mRNA_E_fasciculatus_S2_contig866.16773.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig866.16773.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIG6_ECTSI) HSP 1 Score: 136 bits (342), Expect = 2.290e-35 Identity = 66/71 (92.96%), Postives = 69/71 (97.18%), Query Frame = 1
Query: 1 QFSDHEMVRRAATEALCNLLPHPKMIDHLKLVDTLKLWAAFAQLGGEDPPTAAAALGCLAMAVRDPEVRKS 213
QFSDHE+VRRAATEALCNLLPHPKMIDHL+LVDTLKLWAAFAQLG EDPPTAAAALGCLAMAVRDPEV K+
Sbjct: 923 QFSDHELVRRAATEALCNLLPHPKMIDHLRLVDTLKLWAAFAQLGEEDPPTAAAALGCLAMAVRDPEVAKN 993
BLAST of mRNA_E_fasciculatus_S2_contig866.16773.1 vs.
Match: Uncharacterized (protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CF19_THAPS) HSP 1 Score: 87.0 bits (214), Expect = 4.470e-18 Identity = 42/73 (57.53%), Postives = 54/73 (73.97%), Query Frame = 1
Query: 4 FSDHEMVRRAATEALCNLLPHPKMIDHLKLVDTLKLWAAFAQLGGEDPPTAAAALGCLAMAVRDPEVRKSELK 222
FSDHEMVR+AATE LCN++PHP+M+D+L+ D LK+W AFA E+ A AA+GCLAMAV DP K ++
Sbjct: 1038 FSDHEMVRKAATECLCNMVPHPEMMDYLEKPDNLKIWVAFASDYEENFQCARAAVGCLAMAVPDPNFAKGLIQ 1110
BLAST of mRNA_E_fasciculatus_S2_contig866.16773.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9Z8N1_9STRA) HSP 1 Score: 79.7 bits (195), Expect = 1.430e-16 Identity = 41/67 (61.19%), Postives = 49/67 (73.13%), Query Frame = 1
Query: 4 FSDHEMVRRAATEALCNLLPHPKMIDHLKLVDTLKLWAAFAQLGGEDPPTAAAALGCLAMAVRDPEV 204
FSDH MVRRAATEA+ NL+PHPKM++HL + +KLW AFA E+ A AA GCLAMA +DP V
Sbjct: 110 FSDHLMVRRAATEAMSNLVPHPKMMEHLADPEKMKLWLAFASDFDENFECARAAAGCLAMASQDPNV 176
BLAST of mRNA_E_fasciculatus_S2_contig866.16773.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BUQ0_9STRA) HSP 1 Score: 78.6 bits (192), Expect = 3.760e-16 Identity = 38/63 (60.32%), Postives = 48/63 (76.19%), Query Frame = 1
Query: 1 QFSDHEMVRRAATEALCNLLPHPKMIDHLKLVDTLKLWAAFAQLGGEDPPTAAAALGCLAMAV 189
QFSDHE+VRRAATE + NLLPHPK+++HL+ + +KLW F++ D PTA AA G LAMAV
Sbjct: 36 QFSDHELVRRAATECMTNLLPHPKVVEHLRDPEKIKLWVGFSEDYEADFPTARAAAGALAMAV 98
BLAST of mRNA_E_fasciculatus_S2_contig866.16773.1 vs.
Match: Protein (unc-45 homolog B n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHR7_9STRA) HSP 1 Score: 77.4 bits (189), Expect = 1.070e-14 Identity = 40/81 (49.38%), Postives = 52/81 (64.20%), Query Frame = 1
Query: 4 FSDHEMVRRAATEALCNLLPHPKMIDHLKLVDTLKLWAAFAQLGGEDPPTAAAALGCLAMAVRDPEVRKSELKRGGLYIVA 246
FSDHE+VRRAATEA+ N+LPHP + HL+ D +LW AFA + ED TA AA G +AMA D V + ++ G +A
Sbjct: 931 FSDHELVRRAATEAMVNMLPHPDALQHLRSKDGARLWLAFAGIADEDRATALAAAGGIAMACGDEGVAAALVEAGAPQTLA 1011
BLAST of mRNA_E_fasciculatus_S2_contig866.16773.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E0P8_9STRA) HSP 1 Score: 72.0 bits (175), Expect = 1.790e-14 Identity = 35/60 (58.33%), Postives = 43/60 (71.67%), Query Frame = 1
Query: 4 FSDHEMVRRAATEALCNLLPHPKMIDHLKLVDTLKLWAAFAQLGGEDPPTAAAALGCLAM 183
FSDHE+VR A TEA+CNL+PHP M+ +L + L+LW AFA E+ A AALGCLAM
Sbjct: 7 FSDHELVRTAGTEAMCNLIPHPAMMKYLSDAENLRLWLAFAASYEENFECARAALGCLAM 66
BLAST of mRNA_E_fasciculatus_S2_contig866.16773.1 vs.
Match: Hypothetical (protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X189_9STRA) HSP 1 Score: 73.9 bits (180), Expect = 1.780e-13 Identity = 40/78 (51.28%), Postives = 49/78 (62.82%), Query Frame = 1
Query: 1 QFSDHEMVRRAATEALCNLLPHPKMIDHLKLVDTLKLWAAFAQLGGE-DPPTAAAALGCLAMAVRDPEVRKSELKRGG 231
QFSDH V+RAATEALCN++P MI HL D +KLW A G E D A+AA+GCLAMA D +V ++ G
Sbjct: 881 QFSDHPEVKRAATEALCNMVPDRSMIKHLSRSDKMKLWLALCHDGVENDARLASAAVGCLAMACSDVDVARAVASNNG 958
BLAST of mRNA_E_fasciculatus_S2_contig866.16773.1 vs.
Match: Unc-45 (family protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4WWS7_9STRA) HSP 1 Score: 72.4 bits (176), Expect = 5.970e-13 Identity = 42/81 (51.85%), Postives = 57/81 (70.37%), Query Frame = 1
Query: 1 QFSDHEMVRRAATEALCNLLPHPKMIDHLKLVDT-LKLWAAFAQLG--GEDPPTAAAALGCLAMAVRDPEVRKSELKRGGL 234
QFS+HE+VRRAATEA+CNLLP+ K+I+ + + D ++LW AFA L ED TA AA G LAM + P+V +++GGL
Sbjct: 369 QFSEHELVRRAATEAICNLLPNDKVIEQVFMNDEKVRLWIAFASLEDEAEDFETARAAGGALAMVSQVPQVSWVIMRQGGL 449
BLAST of mRNA_E_fasciculatus_S2_contig866.16773.1 vs.
Match: Uncharacterized (protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YJB5_9STRA) HSP 1 Score: 72.4 bits (176), Expect = 6.190e-13 Identity = 43/88 (48.86%), Postives = 59/88 (67.05%), Query Frame = 1
Query: 1 QFSDHEMVRRAATEALCNLLPHPKMIDHLKL-VDTLKLWAAFAQLGGEDPP--TAAAALGCLAMAVRDPEVRKSELKRGGLYIVALCL 255
QFS+HE+VRRAATEA+CNLLP+ ++I+ + + + L+LW AFA L ED TA AA G LAM + P+V +++GGL A L
Sbjct: 919 QFSEHELVRRAATEAICNLLPNEQVIEQVFMNEEKLRLWLAFASLEEEDEDFETARAASGALAMVSQVPQVSWLLMRQGGLKSFASIL 1006
BLAST of mRNA_E_fasciculatus_S2_contig866.16773.1 vs.
Match: UBC (core domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7KUW8_9STRA) HSP 1 Score: 72.4 bits (176), Expect = 6.210e-13 Identity = 42/81 (51.85%), Postives = 57/81 (70.37%), Query Frame = 1
Query: 1 QFSDHEMVRRAATEALCNLLPHPKMIDHLKL-VDTLKLWAAFAQLG--GEDPPTAAAALGCLAMAVRDPEVRKSELKRGGL 234
QFS+HE+VRRAATEA+CNLLP+ K+I+ + L + ++LW AFA L ED TA AA G LAM + P+V +++GGL
Sbjct: 916 QFSEHELVRRAATEAICNLLPNDKVIEQVFLNEEKVRLWIAFASLEDEAEDFQTARAAGGALAMVSQVPQVSWLLMRKGGL 996 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig866.16773.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig866.16773.1 >prot_E_fasciculatus_S2_contig866.16773.1 ID=prot_E_fasciculatus_S2_contig866.16773.1|Name=mRNA_E_fasciculatus_S2_contig866.16773.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=80bp MVRRAATEALCNLLPHPKMIDHLKLVDTLKLWAAFAQLGGEDPPTAAAALback to top mRNA from alignment at E_fasciculatus_S2_contig866:25802..26059- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig866.16773.1 ID=mRNA_E_fasciculatus_S2_contig866.16773.1|Name=mRNA_E_fasciculatus_S2_contig866.16773.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=258bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig866:25802..26059- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig866:25802..26059- >mRNA_E_fasciculatus_S2_contig866.16773.1 ID=mRNA_E_fasciculatus_S2_contig866.16773.1|Name=mRNA_E_fasciculatus_S2_contig866.16773.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=240bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig866:25802..26059- (Ectocarpus fasciculatus EfasUO2)back to top |