mRNA_E_fasciculatus_S2_contig8661.16776.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8661.16776.1
Unique NamemRNA_E_fasciculatus_S2_contig8661.16776.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8661.16776.1 vs.
Match: Amino (acid/peptide transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1M8_ECTSI)

HSP 1 Score: 196 bits (498), Expect = 2.270e-57
Identity = 107/161 (66.46%), Postives = 108/161 (67.08%), Query Frame = 1
Query:    1 VSVFGADQFDEDDPGDVKEKQSFFNCMVLCFFLSFLAGVLLFLLFGTAVQRAXXXXXXXXXXXXXXXXXNDPAGRFYWSINLGALVSFTLVSYVCQYGLPFLGGPDWGFMAGYSIPCIAMSLALVVFLAGTPKYRRFPPSGSVVSRAAGVVAEACRKRCNA 483
            VSVFGADQF+EDDP DVKEKQSFFN                                                  FYWSINLGALVSFTLVSYVCQYGL FLGGPDWGFMAGYSIPCIAMSLALVVFLAGTPKYRRFPPSGSVVSRAAGVV EACRKRCNA
Sbjct:   30 VSVFGADQFEEDDPADVKEKQSFFNW-------------------------------------------------FYWSINLGALVSFTLVSYVCQYGLSFLGGPDWGFMAGYSIPCIAMSLALVVFLAGTPKYRRFPPSGSVVSRAAGVVTEACRKRCNA 141          
BLAST of mRNA_E_fasciculatus_S2_contig8661.16776.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9H6_9PHAE)

HSP 1 Score: 200 bits (508), Expect = 3.070e-57
Identity = 109/162 (67.28%), Postives = 109/162 (67.28%), Query Frame = 1
Query:    1 VSVFGADQFDEDDPGDVKEKQSFFNCMVLCFFLSFLAGVLLFLLFGTAVQRAXXXXXXXXXXXXXXXXXNDPAGRFYWSINLGALVSFTLVSYVCQYGLPFLGGPDWGFMAGYSIPCIAMSLALVVFLAGTPKYRRFPPSGSVVSRAAGVVAEACRKRCNAA 486
            VSVFGADQFDEDDP DV EKQSFFN                                                  FYWSINLGALVSFTLVSYVCQYGLPFLGGPDWGFMAGYSIPCIAMSLALVVFLAGTPKYRRFPPSGSVVSRAAGVV EACRKRCNAA
Sbjct:  198 VSVFGADQFDEDDPADVNEKQSFFNW-------------------------------------------------FYWSINLGALVSFTLVSYVCQYGLPFLGGPDWGFMAGYSIPCIAMSLALVVFLAGTPKYRRFPPSGSVVSRAAGVVTEACRKRCNAA 310          
BLAST of mRNA_E_fasciculatus_S2_contig8661.16776.1 vs.
Match: Hypothetical (protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UH25_9STRA)

HSP 1 Score: 122 bits (307), Expect = 1.870e-29
Identity = 68/162 (41.98%), Postives = 88/162 (54.32%), Query Frame = 1
Query:    1 VSVFGADQFDEDDPGDVKEKQSFFNCMVLCFFLSFLAGVLLFLLFGTAVQRAXXXXXXXXXXXXXXXXXNDPAGRFYWSINLGALVSFTLVSYVCQYGLPFLGGPDWGFMAGYSIPCIAMSLALVVFLAGTPKYRRFPPSGSVVSRAAGVVAEACRKRCNAA 486
            VS FGADQFD+D+  D KEK+SFFN                                                  FYWSINLGAL+S+TLV+Y+CQYG+  LGG DWGF  G+ IP ++M+LA++ F +GTPK+   PPSGS++S A G++ EA   R N A
Sbjct:  103 VSTFGADQFDDDNEQDKKEKESFFNW-------------------------------------------------FYWSINLGALISYTLVAYICQYGIAGLGGEDWGFFIGFIIPAVSMALAILAFYSGTPKFTIKPPSGSILSAACGMIFEAAVTRRNEA 215          
BLAST of mRNA_E_fasciculatus_S2_contig8661.16776.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GU63_9STRA)

HSP 1 Score: 105 bits (262), Expect = 2.960e-24
Identity = 46/83 (55.42%), Postives = 63/83 (75.90%), Query Frame = 1
Query:  226 FYWSINLGALVSFTLVSYVCQYGLPFLGGPDWGFMAGYSIPCIAMSLALVVFLAGTPKYRRFPPSGSVVSRAAGVVAEACRKR 474
            FYWSINLGAL+++T+V+Y+CQYGLP LGG  WGF  GY IP I + + + VF++ T KY + PP GS+VS+A G++ EA  +R
Sbjct:  164 FYWSINLGALLAYTIVAYICQYGLPGLGGETWGFFVGYLIPTIFLGIGIAVFMSATTKYVKHPPQGSMVSKALGIMFEAVVRR 246          
BLAST of mRNA_E_fasciculatus_S2_contig8661.16776.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pseudomonadales bacterium 32-42-5 TaxID=1970543 RepID=A0A258AGE5_9GAMM)

HSP 1 Score: 101 bits (252), Expect = 1.010e-23
Identity = 62/128 (48.44%), Postives = 71/128 (55.47%), Query Frame = 1
Query:    1 VSVFGADQFDEDDPGDVKEKQSFFNCMVLCFFLSFLAGVLLFLLFGTAVQRAXXXXXXXXXXXXXXXXXNDPAGRFYWSINLGALVSFTLVSYVCQYGL-PFLGGPDWGFMAGYSIPCIAMSLALVVF 381
            +S  GADQFDE    D KEK+SFFN  VL   L   A ++LF L G     A                   P  RFYWSINLGAL+S+TLV+Y+CQYG  P LGG  WGF  GY+IP I MS  L  F
Sbjct:    1 MSTLGADQFDERYSADRKEKESFFNWYVL---LVCNAMLILFFLLGDQRPHAFCKQFLSRPPHCSPFLLLPPPFRFYWSINLGALISYTLVAYICQYGAGPDLGGEKWGFFVGYTIPSIMMSKFLFCF 125          
BLAST of mRNA_E_fasciculatus_S2_contig8661.16776.1 vs.
Match: Uncharacterized (protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UWI9_9ARCH)

HSP 1 Score: 92.8 bits (229), Expect = 3.570e-21
Identity = 54/120 (45.00%), Postives = 66/120 (55.00%), Query Frame = 1
Query:    1 VSVFGADQFDEDDPGDVKEKQSFFNCMVLCFFLSFLAGVLLFLLFGTAVQRAXXXXXXXXXXXXXXXXXNDPAGRFYWSINLGALVSFTLVSYVCQYGLPFLGGPDWGFMAGYSIPCIAM 360
            V   GADQFD+    D KEK+SFFN +VL      +A V  + ++      A                      RFYWSINLG+L+S+TLV+Y+CQYGLPFLGG  WGF  GY IP I M
Sbjct:   17 VCTMGADQFDDRYTQDRKEKESFFNWLVL------IAVVNNYYIYCHKPHTAYFIRHTPYTSNRFYLYR-----RFYWSINLGSLISYTLVAYICQYGLPFLGGEKWGFFVGYCIPAIMM 125          
BLAST of mRNA_E_fasciculatus_S2_contig8661.16776.1 vs.
Match: POT (family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK04_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 8.170e-19
Identity = 42/80 (52.50%), Postives = 64/80 (80.00%), Query Frame = 1
Query:  226 FYWSINLGALVSFTLVSYVCQYGLPFLGGPDWGFMAGYSIPCIAMSLALVVFLAGTPKYRRFPP-SGSVVSRAAGVVAEA 462
            FY SINLGAL+S++LV+Y+CQYG+  LGG  WGF  G++IPCIAM++A+V+F+AG+ +Y    P  GS++S++A ++ +A
Sbjct:  111 FYGSINLGALISYSLVAYICQYGVGGLGGEPWGFTVGFTIPCIAMAIAIVLFVAGSRRYTICGPVGGSMMSKSAAIIKDA 190          
BLAST of mRNA_E_fasciculatus_S2_contig8661.16776.1 vs.
Match: Peptide (transporter ptr1 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJG8_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 4.210e-14
Identity = 36/82 (43.90%), Postives = 56/82 (68.29%), Query Frame = 1
Query:  226 FYWSINLGALVSFTLVSYVCQYGLPFLGGPDWGFMAGYSIPCIAMSLALVVFLAGTPKYRRFPPSGSVVSRAAGVVAEACRK 471
            FY +IN GAL+SFTLV  + QYG+ ++GG D+ F  G+S+  I  +  + +FL G  +Y + PPSGSV++R+  ++ +A RK
Sbjct:  221 FYAAINCGALISFTLVVSITQYGVSWIGGMDYRFSVGFSVAAIITTCGIAIFLFGRHRYTKLPPSGSVLARSLSILLQAARK 302          
BLAST of mRNA_E_fasciculatus_S2_contig8661.16776.1 vs.
Match: Hypothetical (protein n=1 Tax=Picochlorum oklahomense TaxID=249345 RepID=A0A7S1CW14_9CHLO)

HSP 1 Score: 67.4 bits (163), Expect = 5.710e-10
Identity = 51/157 (32.48%), Postives = 70/157 (44.59%), Query Frame = 1
Query:    1 VSVFGADQFDEDDPGDVKEKQSFFNCMVLCFFLSFLAGVLLFLLFGTAVQRAXXXXXXXXXXXXXXXXXNDPAGRFYWSINLGALVSFTLVSYVCQYGLPFLGGPDWGFMAGYSIPCIAMSLALVVFLAGTPKYRRFPPSGSVVSRAAGVVAEACRK 471
            VS FGADQFDE DP D KEK+SFFN                                                  FY+SIN+G+L++ T + ++ +          W    G+ IP IAM++A+V F+AG+P+YR   PS S +SR   V   A R+
Sbjct:  156 VSAFGADQFDELDPRDRKEKKSFFNW-------------------------------------------------FYFSINVGSLLAVTGIVWIQE-------NVSWAI--GFVIPAIAMAVAVVTFIAGSPRYRHVKPSESPISRVYRVTIAAWRE 254          
BLAST of mRNA_E_fasciculatus_S2_contig8661.16776.1 vs.
Match: Uncharacterized (protein n=15 Tax=50 kb inversion clade TaxID=2231393 RepID=I1K3A6_SOYBN)

HSP 1 Score: 66.2 bits (160), Expect = 1.410e-9
Identity = 51/158 (32.28%), Postives = 67/158 (42.41%), Query Frame = 1
Query:    1 VSVFGADQFDEDDPGDVKEKQSFFNCMVLCFFLSFLAGVLLFLLFGTAVQRAXXXXXXXXXXXXXXXXXNDPAGRFYWSINLGALVSFTLVSYVCQYGLPFLGGPDWGFMAGYSIPCIAMSLALVVFLAGTPKYRRFPPSGSVVSRAAGVVAEACRKR 474
            VS FGADQFD+ DPG+  +K SFFN                                                  FY+SIN+GALVS T + ++ +          WG   G+ IP + M+LA+  F  GTP YR   P GS ++R   VV  + RKR
Sbjct:  178 VSSFGADQFDDTDPGERIKKGSFFNW-------------------------------------------------FYFSINIGALVSSTFIVWIQE-------NAGWGL--GFGIPALFMALAIGSFFLGTPLYRFQKPGGSPITRMCQVVVASVRKR 277          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8661.16776.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Amino2.270e-5766.46acid/peptide transporter n=1 Tax=Ectocarpus silicu... [more]
Uncharacterized3.070e-5767.28protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Hypothetical1.870e-2941.98protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=1... [more]
Hypothetical2.960e-2455.42protein (Fragment) n=1 Tax=Spumella elongata TaxID... [more]
Uncharacterized1.010e-2348.44protein n=1 Tax=Pseudomonadales bacterium 32-42-5 ... [more]
Uncharacterized3.570e-2145.00protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A48... [more]
POT8.170e-1952.50family-domain-containing protein n=1 Tax=Tribonema... [more]
Peptide4.210e-1443.90transporter ptr1 n=1 Tax=Nannochloropsis gaditana ... [more]
Hypothetical5.710e-1032.48protein n=1 Tax=Picochlorum oklahomense TaxID=2493... [more]
Uncharacterized1.410e-932.28protein n=15 Tax=50 kb inversion clade TaxID=22313... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8661contigE_fasciculatus_S2_contig8661:1777..3454 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score200.3
Seed ortholog evalue7.3e-49
Seed eggNOG ortholog2880.D7G1M8
Model size513
KEGG koko:K14638,ko:K14639
KEGG TC2.A.17.3
Hectar predicted targeting categorysignal anchor
Exons4
EggNOG free text desc.oligopeptide transport
EggNOG OGsCOG3104@1,KOG1237@2759
Cds size513
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842523.404851-CDS-E_fasciculatus_S2_contig8661:1776..18531696842523.404851-CDS-E_fasciculatus_S2_contig8661:1776..1853Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8661 1777..1853 +
1696842523.4182696-CDS-E_fasciculatus_S2_contig8661:1891..19601696842523.4182696-CDS-E_fasciculatus_S2_contig8661:1891..1960Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8661 1892..1960 +
1696842523.4287071-CDS-E_fasciculatus_S2_contig8661:2145..23971696842523.4287071-CDS-E_fasciculatus_S2_contig8661:2145..2397Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8661 2146..2397 +
1696842523.451346-CDS-E_fasciculatus_S2_contig8661:3339..34541696842523.451346-CDS-E_fasciculatus_S2_contig8661:3339..3454Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8661 3340..3454 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8661.16776.1prot_E_fasciculatus_S2_contig8661.16776.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8661 1777..3454 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8661.16776.1

>prot_E_fasciculatus_S2_contig8661.16776.1 ID=prot_E_fasciculatus_S2_contig8661.16776.1|Name=mRNA_E_fasciculatus_S2_contig8661.16776.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=171bp
VSVFGADQFDEDDPGDVKEKQSFFNCMVLCFFLSFLAGVLLFLLFGTAVQ
RAATTATTTTNNNNQPPTTNDPAGRFYWSINLGALVSFTLVSYVCQYGLP
FLGGPDWGFMAGYSIPCIAMSLALVVFLAGTPKYRRFPPSGSVVSRAAGV
VAEACRKRCNAACTATRVGVA
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mRNA from alignment at E_fasciculatus_S2_contig8661:1777..3454+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8661.16776.1 ID=mRNA_E_fasciculatus_S2_contig8661.16776.1|Name=mRNA_E_fasciculatus_S2_contig8661.16776.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1678bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8661:1777..3454+ (Ectocarpus fasciculatus EfasUO2)
GTGAGCGTCTTCGGAGCGGACCAGTTCGACGAAGATGACCCGGGAGACGT CAAGGAGAAGCAGTCGTTCTTCAATTGGTGAGCTCGTGATTTGTTTCGGT ACTGCATAGCAATAGCATGGTTTTGTGTTTTTTTCTGTCATTTCTGGCGG GTGTGTTGTTGTTTCTGTTGTTTGGAACTGCTGTGTTGGGTAGCCTTAGC CTTAGTGACTGGGGAAGGGAAGGGTGGCTCTCTTGGTTATTGGTTGACAC CTTCACTTGACCCAGTATTGTAGGGGTCCAGAGGTACTCAGTAGAGACGT TAGCGCGCCGTTTTTTTAATTTGGAGCCTATAACGACAAATAGCTATTTA GCTTTTATTAATTTGATAGACAAAGAGCAGCAACAACAGCAACAACAACA ACCAACAACAACAACCAACCACCCACAACCAACGATCCCGCGGGCAGGTT TTACTGGAGCATTAACCTTGGGGCCTTGGTGAGCTTCACGTTGGTGTCGT ACGTGTGCCAATACGGGCTTCCTTTTCTAGGGGGACCAGACTGGGGCTTC ATGGCGGGATACTCCATTCCCTGCATCGCCATGTCCTTGGCGCTTGTGGT CTTCTTGGCGGGGACACCCAAGTAAGAGTAAGAAAGAGGCACCGCACCAG ACTACGCCAAACGCTCGTGTACGGGTGGCACCCGACTGAGTCACTCACGT AAGAGAGAGGCACTCAAGTACGACAAATGCTCGTATAGGAGCGGCATCTG ATTGAGAGAGACACCCGAGTAAGACAAATGCCCGTATACGGGCGGCACCC CACTGAGGCAAACACTCACGTACGAGAGAGGCACCCGACTAAGACGAGCG CTCGTGTAAGGGCGGCACTCGACGAAGGTAAACACTCACGTAAGAGAGAG GCTCTCGACTAAGACGAACGCTCGTATAGGAGCGAACGCTCGTATAAAGC GGCATCCGATTGAGACAAGCACCCGAGCAAGAGAGAGTCACCCAAGTAAG AGTAAGAGAGAGGCACTCGACTAAGACGAATGCTCGTATAAGGGCGGCAC CTGACCAGAGTAAGACAAATACTCGCGGAAGAGAGAGGCAGTGGGGCAAG ACAAACACTCACGGAAGCGAGAGGCACTCAAGCAAGACAACAAACACCCA AGTACTACTGTAGAGAGAGGCACCCAAACATGACAATCGCCCGTACCTGA GCGGCGCCCGATTAGGACAATAACTCACGTATGAGGGAGGTACTCTAGTA AGACAGGCACCCAAGTAAGAAAACAAACACCTCTTATACCTCAGAGAGGC ACCAGGGCAAGACAGACACGTAGATGCCTTCGGAGACAGTGCGACCGTGG CCGACGATGCCCGCTGCCCAGGAAGAGTCGGCCAATCAGAAGTCGGCGCC GCCAGTGTTGACCAATACATAGGAAAACTGCGGGCAGAGTCTCTAATTGC TGTCGCCGTCGTCGCGGCGCCGCCAGTGTTGACCAATACATAAGAAAACT GCGGGCAGAGTCTCTAATTGCTGTCGTCGCCGTCGTCGTCGTCGTTCCTC CTACTATAAAAAGGTACCGACGGTTTCCACCATCCGGCAGCGTCGTTAGC CGAGCCGCGGGGGTCGTGGCCGAAGCCTGCCGTAAGAGGTGCAACGCTGC GTGCACAGCGACTAGGGTTGGAGTTGCC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8661:1777..3454+

>mRNA_E_fasciculatus_S2_contig8661.16776.1 ID=mRNA_E_fasciculatus_S2_contig8661.16776.1|Name=mRNA_E_fasciculatus_S2_contig8661.16776.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=513bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8661:1777..3454+ (Ectocarpus fasciculatus EfasUO2)
GTGAGCGTCTTCGGAGCGGACCAGTTCGACGAAGATGACCCGGGAGACGT
CAAGGAGAAGCAGTCGTTCTTCAATTGCATGGTTTTGTGTTTTTTTCTGT
CATTTCTGGCGGGTGTGTTGTTGTTTCTGTTGTTTGGAACTGCTGTACAA
AGAGCAGCAACAACAGCAACAACAACAACCAACAACAACAACCAACCACC
CACAACCAACGATCCCGCGGGCAGGTTTTACTGGAGCATTAACCTTGGGG
CCTTGGTGAGCTTCACGTTGGTGTCGTACGTGTGCCAATACGGGCTTCCT
TTTCTAGGGGGACCAGACTGGGGCTTCATGGCGGGATACTCCATTCCCTG
CATCGCCATGTCCTTGGCGCTTGTGGTCTTCTTGGCGGGGACACCCAAGT
ACCGACGGTTTCCACCATCCGGCAGCGTCGTTAGCCGAGCCGCGGGGGTC
GTGGCCGAAGCCTGCCGTAAGAGGTGCAACGCTGCGTGCACAGCGACTAG
GGTTGGAGTTGCC
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