mRNA_E_fasciculatus_S2_contig8661.16775.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E_fasciculatus_S2_contig8661.16775.1
Unique Name	mRNA_E_fasciculatus_S2_contig8661.16775.1
Type	mRNA
Organism	Ectocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)

Homology

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BLAST of mRNA_E_fasciculatus_S2_contig8661.16775.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9H6_9PHAE)

HSP 1 Score: 144 bits (364), Expect = 9.200e-39
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 3

Query:    3 SLVLLFEKELGYTNAESDTQFALWSGVCYVMPLFGGWIADSYLGRYHSILCFSVIYLVGLFVAAASCVP 209
            SLVLLFEKELGYTNAESDTQFALWSGVCYVMPLFGGWIADSYLGRYHSILCFSVIYLVGLFVAAASCVP
Sbjct:  104 SLVLLFEKELGYTNAESDTQFALWSGVCYVMPLFGGWIADSYLGRYHSILCFSVIYLVGLFVAAASCVP 172

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BLAST of mRNA_E_fasciculatus_S2_contig8661.16775.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3L1_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 4.260e-23
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 3

Query:    3 SLVLLFEKELGYTNAESDTQFALWSGVCYVMPLFGGWIADSYL 131
            SLVLLFEKELGYTNAESDTQFALWSGVCYVMPLFGGWIADSYL
Sbjct:  105 SLVLLFEKELGYTNAESDTQFALWSGVCYVMPLFGGWIADSYL 147

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BLAST of mRNA_E_fasciculatus_S2_contig8661.16775.1 vs.
Match: Hypothetical (protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UH25_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 3.310e-19
Identity = 38/69 (55.07%), Postives = 50/69 (72.46%), Query Frame = 3

Query:    3 SLVLLFEKELGYTNAESDTQFALWSGVCYVMPLFGGWIADSYLGRYHSILCFSVIYLVGLFVAAASCVP 209
            SLVL F+  L Y NA++D Q+++WSG CYV PLFGGW+ADSYLGRY++IL    +YL GL +     +P
Sbjct:    9 SLVLFFQSRLDYDNADADVQYSIWSGFCYVTPLFGGWLADSYLGRYNTILILCALYLSGLVLMVFGAIP 77

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BLAST of mRNA_E_fasciculatus_S2_contig8661.16775.1 vs.
Match: Peptide (transporter ptr1 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJG8_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 6.280e-19
Identity = 38/69 (55.07%), Postives = 52/69 (75.36%), Query Frame = 3

Query:    3 SLVLLFEKELGYTNAESDTQFALWSGVCYVMPLFGGWIADSYLGRYHSILCFSVIYLVGLFVAAASCVP 209
            SLVLLF+ +L YTNA++D  +A+WSG+CY  PL GGW+ADSYLGR+ +I  FS +YL+GL +     +P
Sbjct:   87 SLVLLFQSQLNYTNAQADNAYAVWSGLCYCAPLLGGWLADSYLGRFKTIGIFSGVYLLGLIILIIGVLP 155

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BLAST of mRNA_E_fasciculatus_S2_contig8661.16775.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GU63_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 5.140e-15
Identity = 35/60 (58.33%), Postives = 45/60 (75.00%), Query Frame = 3

Query:    3 SLVLLFEKELGYTNAESDTQFALWSGVCYVMPLFGGWIADSYLGRYHSILCFSVIYLVGL 182
            SLVL F+ +L Y+N E+   F LW+G  YV PL GG+IAD+YLGRY +IL F++IYL GL
Sbjct:   44 SLVLFFQTQLDYSNEEAVNAFYLWNGAVYVTPLLGGYIADTYLGRYKTILFFAIIYLFGL 103

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BLAST of mRNA_E_fasciculatus_S2_contig8661.16775.1 vs.
Match: Uncharacterized (protein n=1 Tax=Carpinus fangiana TaxID=176857 RepID=A0A660KRY6_9ROSI)

HSP 1 Score: 71.2 bits (173), Expect = 7.750e-13
Identity = 30/60 (50.00%), Postives = 44/60 (73.33%), Query Frame = 3

Query:    3 SLVLLFEKELGYTNAESDTQFALWSGVCYVMPLFGGWIADSYLGRYHSILCFSVIYLVGL 182
            +LVL F+K+L   +A +    + WSG CY+ PL G +IAD+YLGRY +I CFS+IY++G+
Sbjct:   51 NLVLYFKKQLHQHSATASKNASNWSGTCYITPLIGAFIADAYLGRYWTIACFSIIYVIGM 110

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BLAST of mRNA_E_fasciculatus_S2_contig8661.16775.1 vs.
Match: Protein (NRT1/ PTR FAMILY 8.1 like n=4 Tax=Actinidia TaxID=3624 RepID=A0A2R6QJ88_ACTCC)

HSP 1 Score: 71.2 bits (173), Expect = 7.760e-13
Identity = 29/60 (48.33%), Postives = 44/60 (73.33%), Query Frame = 3

Query:    3 SLVLLFEKELGYTNAESDTQFALWSGVCYVMPLFGGWIADSYLGRYHSILCFSVIYLVGL 182
            +LVL F+ +L  T+A +    + WSG CY+ PL G ++AD+YLGRY +I CFS+IY++G+
Sbjct:   66 NLVLYFKHQLNQTSATASKNQSDWSGTCYITPLIGAFLADAYLGRYWTIACFSIIYIIGM 125

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BLAST of mRNA_E_fasciculatus_S2_contig8661.16775.1 vs.
Match: Uncharacterized (protein n=3 Tax=Gossypium TaxID=3633 RepID=A0A7J9L1F7_GOSSC)

HSP 1 Score: 70.1 bits (170), Expect = 1.140e-12
Identity = 31/66 (46.97%), Postives = 44/66 (66.67%), Query Frame = 3

Query:    3 SLVLLFEKELGYTNAESDTQFALWSGVCYVMPLFGGWIADSYLGRYHSILCFSVIYLVGLFVAAAS 200
            +LVL F+ +L    A +      WSG CY+ PL G ++ADSYLGRY +I CFS+IY++G+ + A S
Sbjct:   51 NLVLYFKHQLNQHTATASKNNQNWSGTCYITPLLGAFLADSYLGRYWTIACFSIIYIIGMTLLAMS 116

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BLAST of mRNA_E_fasciculatus_S2_contig8661.16775.1 vs.
Match: protein (NRT1/ PTR FAMILY 8.1-like n=19 Tax=Gossypium TaxID=3633 RepID=A0A6P4NA31_GOSAR)

HSP 1 Score: 70.5 bits (171), Expect = 1.450e-12
Identity = 31/66 (46.97%), Postives = 45/66 (68.18%), Query Frame = 3

Query:    3 SLVLLFEKELGYTNAESDTQFALWSGVCYVMPLFGGWIADSYLGRYHSILCFSVIYLVGLFVAAAS 200
            +LVL F+ +L   +A +      WSG CY+ PL G ++ADSYLGRY +I CFS+IY++G+ + A S
Sbjct:   51 NLVLYFKHQLNQHSATASKNNQNWSGTCYITPLIGAFLADSYLGRYWTIACFSIIYIIGMTLLAMS 116

[Close]

BLAST of mRNA_E_fasciculatus_S2_contig8661.16775.1 vs.
Match: protein (NRT1/ PTR FAMILY 8.2-like n=4 Tax=Coffea TaxID=13442 RepID=A0A6P6UFI5_COFAR)

HSP 1 Score: 69.7 bits (169), Expect = 2.700e-12
Identity = 29/60 (48.33%), Postives = 42/60 (70.00%), Query Frame = 3

Query:    3 SLVLLFEKELGYTNAESDTQFALWSGVCYVMPLFGGWIADSYLGRYHSILCFSVIYLVGL 182
            +LVL F+  LG  NA +    + WSG CY+ PL G + AD+YLGR+ +I CFS+IY++G+
Sbjct:   51 NLVLFFKHRLGQHNATASKNVSDWSGTCYITPLIGAFFADAYLGRFWTIACFSIIYVLGM 110

The following BLAST results are available for this feature:

BLAST of mRNA_E_fasciculatus_S2_contig8661.16775.1 vs.

BLAST of mRNA_E_fasciculatus_S2_contig8661.16775.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
Uncharacterized	9.200e-39	100.00	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]
Uncharacterized	4.260e-23	100.00	protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ...	[more]
Hypothetical	3.310e-19	55.07	protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=1...	[more]
Peptide	6.280e-19	55.07	transporter ptr1 n=1 Tax=Nannochloropsis gaditana ...	[more]
Hypothetical	5.140e-15	58.33	protein (Fragment) n=1 Tax=Spumella elongata TaxID...	[more]
Uncharacterized	7.750e-13	50.00	protein n=1 Tax=Carpinus fangiana TaxID=176857 Rep...	[more]
Protein	7.760e-13	48.33	NRT1/ PTR FAMILY 8.1 like n=4 Tax=Actinidia TaxID=...	[more]
Uncharacterized	1.140e-12	46.97	protein n=3 Tax=Gossypium TaxID=3633 RepID=A0A7J9L...	[more]
protein	1.450e-12	46.97	NRT1/ PTR FAMILY 8.1-like n=19 Tax=Gossypium TaxID...	[more]
protein	2.700e-12	48.33	NRT1/ PTR FAMILY 8.2-like n=4 Tax=Coffea TaxID=134...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E_fasciculatus_S2_contig8661	contig	E_fasciculatus_S2_contig8661:365..971 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO2	2022-07-07

Properties


Property Name	Value
Stop	1
Start	0
Model size	210
Hectar predicted targeting category	no signal peptide or anchor
Exons	2
Cds size	165

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696842523.3365877-CDS-E_fasciculatus_S2_contig8661:364..496	1696842523.3365877-CDS-E_fasciculatus_S2_contig8661:364..496	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig8661 365..496 +
1696842523.357817-CDS-E_fasciculatus_S2_contig8661:894..927	1696842523.357817-CDS-E_fasciculatus_S2_contig8661:894..927	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig8661 895..927 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696842523.3730383-UTR-E_fasciculatus_S2_contig8661:927..971	1696842523.3730383-UTR-E_fasciculatus_S2_contig8661:927..971	Ectocarpus fasciculatus EfasUO2	UTR	E_fasciculatus_S2_contig8661 928..971 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E_fasciculatus_S2_contig8661.16775.1	prot_E_fasciculatus_S2_contig8661.16775.1	Ectocarpus fasciculatus EfasUO2	polypeptide	E_fasciculatus_S2_contig8661 365..927 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E_fasciculatus_S2_contig8661:365..971+
coding sequence from alignment at E_fasciculatus_S2_contig8661:365..971+

protein sequence of mRNA_E_fasciculatus_S2_contig8661.16775.1

>prot_E_fasciculatus_S2_contig8661.16775.1 ID=prot_E_fasciculatus_S2_contig8661.16775.1|Name=mRNA_E_fasciculatus_S2_contig8661.16775.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=55bp
GPLCYSSRRSLGTQTRSRTPSSPSGPACATSCPCSAAGSPIVTWAGTTLF
CVFR*

mRNA from alignment at E_fasciculatus_S2_contig8661:365..971+

Legend: CDSpolypeptideUTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E_fasciculatus_S2_contig8661.16775.1 ID=mRNA_E_fasciculatus_S2_contig8661.16775.1|Name=mRNA_E_fasciculatus_S2_contig8661.16775.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=607bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8661:365..971+ (Ectocarpus fasciculatus EfasUO2)
GGTCCCTTGTGCTACTCTTCGAGAAGGAGCTTGGGTACACAAACGCGGAG
TCGGACACCCAGTTCGCCCTCTGGTCCGGCGTGTGCTACGTCATGCCCCT
GTTCGGCGGCTGGATCGCCGATAGTTACCTGGGTGAGTCCGCCGAATCCC
AAAGCTCTGCATAAGTCGTGGTCATCGCTGAATTTTATGATGCTGGCCTG
TCGGCTATCGCTGTTGTCGTAACATCGGGAGCATGTACATCGCCCCTTTG
CAGCATGTAGCATACAACAGGATTCTGACTTGAGAGGCGTTCAGCCATGC
ATCCGGGGTCAGAAGCGTAGTTCCGTTTCGGGAGTGACACGAGGTCAACG
GTTACAACCGACGAGCCAATGAGTACCCGCCCTGCCCCCCCCCCCGCCCC
CCCACCTCTGCCACGCTAGACTTTCAACTCTCCTTTTTCTCTAAGTAAGA
ATGTTTGGAAACCTAAACCTCACCGTGCTCGTCCCTATCGCGTCTTGCTC
CTGTAACTGAATGCCCCCTCATTTTTGCAGGCCGGTACCACTCTATTCTG
TGTTTTTCGGTGATTTACTTGGTGGGGCTGTTTGTCGCGGCGGCCTCCTG
CGTGCCC

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8661:365..971+

>mRNA_E_fasciculatus_S2_contig8661.16775.1 ID=mRNA_E_fasciculatus_S2_contig8661.16775.1|Name=mRNA_E_fasciculatus_S2_contig8661.16775.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=165bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8661:365..971+ (Ectocarpus fasciculatus EfasUO2)
GGTCCCTTGTGCTACTCTTCGAGAAGGAGCTTGGGTACACAAACGCGGAG
TCGGACACCCAGTTCGCCCTCTGGTCCGGCGTGTGCTACGTCATGCCCCT
GTTCGGCGGCTGGATCGCCGATAGTTACCTGGGCCGGTACCACTCTATTC
TGTGTTTTTCGGTGA