mRNA_E_fasciculatus_S2_contig8668.16780.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8668.16780.1
Unique NamemRNA_E_fasciculatus_S2_contig8668.16780.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8668.16780.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8668contigE_fasciculatus_S2_contig8668:254..6165 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size477
Hectar predicted targeting categoryother localisation
Exons5
Cds size477
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842523.7498171-CDS-E_fasciculatus_S2_contig8668:253..3961696842523.7498171-CDS-E_fasciculatus_S2_contig8668:253..396Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8668 254..396 +
1696842523.7630765-CDS-E_fasciculatus_S2_contig8668:1467..14921696842523.7630765-CDS-E_fasciculatus_S2_contig8668:1467..1492Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8668 1468..1492 +
1696842523.7734294-CDS-E_fasciculatus_S2_contig8668:1713..17801696842523.7734294-CDS-E_fasciculatus_S2_contig8668:1713..1780Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8668 1714..1780 +
1696842523.7838414-CDS-E_fasciculatus_S2_contig8668:4597..47341696842523.7838414-CDS-E_fasciculatus_S2_contig8668:4597..4734Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8668 4598..4734 +
1696842523.7932103-CDS-E_fasciculatus_S2_contig8668:6060..61651696842523.7932103-CDS-E_fasciculatus_S2_contig8668:6060..6165Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8668 6061..6165 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8668.16780.1prot_E_fasciculatus_S2_contig8668.16780.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8668 254..6165 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8668.16780.1

>prot_E_fasciculatus_S2_contig8668.16780.1 ID=prot_E_fasciculatus_S2_contig8668.16780.1|Name=mRNA_E_fasciculatus_S2_contig8668.16780.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=159bp
GEIPATLGQLGGLQVLYLQSNQLSGEWLQAKYDLSLGRVGVMHVEDVSAR
RLLGPWIPATLGQLGSLRQLYLDRNQLSGEIPATLGQLGSLERLLLSANK
LSGEWLQAENNLSSGRVGAKHVEDIPATLGQLGNLEVLYLESNQLSGEWL
QAEYGLCRL
back to top

mRNA from alignment at E_fasciculatus_S2_contig8668:254..6165+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8668.16780.1 ID=mRNA_E_fasciculatus_S2_contig8668.16780.1|Name=mRNA_E_fasciculatus_S2_contig8668.16780.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=5912bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8668:254..6165+ (Ectocarpus fasciculatus EfasUO2)
GGCGAGATTCCAGCGACGCTCGGACAGCTCGGCGGCTTGCAAGTTCTCTA
TCTCCAGTCGAACCAGCTCAGCGGTGAGTGGTTACAAGCTAAATACGATT
TGTCGTTGGGACGCGTGGGTGTGATGCATGTTGAAGATGTATCGTGGTTG
TGATTTTATGTTGTTTTTGCTTGTTGTGGCAAACATGTGTCCGTCGTGAC
ATACCACTGAGTTCTGCTATTTTCTCCCAAGTCAAGGTATATCAAGGCTG
CGATGTTTTCCAGCTCTGGCGGGATGTTTCCTGTGGCGACCAAGTACATA
CGAGTTTAGTGCGAGAACGATGATTATACCAGCAAATCGACTACGGCGAC
GAGTAGGGTGTGTGAGGGAAGGACTGCGCTGACGTCGTTTGTCACACGCA
CTCACATAGGCGTTGATTCGCGATCACTATGTGTCGGTGCGTTCGAAAAT
CGGACCACATATCAAGATGGTCGTGCTCAATTCTCACCGAACTCAAGAGG
CTCGGTTCGAAAGTTGCGGACCGAAAAATCTGTCGTGAATCACAAGCAAC
GATCCCTGCTTTAGCGTGTACACGCGCGACGTGTGCGGGATAGCTGGGGC
CCTGTCTCCTTTAACTGAACGAAGTGTAGATTTGCAATAACAAACTTGGC
AGGCGTTTCCTGGTTCGTCGAAGGGGATATTTCCTTGAACACGCTCCCCG
TCGAACATCACGGAATATTTGTTGTCTTTCAAGTTCCTCTCGTGTGCGCG
GGACGTTCGGTATGCCTCGGTTATTTGCCGGTCCTTATTGCCTCGTTTGT
CGTACTCTGGAGCATTTTGGGCTCCGAACCCGTTCCGCATCGGCCCGGTA
GGCGTGTTCCCTGACATCATCCACTACAGTGCCGTTCCAGATCGCAGCCA
CGTGTGTCATAAGGTCGCGAACGAATGGTGATTGCTTTTTTTAGGCTTGT
TAGGCTTGTGCAGCTTCGATTCCAGGACAAGTGTTGCTGCACGGGTACAT
CGAGTACGTGTCATTGCGTTGATTGGTACTGTAGGTCACGTACGGTCGGT
TGCGCAAGAAAACACGGTCACTGATGCCGGCAATTTGGAACTCAGCGCTC
AGCTGATTGGCTCTCGAAGCAACAGGCTACGGAGACAACTGTGAAATTGT
TCGATGCAACGGTTTGTTCTGTATGGTGGATGTACCACCGATAAAGCTCC
TTCAGTTTTGTGAGGGCTCGTAGGCTCCTAGGTCCTTGGGTATCGGTCCT
GCCCAAAGAGGAATAGCATCAAAATGAACAATAAATGAGCCGTGTGATGA
AGCTTGAGGAATACATACGTGTTGTGCCGACGCCGTGGGTGAGTAAAAGG
TGTTGTAGAACATGCGCAGGCAAGGCACTTGTTCGTGGAAGGTTCAGGAC
ACATGATCTAAACTGCACCATTTCACCACACCCGTTGTTCTACTGCACCA
TGCAGGCGAGATTCCAGCGACGTTAGGACAGCTCGGCAGCTTGCGACAAC
TCTATCTTGACAGGAACCAGCTCAGCGGTAAGTGGTTATAAGCTGAACAC
GATTTGTGTCGTCCGGACGCGTGGGTGCGAAGCATGTTGAAGATGTATCG
TGGTTGTGGTTTTATGTTGTTTTTTCTTGTGGGAAACATCATGTGGCCGT
CGTGACATACCACTTAGCTAAGCTATTTTCTCCCAAAGTGAAGGTATATC
AAGGCGTCGATGTTTTCCAGCTCTGGTGGGATGGAAATTGTGGCGACCAA
GTACATGCGAATTTAGTGCGAGAACGATGATTATACCAACAAATCGACTA
CGGCGACGAGTAGGGTGTGTGAGGGAAGGACTGGGCTGACGTCGTTGGTC
ACACGCACTCACATAGGCGTTGATTCGCGATCACTGTGTGTCGGTGCGTT
CGAAAATCGGACCACACATCAAGTTGATCCTACTCAATACTGACCGAACT
CCATGAGGAAAGGCTCGGTTCGGAAGTTGCTGACCGCAAAATTCGTCGTA
AATCACAAGCAACGATCCTTGCTCTAGCGTGTGCACGCTCCGCCCTGAAC
ACCACGCCATATGTGTGGTCTCTCAAGTTCCTCTCGTGTGCGCGGGACGT
TCGGTATCGCTCGGTTATTTGCCGGTCCTTATTGCCTCGTTTGTCGTACT
CTGGAGCATTTTGGGCTACAAACACGTTTCCCATCGGCCCGGCAGGCGTG
TTGGCTTTAGCCCACCCACTGTTGCAGGTGGCAGCATTGGGTCCCAACAG
GTTGCGAATGTTGTTTGGTGTTAGTCCACAGTACGCTGGAGCATAACCTT
TGCATGTCGGCAGCTTCGATCTCAGAAGACAGGTTGTTGCATGCGTTCAT
CGAACACACGAACCGACGCCTTGTAAAACACGTTCTCGCGTTCGTGTGGG
TGACCCGGTGATGTTGTAGAAACCGGAATGGAAAGCTAACAGTCCATTCC
TTTTACCTGCAAGTTGAGTTCGTTTCTGGCCAGGGCAAGGTGCACGAGTC
CGGCGGGGGCTCCCGGCTCGTTGGGGATGTATTCTGCGAGCAGCTGTCGC
AAGTTGTATGAATGGATTTGCTTTGTGTACAGTGGGGTCCCCGGTTTAGC
GACCCTCTGTTTAGCGACATGCCCTGTTTAGCGATCCCCAAATCTCGAGA
CACCGCTGCACCCCGGTGTAGCGACCATGTGGTCGCTAAACCGGTCGATC
CCACAATAGCGACTTCTTGGGCTGTTTTCAGCGAGCAATAGCGACCATCG
CCGGTTCAAATTTTGCGGAAACCCCGCTCCTCAACACACGAAAACACGTA
CAGATACTTTGGTTCTTACAGCAGTAGTATCACTGATACAAATCATCAGT
GAAAGGCTTAAAACAGACTCAAGCTACGCCCAGTATCCAGTAGGTTTTCT
TCCCACTCATTGCAAAGGCTAAGACTTGAACACATCCCCTTCGACTAAAT
TATATCTCGAACGGATAAATAATAGCCTTTCTGGGTTTGTTTGTTTATAT
ATATATTTCCTAAAGACACAATACTGCGGGACACGTTCACACACGCAACA
TGCCTTGCGCCAATCGATGGAGTGTTGTCAGTGCGGGGGGTGTGGGGAAC
TGATGGCGCCGCCGCCCTACTCGGAGCTTTCGTCGCATTTTGGATCATCG
CTAGAAGGAAGAGTTGTGCGGAGTCGTGTGGGTACCACTTCGCAAGGCAA
AGATACTGTTGTTCATCGAAGCACACGCCGCGAAACAAGCGCGACAGACA
TCATGTCTAGCAGCAGAAATATTTCACTAGCAGCACGAGACTTTGCCGCT
TGGTTGGGCGTTTACGAACTCTCTGCGTGCCATGTGGGGCGTTTGTATTT
TTTGTTATGTTTAGGGGACGTTGCCATGTATTTTTTCCCTTTCCCGCCTT
TGTTTTTCTCTCTTTCGCAGATTTTTGGACTTCTACGCGTTTAATAATAT
TGTGTTGGGCTGCGTGTACGTAAGGACAAATTGTTCAGCACGCAGGAAAA
GTAAAGGCACAGACGGGCGCCCTCTGTACACTTGTTGTTGAGACATTTCC
TAAAAAGTTCGAATTGGAATGCATACCGTATTGGAGCGCTACTCCCCGGC
TGTTTACCTAAAGAAAGGTGCTGCTTCTTTCCTCTACCTTCGTATGACTG
CTGCAATACAACGCATGCATAACCCGGTCAAAAGGAAGTCTGCAACACGG
CCTTTAGTCTAGTCCCACGAAATGGCGCTTTTCCCGGTTTAGCGACCGCT
AGTCGCTATTGAGGCTCCCGGTTTAGCGACCACTGGTCGCTATACCGGGT
TTAGCGACATGCCCTGAATAGCGACCATATTCCGTCGTGACACTAGGGGT
CGCTAAACCGGGGCCCCCACTGCTGTACTACTGACGCGTTCGAGCCAGTG
AAATATTTGTACGGACGAGAAAGTAGGGCCCCCCAGACATTAGAGCATCA
CAACGCGTAAGTAAAGAGGTGTTGTAATAGAAGCTCGATGGGCATGTGTT
AGTATTACAGGGGGTCTGGAAGAGGCAGGCTTTGAAGCTCACTATGAAGT
TGTACGAACCCGCCTACTTACCTGTAAGGTGCAGCACGGATGGCAGTTCT
TCAGCTCTTATTTTAGCCCCACCTTGAGGTATCGGTCCTGCACAAAGAGG
CATAGCATCAAAATGAACAATGAATGAGCCGTGTGATGAAGCTTGTGGAA
TACATACGTGTTGTGCCGACGACGTAGGGTGGGTAAAAGGTGTTGTAGAA
CATGCGCAGGCAACGCACTTGTTCGTGGAAGGCTCAGGGCACATGATCTA
AATTGCACCATTACACTAACCCGTTGTTCTACTGTACGATGCAGGCGAGA
TTCCAGCGACGTTAGGTCAGCTCGGCAGCTTGGAAAGGCTTCTTCTCTCT
GCCAACAAGCTCAGCGGTGAGTGGTTACAAGCTGAAAACAATTTGTCGTC
CGGACGCGTGGGTGCGAAGCATGTTGAAGATGTATCGTGGTTGTGATATT
ACGTTGTTTTTTCTTGTGGGAAACATGTGTCCGTCGTGACATGCCACTTA
GCTGAGCTATTTTCTCCCAAAGTGAAGGTATATCAAGGCGGCGAGGTTTT
CCAGCTCTGGTGGGATGGAAATTGTGGCGACCAAGTACATGCGAATTCAA
TACGAGAACGATGATTATACCCGCAACTCGACTACGGCGACGAGTAGGGT
GTGTGAGGGAAGAACTGCGCCGACGTCGTTGGTCACACGCACTAACATAG
GCGTTGATTCGCGATCACGCTGTGTCGGTGCGTTCGAAAATCGGACCACA
TATCAAGATGGTCGTGCTCAATTCTCACCGACTTCGAAAGGCTCGGTTCG
AAAGTTGCGGACCGAAAAATCTGTCGTGAATCACAAGCAACGATCCTTGC
TTTAGCGTGTACACGCGCGACGTGTGCGGGATCGCTGGGGCCCTGTCTCC
TTTAACTGAACGAAGTGTAGATTTTGCAATAACAAACTAGGCAGGCGTTT
CCTGGTTCGTCGAAGGGGATATTTCCTTGAACACGCTCCCCCTCGAACAT
CACGGAATATTTGTTGTCTTTCAAGTTCCTCTCGTGTGCGCGGGACGTTC
GGTATGCCTCGGTTATTTGCCGGTCCTTATTGCCTCGTTTGTCGTACTCT
GGAGCATCCTGGGCTACGAACCCGTTCCGCATCGGCCCGGCAGGCGTGTT
CCCTGACATACTCCAATACAGTGCCGTTCCAGATCGCAGCCACATGCCCC
GTATAAGGTCGCGAATGGTGATCGCTGTTAGTCAGCAGTACACTGGGGTA
TACGCTTTTAGACTTGTGCACCTTCGAATCCAGGAGAAGTGTTGTTGCAC
GGGTACATCGAGTACGTGTCCACTGTAGGTCACGTACGGTCGGTTGCCCA
AGAAAACACGGTCACTGATGCCGGCAATTAAGAACTCAGCGCTTAGGTGA
TTGGCCTAAGTCTGGAAGCAACAGGCTACGCAGACAACTATGAAATTGTT
CGATGCAACGTTTTTTTCTGTATGGTGAATGTACCACCGATGAAGCTTTT
TGAGCTTTGTGAGGGCTCTTTAGGCTCCTAGGTCCTTGGGTATCGGTCCT
GCCCAAAGAGGCATAGCATCGAAATGAGCAATGAATGAGCCGTGTGATGA
AGCTTGAGGAATACATTCTTGTTGTGCCGACGACGTAGGGTGGGGAAAAG
GTGTTGTAGAACATGCGCAGGCAACGCACTTGTTCGTGGAAGGCTCAGGA
CACATGATGTAAATTGCACCACACACTAACCCGTTGTTCTACTGCGATGC
AGGCGAGATTCCAGCCACGTTAGGACAGCTCGGCAACTTAGAAGTGCTCT
ATCTCGAGTCGAACCAGCTCAGCGGTGAGTGGTTACAAGCTGAATACGGT
TTGTGTCGTTTG
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8668:254..6165+

>mRNA_E_fasciculatus_S2_contig8668.16780.1 ID=mRNA_E_fasciculatus_S2_contig8668.16780.1|Name=mRNA_E_fasciculatus_S2_contig8668.16780.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=477bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8668:254..6165+ (Ectocarpus fasciculatus EfasUO2)
GGCGAGATTCCAGCGACGCTCGGACAGCTCGGCGGCTTGCAAGTTCTCTA
TCTCCAGTCGAACCAGCTCAGCGGTGAGTGGTTACAAGCTAAATACGATT
TGTCGTTGGGACGCGTGGGTGTGATGCATGTTGAAGATGTATCGGCTCGT
AGGCTCCTAGGTCCTTGGATTCCAGCGACGTTAGGACAGCTCGGCAGCTT
GCGACAACTCTATCTTGACAGGAACCAGCTCAGCGGCGAGATTCCAGCGA
CGTTAGGTCAGCTCGGCAGCTTGGAAAGGCTTCTTCTCTCTGCCAACAAG
CTCAGCGGTGAGTGGTTACAAGCTGAAAACAATTTGTCGTCCGGACGCGT
GGGTGCGAAGCATGTTGAAGATATTCCAGCCACGTTAGGACAGCTCGGCA
ACTTAGAAGTGCTCTATCTCGAGTCGAACCAGCTCAGCGGTGAGTGGTTA
CAAGCTGAATACGGTTTGTGTCGTTTG
back to top