKRLF+DP LLRNKL+EE QEL EAET   VA EAADV YFMMVRC AAGV   D+E++LD +SLK+KRRPGNAK  RI   +K++G
Sbjct:  286 QELKGISIDCDSDALCFRVDQKGDPPAFCHLNRRTCWDAGRGIGKLERTLTQRLANAPAGSYTKRLFDDPALLRNKLLEEVQELVEAETVGDVAAEAADVMYFMMVRCVAAGVKLADIERDLDAKSLKVKRRPGNAKRHRIEAAEKVVG 434          
BLAST of mRNA_E_fasciculatus_S2_contig8671.16784.1 vs.
Match: PRA-CH (domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D8I2_9STRA)

HSP 1 Score: 194 bits (494), Expect = 6.830e-51
Identity = 99/150 (66.00%), Postives = 119/150 (79.33%), Query Frame = 1
Query:    1 QELRGITVDCDSDAIKFTVWQHGSPPAFCHFNRRNCWEEERGLGHLERMLVKRKEQAPEGSYTKRLFEDPVLLRNKLVEEAQELAEAETKQHVAEEAADVTYFMMVRCAAAGVSWEDVEKELDKRSLKLKRRPGNAKAERIAEGDKILGA 450
            QEL G+ VDCDSDA++F V Q G PPAFCH NRR+CW+E+RGLG L+R L  R  QA EGSYT++LF DP LLR+KLVEEAQEL+EA+  + VA EAADV YF MVRC AAGV+ ED+E+ LD R+LKL+RRPGNAKA RI   +KIL +
Sbjct:  300 QELVGLDVDCDSDALRFVVRQRGKPPAFCHLNRRSCWQEDRGLGALQRTLEDRLHQAVEGSYTQKLFRDPDLLRHKLVEEAQELSEAKECEDVAAEAADVFYFAMVRCVAAGVTLEDIERHLDARTLKLQRRPGNAKAHRIDAAEKILSS 449          
BLAST of mRNA_E_fasciculatus_S2_contig8671.16784.1 vs.
Match: PRA-CH (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKL0_9STRA)

HSP 1 Score: 192 bits (487), Expect = 1.000e-49
Identity = 100/150 (66.67%), Postives = 113/150 (75.33%), Query Frame = 1
Query:    1 QELRGITVDCDSDAIKFTVWQHGSPPAFCHFNRRNCWEEERGLGHLERMLVKRKEQAPEGSYTKRLFEDPVLLRNKLVEEAQELAEAETKQHVAEEAADVTYFMMVRCAAAGVSWEDVEKELDKRSLKLKRRPGNAKAERIAEGDKILGA 450
            Q L  +++DCDSDA++F V QHG+PPAFCHFNRR CW  E GLG LER L  R+  AP GSYT RLF D  LLRNKLVEEAQELAEA+    VA EAADV YF +VRCAAAGV   +V   LD+R+LKL+RRPGNAKA RIA GD IL A
Sbjct:  312 QALLALSMDCDSDALRFLVVQHGAPPAFCHFNRRACWAGEGGLGALERTLAARRASAPAGSYTARLFSDAALLRNKLVEEAQELAEAQAPDDVASEAADVLYFALVRCAAAGVGLREVGDWLDRRALKLRRRPGNAKAHRIAAGDAILKA 461          
BLAST of mRNA_E_fasciculatus_S2_contig8671.16784.1 vs.
Match: Hypothetical (protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WIY7_9STRA)

HSP 1 Score: 186 bits (472), Expect = 4.020e-48
Identity = 97/148 (65.54%), Postives = 112/148 (75.68%), Query Frame = 1
Query:    1 QELRGITVDCDSDAIKFTVWQHGSPPAFCHFNRRNCWEEERGLGHLERMLVKRKEQAPEGSYTKRLFEDPVLLRNKLVEEAQELAEAETKQHVAEEAADVTYFMMVRCAAAGVSWEDVEKELDKRSLKLKRRPGNAKAERIAEGDKIL 444
            Q+L  I  DCDSDA++FTV QHGSPPAFCH N R CW    GL  LE+ L +R+  AP GSYTKRLFEDP LLRNKL+EEAQEL EAE   HVA EAADV YF +VRCAAAGV+   +E  L++R+LKLKRRPGNAKA RIA  ++ L
Sbjct:  274 QDLFLIQADCDSDALRFTVHQHGSPPAFCHRNCRTCWGPHGGLTELEQTLAERRASAPAGSYTKRLFEDPELLRNKLLEEAQELIEAEEPDHVAAEAADVMYFALVRCAAAGVTIPQIEAHLNRRALKLKRRPGNAKAYRIAAAEEAL 421          
BLAST of mRNA_E_fasciculatus_S2_contig8671.16784.1 vs.
Match: PRA-CH (domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X3I1_GLOUD)

HSP 1 Score: 184 bits (466), Expect = 7.730e-47
Identity = 99/148 (66.89%), Postives = 113/148 (76.35%), Query Frame = 1
Query:    1 QELRGITVDCDSDAIKFTVWQHGSPPAFCHFNRRNCWEEERGLGHLERMLVKRKEQAPEGSYTKRLFEDPVLLRNKLVEEAQELAEAETKQHVAEEAADVTYFMMVRCAAAGVSWEDVEKELDKRSLKLKRRPGNAKAERIAEGDKIL 444
            Q L  + VDCDSDA++FTV Q G+   FCH N R CW E RGL HL++MLV R + APEGSYTKRLF DPVLLRNKLVEEAQELAEAET   VA EAADV YF + RC AAG + +DVEK LDKR+LK+KRRPGN+KA RI    +IL
Sbjct:  328 QALVQLDVDCDSDALRFTVEQTGA--GFCHLNTRTCWGEARGLQHLQQMLVSRLQDAPEGSYTKRLFNDPVLLRNKLVEEAQELAEAETISDVAGEAADVMYFAITRCVAAGATLKDVEKYLDKRALKVKRRPGNSKAYRIEAAAEIL 473          
BLAST of mRNA_E_fasciculatus_S2_contig8671.16784.1 vs.
Match: Probable (phosphoribosyl-amp cyclohydrolase n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BUA9_THAPS)

HSP 1 Score: 177 bits (448), Expect = 1.510e-46
Identity = 95/150 (63.33%), Postives = 111/150 (74.00%), Query Frame = 1
Query:    1 QELRGITVDCDSDAIKFTVWQHGSP-PAFCHFNRRNCWEEERGLGHLERMLVKRKEQAPEGSYTKRLFEDPVLLRNKLVEEAQELAEAETKQHVAEEAADVTYFMMVRCAAAGVSWEDVEKELDKRSLKLKRRPGNAKAERIAEGDKILG 447
            Q L  + VDCD DA++FTV Q G    AFCH N   CW E RGL HLE  L +R + AP GSYTKRLFED +LLR+KLVEEAQEL+EA+TKQHVAEE ADV YF MVR A AGVS +D  +ELD+R+ K+ RR G++K ERI  GDKILG
Sbjct:  120 QTLHRLDVDCDGDALRFTVTQRGDDIRAFCHLNTLTCWGEPRGLRHLEGTLQQRLKDAPVGSYTKRLFEDEILLRDKLVEEAQELSEADTKQHVAEELADVLYFAMVRAAKAGVSIDDAVEELDRRTRKVTRRQGDSKVERIKAGDKILG 269          
BLAST of mRNA_E_fasciculatus_S2_contig8671.16784.1 vs.
Match: Hypothetical (protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WE40_9STRA)

HSP 1 Score: 176 bits (445), Expect = 5.360e-46
Identity = 98/152 (64.47%), Postives = 111/152 (73.03%), Query Frame = 1
Query:    1 QELRGITVDCDSDAIKFTVWQHGSP-PAFCHFNRRNCWEEERGLGHLERMLVKRKEQAPEGSYTKRLFEDPVLLRNKLVEEAQELAEAETKQHVAEEAADVTYFMMVRCAAAGVSWEDVEKELDKRSLKLKRRPGNAKAERIAEGDKILGAG 453
            Q L  I VDCDSDA++FTV Q G    AFCH N   CW E  GL HLE  L +R + APEGSYTKRLF+D  LLR+KLVEEAQEL+EAE+KQHVAEE ADV YF MVR A AGVS +D   ELDKR+ K+ RR G++KA RIA GD ILG G
Sbjct:  128 QVLHRIDVDCDSDALRFTVTQRGDDVAAFCHLNTFTCWGEPCGLRHLEATLKQRLKSAPEGSYTKRLFDDEQLLRDKLVEEAQELSEAESKQHVAEELADVIYFAMVRAAKAGVSIDDAAVELDKRARKVTRRKGDSKAFRIAAGDAILGKG 279          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8671.16784.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
PRA-CH2.020e-9699.38domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Phosphoribosyl-AMP1.340e-7283.13cyclohydrolase n=1 Tax=Ectocarpus siliculosus TaxI... [more]
Hypothetical8.270e-5567.59protein n=1 Tax=Heterosigma akashiwo TaxID=2829 Re... [more]
Hypothetical3.590e-5265.77protein n=1 Tax=Fibrocapsa japonica TaxID=94617 Re... [more]
PRA-CH6.830e-5166.00domain-containing protein n=1 Tax=Nannochloropsis ... [more]
PRA-CH1.000e-4966.67domain-containing protein n=1 Tax=Tribonema minus ... [more]
Hypothetical4.020e-4865.54protein n=1 Tax=Rhizochromulina marina TaxID=10348... [more]
PRA-CH7.730e-4766.89domain-containing protein n=1 Tax=Globisporangium ... [more]
Probable1.510e-4663.33phosphoribosyl-amp cyclohydrolase n=1 Tax=Thalassi... [more]
Hypothetical5.360e-4664.47protein n=1 Tax=Pseudictyota dubia TaxID=2749911 R... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8671contigE_fasciculatus_S2_contig8671:629..6449 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score150.2
Seed ortholog evalue5.7e-34
Seed eggNOG ortholog2880.D8LDR4
Preferred nameHIS4
Model size2359
KEGG rclassRC00002,RC00099,RC00242,RC00463,RC01055
KEGG koko:K11755,ko:K14152
KEGG ReactionR01158,R01163,R03012,R04035,R04037
KEGG Pathwayko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230
KEGG ModuleM00026
Hectar predicted targeting categoryother localisation
GOsGO:0000105,GO:0003674,GO:0003824,GO:0004399,GO:0004635,GO:0004636,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016462,GO:0016491,GO:0016614,GO:0016616,GO:0016787,GO:0016810,GO:0016814,GO:0016817,GO:0016818,GO:0018130,GO:0019238,GO:0019438,GO:0019752,GO:0030145,GO:0034641,GO:0043167,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046872,GO:0046914,GO:0052803,GO:0055114,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
Exons6
EggNOG free text desc.phosphoribosyl-ATP diphosphatase activity
EggNOG OGsCOG0139@1,KOG4311@2759
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-19_001685.1
EC1.1.1.23,3.5.4.19,3.6.1.31
Cds size339
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8671.16784.1prot_E_fasciculatus_S2_contig8671.16784.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8671 1099..4573 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842524.3375683-UTR-E_fasciculatus_S2_contig8671:628..7261696842524.3375683-UTR-E_fasciculatus_S2_contig8671:628..726Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8671 629..726 +
1696842524.3497345-UTR-E_fasciculatus_S2_contig8671:1052..10981696842524.3497345-UTR-E_fasciculatus_S2_contig8671:1052..1098Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8671 1053..1098 +
1696842524.4189525-UTR-E_fasciculatus_S2_contig8671:4573..64491696842524.4189525-UTR-E_fasciculatus_S2_contig8671:4573..6449Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8671 4574..6449 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842524.3624864-CDS-E_fasciculatus_S2_contig8671:1098..11161696842524.3624864-CDS-E_fasciculatus_S2_contig8671:1098..1116Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8671 1099..1116 +
1696842524.3767738-CDS-E_fasciculatus_S2_contig8671:1774..18521696842524.3767738-CDS-E_fasciculatus_S2_contig8671:1774..1852Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8671 1775..1852 +
1696842524.3878124-CDS-E_fasciculatus_S2_contig8671:2579..26511696842524.3878124-CDS-E_fasciculatus_S2_contig8671:2579..2651Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8671 2580..2651 +
1696842524.3988738-CDS-E_fasciculatus_S2_contig8671:3709..37971696842524.3988738-CDS-E_fasciculatus_S2_contig8671:3709..3797Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8671 3710..3797 +
1696842524.4091806-CDS-E_fasciculatus_S2_contig8671:4490..45731696842524.4091806-CDS-E_fasciculatus_S2_contig8671:4490..4573Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8671 4491..4573 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8671.16784.1

>prot_E_fasciculatus_S2_contig8671.16784.1 ID=prot_E_fasciculatus_S2_contig8671.16784.1|Name=mRNA_E_fasciculatus_S2_contig8671.16784.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=113bp
MLVKRKEQAPEGSYTKRLFEDPVLLRNKLVEEAQELAEAETKQHVAEEAA
DVTYFMMVRCAAAGVSWEDVEKELDKRSLKLKRRPGNAKAERIAEGDKIL
GAGRKAQVASLV*
back to top

mRNA from alignment at E_fasciculatus_S2_contig8671:629..6449+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8671.16784.1 ID=mRNA_E_fasciculatus_S2_contig8671.16784.1|Name=mRNA_E_fasciculatus_S2_contig8671.16784.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=5821bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8671:629..6449+ (Ectocarpus fasciculatus EfasUO2)
CAGGAGCTGCGAGGCATCACGGTGGACTGCGATAGCGACGCGATCAAGTT CACGGTGTGGCAGCATGGTAGCCCGCCCGCCTTCTGCCATTTCAACAGGT TAGTGGGCACGCTTTCGGGAGGTTGTGGTTCCCATGTTGCCGCTGCTACT GCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGC TGCTACTGTGTTGGTGTTGTGTGTTTTTTGGTCACCCGGTTCTCAGTTGT CCTTCCTTTTCTGCGACGCAACACTGTTCGTACTTGCTTCTTGACTCCGA GACGTAAAAAATGTCTCTGTTTCGTCTTGCCTATTTCCCTGTCTCTCTCT CTCTACATATAGTTTTTATATCGCTCTCGCTCTCGCTCCCGCCGCCTTGG CTCCACGTGTATTGGCTTGGGCAGGCGTAATTGCTGGGAAGAAGAGCGGG GCCTGGGACACCTTGAAAGAATGCTCGTCAAGCGAAAAGTGAGCTGAATC GCCCGCCTGGTTTCCTCTACCCACGCGTGGCTTATAACCTGTGAATATAA AAAATTGTCGGCCCTCCTAAGCGTGAAATCGGTGGCGGCTGGTCACCGGC CAAATCCATGGGCAGTAGGTCGATACCACTCCGACAACGCCTACCTGTTC AGTACGTACGTAAAAGTTTAAAACAGCACCTACCTATTGTCTCTTCTCTA GCCGACGTGCAATGCTCAAGATGTTTGCCGTAGGAGAGCGCAGGTACAAA AAGGCAGCCGGTCCTGTCAGAGAGTGGGAACCCCACCCCCTCCCCGCCCT CTCTTCAGTCTCTTTGCTACTCTACAAATACCTCTGCCGTCCTCTCTCTT CCAATATCTGCCTCGCTCTCTCTTTTCTCCCTCTCACTCCCCCCCTCTCT CTTGCCTACTATATACGTATCTCTCGGCCTTCCTCTCTCTTATCTCTCTG CCTCGCTCTCTCTAACCCCCTCTCTCTTGCCTACTATATACGTATCTCTC GGCCTTCCTCTCTCTGCCTCTCTCTGCCTTGCCTTCTCTTTTCTCCGCCT AACCCCCACCCTTCTCTTTTCTCCGCCTAACCCCCACCCTTCTCTTTTCT CCGCCTAACCCCCACCCGACCCCCCTTTGCGCGGGGTCACTGGCAGGAGC AAGCGCCGGAGGGTTCCTACACCAAGAGGCTTTTCGAGGACCCGGTTCTC TTGAGGAACAAGCTCGTCGAAGAGGTAAGCGTTTTCTTTTCTTCTGGTTC GGATTTTTCTTTTCTTTTTTTTTTTCTTTCTTTTTTTCTTTCTTTCTTTC TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT TCTTTCTTTCTTTCTTTCTTTTTCTTTCTTTTTCTTTCTTTCTTTCTTTC TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT TCTTTCTTTCTTTTCTTCTTTTCTCGTCTAGGGGGTCCGGTCCGGCAAAA TGGGTAAACCAATAAAGCTACCAGCTCAGGCCTACACAACTTGTTCTGGT GGGACCTCTGCGTTGGCTTCTAGATGTGTAGTTGGCCTGTGACCATGGAA GCCATCCGCGTCTCTAGACCGGTACAGATGTTGGACGGGGAGACCGAATC GGTTTTCGATGCGAAGACAACAACATTAGCCCCAACACAAGCCTGCAGCC CGATTTTCCAATTTGGACCCCGGCGACAGCGGGGCACGGAACCAACTCGC CGTATAGCTCCTTTGCAAACCACGGTCCCACTTGGTTACATATGGTAGCT AGACCTAAGAGGTGCCCTGCTGCGAAACGTCGTCGTACCCCCCCTTTCTC CTTTCATCATATCCCCCCCCCTGCCCTTCTGCTTTCGGCTCGCCGGCGGC CTTTGTTTGTGTGGTTGTTGTTGATGCGGTCCGCTAATAATGTTTACATA GGCGCAAGAACTTGCCGAGGCGGAAACCAAACAGCACGTCGCGGAGGAAG CTGCGGACGTGACCTACTTCATGGTGAGCGCCGGTCGAAGTGTTGCGTGT GGCGCTATACTTGGTGACAGGCACTGACAATGTCGTGTGTATCTCTCCTC TCTCTTTCCTCCGGGCGTCGACTCTCTCTCCTGCGGTGTAGGGACTAATC TTTCGGTGCGCAGTAGTCTCAGGTGACCAAGTCCCCAAAACGGAACCCTA CCATTTTCTTCGCCGACTTCGAGGTCATCATGCTACTACTCGTTCAGTGA TGTCGGTCTCCTCTTACGGCTACCCCACACCATGCCTTCTCCTGGTTGCC GCCGGACTCCCTTACCCTTGCCTCCAAGTGTACGCGATATGCTTCGCGAG TCTTTCATGTCGTTTGCTGCTGTTTATTTACGACTTGCACGCACCTGACG CAACCTTCCTGCTCTCTGGAGTACTCGTTCCGAACAAGCGACAGCTGTCA GGCGCGAACGATCGGGACGCCTTGAATTGTCGTCTCCCACACAGGACACT CTCCAACTCGACGACTAGAGTACCATCTTGTCTACATGCGTCTTCACCCA AAGCTTGCCACGCAAGCCTCCCGCCGCCAGAACGCGGGAGGAAAGCGAGT CATGTTATCTAAGGGCACTTCGCCCACCCTCTCTGGCCGGCTCTACGAGT ACATGATTCGTGGCCTCGCGTCCTTCGGTTGGCACTTTTTCGCAGATGCA CTCCTCGTTTTTTGTGTGACCCCGGTTGAGCGGCAAACACATCCACAAAG AGACTATTTATAACACAAAAAGACCAAGGGACATGACGTGTAGACTGGCG TCAGACTAAATGAATGAATGAATGAATGAAATGGCCCAGCAACACTTGGT ATTGGTCAACGTCTCTTTTTTGTTGTTCTCTTCCGAATATTACCCTCCCC AAAACCAAAAAATAAATATTTACCACATAAATACAATCCCAAACCCAAAT ACAATCCCTAGACCAAAAACAAAAACAAAAACAACTAATTAAATGAGACA CCCCCCATAGACTAATATATTCATTAATTATCCCTTTTGTCCCTTCGTCG CACGGACGACCCAAACGCCGACCGGTTGAAGATGGTGCGGTGCGCAGCGG CTGGCGTTAGCTGGGAGGACGTGGAGAAGGAGCTTGACAAGCGCTCGCTC AAGCTCAAGCGCCGCCCAGGTATTTGGTTTGTCTGTCTTTTCGTTTGCGT TCATGGCTTTTTTGCGTGTCGGTCGCTGTTCATCCAGTATTGTTGCCGTT TCCACACGGCAACATATGTAAATTAATGTGTGTGATCGCTGCTACGTAGT GATGAACGAATGAGAAAAAACATTGTTGAAGAATGAGCTATGCTATGTAT GTAATGTGTTGGTGTTGGTATTCAATTCGCTTGTATGTTTAATGTTTGGT TTTGTTGGGAAGGACATGTACAGCAGTGTTTCCTCACTCGCGGCCCTTCT ATCCCTAGGACACGGTAGTATTGAAGTGTCCAGAACGCTCCACCCTCTGA AGAACAACCTCTCAGTTCGCCCGAGGTGAGGCTCGTTTCTTCTACTTTTC TGAGGGATGTAACCCAAGAGCGACCATATACCCCTGAAGCAAGGGGCAGG ATTCCTCATTGAGCACCTGTTCTTACGGTCAGGTTCTTGAAGTATATAGA AGTACAGAATCACCAGTGCCTGTTTCACCAATACTCCCGCCTGCTTCTGC TCACTTGTGGTGAACGCCATATATTGCGCGACTAGCTCGCTCTTCACCGG GTTACCAACCCGCATGGTCTTACTCCACGGTGTCACCACTCCCATTTCCT TCTTTGTTAAAGCCTGAAGTTCTCAACCCCCCCCCACCCCATGCTTGCTC GCCGGAAACCAGGAAACGCGAAAGCAGAGCGCATCGCGGAGGGGGACAAG ATTCTTGGTGCGGGCCGCAAAGCTCAAGTGGCGAGCCTAGTCTGATGCGA TTTGGGAATGGTTTGGTTGACATCTTTTCAGTGGTTCAAAGGGGGCTGCT TTTGCCCTTGGAACAGAAACAGGATGCATGGAGACCCCGCTCGTACGGGT GGTTGTTCATGCCGTGCGTGTGACGGTGGGCAGGGCTTGGTATCCTCCGC ATGGAGGCAGGCGCACACGTGACGCATACAGTACCACGCAGCGACCGCGC ACGTTTGGTAGCGATACTTTGTGAATCCCGTCCCGTGTTGGCGGTGCGTG AAGAGAGCGTATGTGTATGGACCAGGTCATCATGCGATCAACGAGGAGAA ACGGCAGCGAGATGGGCGTCTTGTGGAGGGTGTTTTCCCGTCCGGGAGAT GAATACGCAGGAGGATATGATAACGGCCTCAGCGTAGGCCAAGCCGCCGC TTTTGTGTCGAGGGATCGCCACCCCTCCCACCACCAGAGAGGGACGCCGA AACACGTCCGTAGTACACGGTCGTGCGCGTGTCTCGAATGGGCATAGGCC GCGCACGACTTGACTTATTGTGATTTCACCCTGTGACAGCACTTGTATCA GTGGAGTTTTGAGAGTACCGGTGCGCTATCTTGGGGGCTGATGTTCGGCA GCATGTGTGCTGCTGTCTACTGCTGTGTCTCGGGGGTGGTACAACGTACA GTACACCAAATAATTTTAGGTACACATTACGACCAAAGGGTTATGGATGG ATCCGACACTTGCGAGAGGATGCAGTACGCACGAGGTGCTTCAGTATCAC AGGGGTGATATTCGGGCTGGGGGGTGGGGGGCTGGAGGGTGGTGACAGGC GACACGCGACAGACACAACCTCAGGGTATGGAATGGAATGGTATCCCTCG TTTTGGGTACAAAGTTCGCGCACCTTCACCCGGTGTGTGTGTGTGTGGTT TGCTCCAGGAATGTGCTTGTGGGTATCTGTCACATCGTTTGTCGCGCGTA CGGTAACGGTAACGGTAACCGGCTGCCGACCCAGAAAGTAACTTGAGTTT AGTCGGGTTGGTTGTATTTCGGGCGCTAGCCCAGGTGCGGAGGAGTGTCG GGGTTACGCAAGTCGTCCTCCCGGCTCCCGAACCACCCCTCCCTTAATAC ACACTTCGCACGTTATGAACACTTTTTTTTGGGAGGGGGAGGGGAGGGAA GAGGATGATGGCCGACCTTGGGATGCGCTCCTCCTCTTCACCGATGGTGT ACGCCATGAACCTGCGGGCATCCATCGTGGTTCGGGTCGGTCCTGTTTTT TCGCCGGCCCACGTTTGTTGCTGTTAGCGCCCGCACTCGAGAACCTCTGC TTTTGGCCGCCGCACTCAAGAACCTCTAGTTTTTATTTTATATTTTCTTA AGAAAAAAAAGAAAAAAATCAAGAACCTCTGGTTTTTGCCGCACTCAAGA ACCTCTTGTTTTGGCCGCGTTCAATCAAGAACCTCCGGTTTTTGCCGCAC TCAAGAACCTCTTCTCTGTAGGTTTGGCCGCACTCACTCGAGAACCTCTG GTTTTTTCCGAGGCTTGGGGGGGGTCTTGAGGTACTAGGCTAGGTCTTGT TACTAATGGCCGCTACGTGACTCACATTGATTGGCGCCCAAGTTCTTGAA CTGCTGTGAGGTTTTCGAGCCTCAATTTCTTGACTACCAAGTTTTGTAGT GCGGGCGCGAACCGTAGTGTGTGTCGTTTGTTGTGTGCTCCCGTCTCCCA ACTTTTTATTGAAGGCATTGTTTGTCTCCAGGGATGATACGGGTGTTGCT GATAGCGATTGAGAGAGGACGGACACGACCGTGGTGTTTTTTTTTCGGGA GCTTGCGTTTCTTTCTTCCTGTTTTCGTTTTTTTTAAAGAAAAAATACAA GTACAAACACCGAAAGACTAC
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8671:629..6449+

>mRNA_E_fasciculatus_S2_contig8671.16784.1 ID=mRNA_E_fasciculatus_S2_contig8671.16784.1|Name=mRNA_E_fasciculatus_S2_contig8671.16784.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=339bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8671:629..6449+ (Ectocarpus fasciculatus EfasUO2)
ATGCTCGTCAAGCGAAAAGAGCAAGCGCCGGAGGGTTCCTACACCAAGAG
GCTTTTCGAGGACCCGGTTCTCTTGAGGAACAAGCTCGTCGAAGAGGCGC
AAGAACTTGCCGAGGCGGAAACCAAACAGCACGTCGCGGAGGAAGCTGCG
GACGTGACCTACTTCATGATGGTGCGGTGCGCAGCGGCTGGCGTTAGCTG
GGAGGACGTGGAGAAGGAGCTTGACAAGCGCTCGCTCAAGCTCAAGCGCC
GCCCAGGAAACGCGAAAGCAGAGCGCATCGCGGAGGGGGACAAGATTCTT
GGTGCGGGCCGCAAAGCTCAAGTGGCGAGCCTAGTCTGA
back to top