mRNA_E_fasciculatus_S2_contig8656.16769.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8656.16769.1
Unique NamemRNA_E_fasciculatus_S2_contig8656.16769.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8656.16769.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW24_9PHAE)

HSP 1 Score: 419 bits (1078), Expect = 3.930e-130
Identity = 258/314 (82.17%), Postives = 259/314 (82.48%), Query Frame = 1
Query:    4 SVREALSDMLAVAAGFLPPWVDALLSGFPFLLPLDLRLRYFRSLAFGVTRSVAYLQQESSAGDGSGXXXXXXXXXXXXXXXX-----------------------------LGALRRDIVQVSRSQLLQHAEQVMSMYTPSKAVLEFRFAGEKGLGAGVTASFYSAVAAELQRRSVNTKLPMWVDNDSTGDPQNFLAPTSGLFPAPLPVLAGGEXXXXXXXXXXXXXXXXXXXXANGKALAQQRRSVIGRFRFLGRLAARCLMDGQVLPLSLSVDFLRLVLAVVDDHARSQGQVNTA-AAATAVAAAGCVGAGP 855
            SVREALSDMLAVAAGFLPPWVDALLSGFPFLLPLDLRLRYFRSLAFGVTRSVAYLQQESSAGDGSGXXXXXXXXXXXXXXXX                             LGALRRDIVQVSRSQLLQHAEQVMSMYTPSKAVLEFRFAGEKGLGAGVTASFYSAVAAELQRRSVNTKLPMWVDNDSTGDPQ+FLAPTSGLFPAPLPVLAGGE                    A GKALAQQRRSVIGRFRFLGRLAARCLMDGQVLPLSLSVDFLRLVLAVVDDHARSQGQV T  AAATA  AAGCVGAGP
Sbjct: 2904 SVREALSDMLAVAAGFLPPWVDALLSGFPFLLPLDLRLRYFRSLAFGVTRSVAYLQQESSAGDGSGXXXXXXXXXXXXXXXXXXXXXRRTXXXXXXXXXXXXXXXXXXAGGLGALRRDIVQVSRSQLLQHAEQVMSMYTPSKAVLEFRFAGEKGLGAGVTASFYSAVAAELQRRSVNTKLPMWVDNDSTGDPQSFLAPTSGLFPAPLPVLAGGEETGSDGGGAGSSTCVGGG--AKGKALAQQRRSVIGRFRFLGRLAARCLMDGQVLPLSLSVDFLRLVLAVVDDHARSQGQVKTTTAAATAFTAAGCVGAGP 3215          
BLAST of mRNA_E_fasciculatus_S2_contig8656.16769.1 vs.
Match: HECT (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBS8_ECTSI)

HSP 1 Score: 235 bits (600), Expect = 4.330e-66
Identity = 137/195 (70.26%), Postives = 139/195 (71.28%), Query Frame = 1
Query:  271 IVQVSRSQLLQHAEQVMSMYTPSKAVLEFRFAGEKGLGAGVTASFYSAVAAELQRRSVNTKLPMWVDNDSTGDPQNFLAPTSGLFPAPLPVLAGGEXXXXXXXXXXXXXXXXXXXXANGKALAQQRRSVIGRFRFLGRLAARCLMDGQVLPLSLSVDFLRLVLAVVDDHARSQGQVNTAAAATAVAAAGCVGAGP 855
            +  VSRSQLLQHAEQVMSMYTPSKAVLEFRFAGEKGLGAGVTASFYSAVAAELQRRSVNTKLPMWVDNDSTGDPQ+FLAP SGLFPAPLPVLAGGE                    A GKALAQQRRSVIGRFRFLGRLAARCLMDGQ                             T AAATA  AAGCVGAGP
Sbjct: 1423 LADVSRSQLLQHAEQVMSMYTPSKAVLEFRFAGEKGLGAGVTASFYSAVAAELQRRSVNTKLPMWVDNDSTGDPQSFLAPASGLFPAPLPVLAGGEETGSDGGGAGSSACVGGG--AKGKALAQQRRSVIGRFRFLGRLAARCLMDGQT----------------------------TTAAATAFTAAGCVGAGP 1587          
BLAST of mRNA_E_fasciculatus_S2_contig8656.16769.1 vs.
Match: HECT (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNJ7_9STRA)

HSP 1 Score: 193 bits (491), Expect = 5.880e-53
Identity = 123/275 (44.73%), Postives = 160/275 (58.18%), Query Frame = 1
Query:   13 EALSDMLAVAAGFLPPWVDALL-SGFPFLLPLDLRLRYFRSLAFGVTRSVAYLQQESSAGDGSGXXXXXXXXXXXXXXXXLGALRRDIVQVSRSQLLQHAEQVMSMYTPSKA---VLEFRFAGEKGLGAGVTASFYSAVAAELQRRSVNTKLPMWVDNDSTGDPQNFLAPTSGLFPAPLPVLAGGEXXXXXXXXXXXXXXXXXXXXANGKALAQQRRSVIGRFRFLGRLAARCLMDGQVLPLSLSVDFLRLVLAVVDDHARSQGQVNTAAAATAV 825
            +A++D LAVAA  LPPW++A++  G+ FLLPL LR R+F+S +FGV RS+A+LQ +++A                        LRRD+VQVSR  LL+HA+Q+M  YT   +   VLEFRF GE+GLGAGVTASFYSAVAA +  R    KLP+WVD+DS       +   +GLFP PL                             G+    +R +V+ +F+FLGRLAARCL+D QVLPL LS+DF+RLVLAV            +A A TAV
Sbjct:  126 QAMADELAVAANALPPWLEAIVCGGYGFLLPLGLRRRFFQSCSFGVNRSIAWLQTQAAAAAAGASGGQPSGGRL---------LRRDVVQVSRDHLLEHAQQIMLAYTTPTSLASVLEFRFQGERGLGAGVTASFYSAVAAAMHARGALGKLPLWVDSDSLAPVGEPITHPNGLFPMPL-----------------------------GRG-HPRRGAVLAQFKFLGRLAARCLIDSQVLPLPLSLDFMRLVLAVSGGXXXXXXXXXSATAVTAV 361          
BLAST of mRNA_E_fasciculatus_S2_contig8656.16769.1 vs.
Match: Uncharacterized (protein n=3 Tax=Micromonas TaxID=38832 RepID=C1E3P6_MICCC)

HSP 1 Score: 142 bits (359), Expect = 5.480e-34
Identity = 93/253 (36.76%), Postives = 128/253 (50.59%), Query Frame = 1
Query:    1 QSVREALSDMLAVAAGFLPPWVDALLSGFPFLLPLDLRLRYFRSLAFGVTRSVAYLQQESSAGDGSGXXXXXXXXXXXXXXXXLGALRRDIVQVSRSQLLQHAEQVMSMYTPSKAVLEFRFAGEKGLGAGVTASFYSAVAAELQRRSVNTKLPMWVDNDSTGDPQNFLAPTSGLFPAPLPVLAGGEXXXXXXXXXXXXXXXXXXXXANGKALAQQRRSVIGRFRFLGRLAARCLMDGQVLPLSLSVDFLRLVL 759
            Q ++  L D +AVA+G +P W   LL G  FL PL+ RLR+F S AFG +RSV ++Q+ + AG G G                LG L+R+ V V R ++L  A+ +M  +   K+VLE  F  E+G G  VT  FY+ VA  LQ RS NT   MWV ++   D    L  T GLFP PLP                          +    LA++      RFRF+GRL  + L+DG +LPL L+  F+R+ +
Sbjct: 2248 QKLQAQLEDAVAVASGAVPAWTHTLLRGAWFLFPLEARLRHFHSTAFGTSRSVTWVQEHAGAGGGVGGGDGDPARPRGGARR-LGTLKRERVTVRRDRVLADADVLMRHHARHKSVLEVLFTDEEGFGGAVTKEFYNKVADALQLRSENTATMMWVPDEDGDDGPEHLWQTRGLFPHPLP------------------------PRSPESELARR------RFRFIGRLVGKALLDGHILPLPLNPAFVRVAI 2469          
BLAST of mRNA_E_fasciculatus_S2_contig8656.16769.1 vs.
Match: HECT (domain-containing protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1CT83_EMIHU)

HSP 1 Score: 133 bits (335), Expect = 6.450e-31
Identity = 93/276 (33.70%), Postives = 130/276 (47.10%), Query Frame = 1
Query:    7 VREALSDMLAVAAGFLPPWVDALLSGFPFLLPLDLRLRYFRSLAFGVTRSVAYLQQE--------------------------SSAGDGSGXXXXXXXXXXXXXXXXLGALRRDIVQVSRSQLLQHAEQVMSMYTPSKAVLEFRFAGEKGLGAGVTASFYSAVAAELQRRSVNTKLPMWVDNDSTGDPQNFLAPTSGLFPAPLPVLAGGEXXXXXXXXXXXXXXXXXXXXANGKALAQQRRSVIGRFRFLGRLAARCLMDGQVLPLSLSVDFLRLV 756
            +++ L D LAV AG LP W + LL   P L     R RYF + +FGV+R++ + Q++                          S A   +                 +GALR DI +VSR  LL  AE++M ++    + LE +F GE G G+GVT +FYSAVA EL +     +LP+W+   +  DP+ F++    LFP PLP                             +A    R +V GRFRFLGRLAA+   D  ++PL LS+DFL LV
Sbjct:  402 LQQQLGDALAVTAGALPGWCEVLLRRCPDLFSPGSRARYFHATSFGVSRALHWSQEQGVAAVRAAYAEELAALDRARLEAEVSSDAQALAEVVEQVAEVEDRIGRDRMGALRSDIARVSRDALLPSAERLMGLHAGCASALEVQFEGESGFGSGVTQNFYSAVANELLKAKHQAELPLWLAEHAGIDPEGFISHPGSLFPRPLPP----------------------------EAPPAVREAVRGRFRFLGRLAAKACRDDFIVPLPLSLDFLHLV 649          
BLAST of mRNA_E_fasciculatus_S2_contig8656.16769.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FNU8_PYTOL)

HSP 1 Score: 124 bits (312), Expect = 8.530e-28
Identity = 88/263 (33.46%), Postives = 129/263 (49.05%), Query Frame = 1
Query:   19 LSDMLAVAAGFLPPWVDALLSGFPFLLPLDLRLRYFRSLAFGVTRSVAYLQQE-----SSAGDGSGXXXXXXXXXXXXXXXXLGALRRDIVQVSRSQLLQHAEQVMSMYTPSKAVLEFRFAGEKGLGAGVTASFYSAVAAELQ----RRSVNTKLPMWV---DNDSTGDPQNF----LAPTSGLFPAPLPVLAGGEXXXXXXXXXXXXXXXXXXXXANGKALAQQRRSVIGRFRFLGRLAARCLMDGQVLPLSLSVDFLRLVL 759
            LSD+L+V +G  P W D++ S   F  P +LR + F + AFG TRS+ + + E     +++G  S                 +  + ++ V+V+R  LL  AE VM M+   KA+L+  F GEKG G+GVTA+FYSA A  LQ     R+V T+L  W+   +ND   +P       +   +GLFP P    + G                                 +I RFR +GRLA + LMDG++LPL LS  F++LV+
Sbjct: 2085 LSDVLSVCSGIYPEWCDSMASNCRFFFPRELREKLFHATAFGSTRSLHWFRNELNVEDNASGGASAGGEGIAGDGIYNHEITISPIPKERVKVNRESLLSSAEAVMKMHGKRKAILDIVFVGEKGYGSGVTAAFYSATAQALQSVAENRNVETRL--WIPGIENDLPSEPTEMNNEVIRHPNGLFPFPHQKASAG---------------------------------LIERFRMMGRLAGKALMDGRLLPLPLSQQFMKLVI 2312          
BLAST of mRNA_E_fasciculatus_S2_contig8656.16769.1 vs.
Match: HECT-type (E3 ubiquitin transferase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X270_GLOUD)

HSP 1 Score: 122 bits (307), Expect = 3.910e-27
Identity = 84/263 (31.94%), Postives = 125/263 (47.53%), Query Frame = 1
Query:   19 LSDMLAVAAGFLPPWVDALLSGFPFLLPLDLRLRYFRSLAFGVTRSVAYLQQE---------SSAGDGSGXXXXXXXXXXXXXXXXLGALRRDIVQVSRSQLLQHAEQVMSMYTPSKAVLEFRFAGEKGLGAGVTASFYSAVAAELQRRSVNTK--LPMWVDNDSTG-----DPQNFLAPTSGLFPAPLPVLAGGEXXXXXXXXXXXXXXXXXXXXANGKALAQQRRSVIGRFRFLGRLAARCLMDGQVLPLSLSVDFLRLVL 759
            L D+L+V +G  P W D L++   F  P +LR + FRS +FG TRS+ + + +          S+GDG                  +  + ++ V+V R+ +LQ AE VM M+   KA+L+  F GEKG G+GVTA+FYSA A  LQ    N K  L  W++ D +      D  + +   +GLFP P                                   +    ++ RFR +GRLA + LMD ++LPL LS  F++LV+
Sbjct: 2359 LQDVLSVCSGIYPTWCDRLVTQCRFFFPRELREKLFRSTSFGCTRSLHWFRNQLQVEESNVSGSSGDGGNLGGSNGGGGIYNQEITITPIPKERVKVHRANILQSAEAVMKMHGKRKAILDIVFVGEKGYGSGVTAAFYSATAQALQSIEENKKKHLRCWIEGDESSGHDDDDSDDVIRHPNGLFPFPH---------------------------------VKPHVKLLERFRMMGRLAGKALMDERILPLPLSTHFMKLVV 2588          
BLAST of mRNA_E_fasciculatus_S2_contig8656.16769.1 vs.
Match: HECT-type (E3 ubiquitin transferase n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VEQ4_9STRA)

HSP 1 Score: 120 bits (302), Expect = 1.770e-26
Identity = 89/270 (32.96%), Postives = 127/270 (47.04%), Query Frame = 1
Query:    7 VREALSDMLAVAAGFLPPWVDALLSGFPFLLPLDLRLRYFRSLAFGVTRSVAYLQQ-----ESSAGDGSGXXXXXXXXXXXXXXXXLGALRRDIVQVSRSQLLQHAEQVMSMYTPSKAVLEFRFAGEKGLGAGVTASFYSAVAAELQRRSVNTKLPMWVDN-----------DSTGDPQN---FLAPTSGLFPAPLPVLAGGEXXXXXXXXXXXXXXXXXXXXANGKALAQQRRSVIGRFRFLGRLAARCLMDGQVLPLSLSVDFLRLVL 759
            +   + D+L++ +G  PPW D L++   F  P DLR R FRS +FG TRS+ + +      ESSA   SG                +  + ++ V+V R  +LQ AE VM M+   KAVL+  F GEKG G GVTA+FYS +A  LQ  + N K   WV             D+ GD  +    +  ++GLFP P    +                                 R ++ RFR +GRLA + LMD ++LPL LS  F++LV+
Sbjct: 2247 LERQMQDVLSMCSGIYPPWCDELVTHCKFFFPRDLRERLFRSTSFGCTRSLHWFRNQLNIDESSAD--SGVSSMVVGGGIYNQEISISPVPKERVKVYRENILQSAEAVMKMHAKRKAVLDVVFVGEKGYGTGVTAAFYSTIAHALQMITENQKNKFWVPGEDDEAETVHRVDAVGDIADDTPVIRHSNGLFPYPHRTPS---------------------------------RKLVERFRTMGRLAGKALMDERLLPLPLSPQFMKLVV 2481          
BLAST of mRNA_E_fasciculatus_S2_contig8656.16769.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XR97_9STRA)

HSP 1 Score: 117 bits (293), Expect = 2.690e-25
Identity = 94/276 (34.06%), Postives = 136/276 (49.28%), Query Frame = 1
Query:    7 VREALSDMLAVAAGFLPPWVDALLSGFPFLLPLDLRLRYFRSLAFGVTRSVAYLQ---QESSAGDGSGXXXXXXXXXXXXXXXXLGALRRDIVQVSRSQLLQHAEQVMSMYTPSKAVLEFRFAGEKGLGAGVTASFYSAVAAELQRRSVNTKLPMWVD-------------------NDSTGDP---QNFLAPTSGLFPAPLPVLAGGEXXXXXXXXXXXXXXXXXXXXANGKALAQQRRSVIGRFRFLGRLAARCLMDGQVLPLSLSVDFLRLVL 759
            + E L D+L+V +G  P W D +++   F  P +LR R FR+ AFG TRS+ + +   Q    GD +G  XXXXXX        +  + ++ V+V R+ +L  AE VM M+   +A+L+  FAGEKG G+GVTA+FYSA A  LQ    N +  +WV                    +DS GD     + +   +GLFP P                             +  A A+    V+ RFR +GRLA + LMD ++LPL LS  F++LV+
Sbjct: 2368 LEEQLQDVLSVCSGIYPAWCDRMVTQCRFFFPRELRERLFRATAFGCTRSLHWFRSQLQVEEGGDSAGLGXXXXXXILNQEIS-ITPIPKERVKVQRANILGSAEAVMKMHAKRRAILDIVFAGEKGYGSGVTAAFYSATALALQTVDENRRHRLWVSGDESERASSVCGQKTTLATDDSNGDATDDDDVIRHPNGLFPFP-----------------------------HASAPAK----VVERFRMMGRLAGKALMDERLLPLPLSPHFMQLVV 2609          
BLAST of mRNA_E_fasciculatus_S2_contig8656.16769.1 vs.
Match: HECT (E3 ubiquitin ligase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WKM9_9STRA)

HSP 1 Score: 116 bits (290), Expect = 6.270e-25
Identity = 84/269 (31.23%), Postives = 122/269 (45.35%), Query Frame = 1
Query:   19 LSDMLAVAAGFLPPWVDALLSGFPFLLPLDLRLRYFRSLAFGVTRSVAYLQQESSAGDGSGXXXXXXXXXXXXXXXX-LGALRRDIVQVSRSQLLQHAEQVMSMYTPSKAVLEFRFAGEKGLGAGVTASFYSAVAAELQRRSVNTKLPMWVDN-----------------DSTGDPQNFLAPTSGLFP----APLPVLAGGEXXXXXXXXXXXXXXXXXXXXANGKALAQQRRSVIGRFRFLGRLAARCLMDGQVLPLSLSVDFLRLVL 759
            + D+L++ +G  PPW DAL++   F  P +LR + FRS +FG TRS+ + + + +  + S                  +  + ++ V+V R  +LQ AE VM M+   KA+L+  F GEKG G+GVTA+FYS  A  LQ  S N K   W+                   D   D    +  ++GLFP    +P P L                                     I RFR +GRLA + LMD ++LPL LS  FL+LV+
Sbjct: 1313 MQDVLSMCSGIYPPWCDALVTHCKFFFPHELRKKLFRSTSFGCTRSLHWFRNQLNIEESSSDSMSSMVGGGIYNQEISISPIPKERVKVHRGNILQSAEAVMKMHAKRKAILDVVFVGEKGYGSGVTAAFYSTTAHALQVISENEKNRYWIPGEDDEAAAKTNGDEVELGDDIADDAPVIRHSNGLFPYPHRSPTPKL-------------------------------------IERFRMMGRLAGKALMDERLLPLPLSTQFLKLVV 1544          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8656.16769.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized3.930e-13082.17protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
HECT4.330e-6670.26domain-containing protein n=1 Tax=Ectocarpus silic... [more]
HECT5.880e-5344.73domain-containing protein n=1 Tax=Tribonema minus ... [more]
Uncharacterized5.480e-3436.76protein n=3 Tax=Micromonas TaxID=38832 RepID=C1E3P... [more]
HECT6.450e-3133.70domain-containing protein n=2 Tax=Emiliania huxley... [more]
Uncharacterized8.530e-2833.46protein n=1 Tax=Pythium oligandrum TaxID=41045 Rep... [more]
HECT-type3.910e-2731.94E3 ubiquitin transferase n=1 Tax=Globisporangium u... [more]
HECT-type1.770e-2632.96E3 ubiquitin transferase n=2 Tax=Peronospora effus... [more]
Uncharacterized2.690e-2534.06protein n=1 Tax=Pythium brassicum TaxID=1485010 Re... [more]
HECT6.270e-2531.23E3 ubiquitin ligase n=1 Tax=Phytophthora megakarya... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8656contigE_fasciculatus_S2_contig8656:3808..6417 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score236.5
Seed ortholog evalue1.7e-59
Seed eggNOG ortholog2880.D8LBS8
Model size991
KEGG koko:K10590
KEGG Pathwayko04120,map04120
Hectar predicted targeting categorysignal peptide
GOsGO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010604,GO:0016567,GO:0016740,GO:0019222,GO:0019538,GO:0019787,GO:0019941,GO:0030163,GO:0032446,GO:0036211,GO:0042176,GO:0042752,GO:0042753,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0045732,GO:0048518,GO:0050789,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051603,GO:0060255,GO:0061630,GO:0061659,GO:0065007,GO:0070647,GO:0071704,GO:0080090,GO:0140096,GO:1901564,GO:1901565,GO:1901575
Exons5
EggNOG free text desc.protein ubiquitination
EggNOG OGsCOG5021@1,KOG4276@2759
EC2.3.2.26
Cds size963
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8656.16769.1prot_E_fasciculatus_S2_contig8656.16769.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8656 3808..6390 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842522.6113513-CDS-E_fasciculatus_S2_contig8656:3807..40831696842522.6113513-CDS-E_fasciculatus_S2_contig8656:3807..4083Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8656 3808..4083 -
1696842522.6303859-CDS-E_fasciculatus_S2_contig8656:4503..47641696842522.6303859-CDS-E_fasciculatus_S2_contig8656:4503..4764Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8656 4504..4764 -
1696842522.6471708-CDS-E_fasciculatus_S2_contig8656:5501..56751696842522.6471708-CDS-E_fasciculatus_S2_contig8656:5501..5675Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8656 5502..5675 -
1696842522.6562362-CDS-E_fasciculatus_S2_contig8656:6051..60951696842522.6562362-CDS-E_fasciculatus_S2_contig8656:6051..6095Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8656 6052..6095 -
1696842522.6647964-CDS-E_fasciculatus_S2_contig8656:6182..63901696842522.6647964-CDS-E_fasciculatus_S2_contig8656:6182..6390Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8656 6183..6390 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842522.6744995-UTR-E_fasciculatus_S2_contig8656:6390..64171696842522.6744995-UTR-E_fasciculatus_S2_contig8656:6390..6417Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8656 6391..6417 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8656.16769.1

>prot_E_fasciculatus_S2_contig8656.16769.1 ID=prot_E_fasciculatus_S2_contig8656.16769.1|Name=mRNA_E_fasciculatus_S2_contig8656.16769.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=321bp
MLAVAAGFLPPWVDALLSGFPFLLPLDLRLRYFRSLAFGVTRSVAYLQQE
SSAGDGSGGAGGAQGGGGGGAAGGLGALRRDIVQVSRSQLLQHAEQVMSM
YTPSKAVLEFRFAGEKGLGAGVTASFYSAVAAELQRRSVNTKLPMWVDND
STGDPQNFLAPTSGLFPAPLPVLAGGEETGGDGGGGGAGSSTCAGGGANG
KALAQQRRSVIGRFRFLGRLAARCLMDGQVLPLSLSVDFLRLVLAVVDDH
ARSQGQVNTAAAATAVAAAGCVGAGPAADAVSPGTAAASCSEATADDAVG
KEGWKLAAAAAGGAGVEETGR
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mRNA from alignment at E_fasciculatus_S2_contig8656:3808..6417-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8656.16769.1 ID=mRNA_E_fasciculatus_S2_contig8656.16769.1|Name=mRNA_E_fasciculatus_S2_contig8656.16769.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2610bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8656:3808..6417- (Ectocarpus fasciculatus EfasUO2)
CAGTCTGTTCGAGAAGCGCTCTCCGACATGCTCGCAGTCGCGGCCGGCTT CCTGCCCCCCTGGGTGGACGCCCTCCTCTCCGGCTTCCCCTTCCTGCTAC CGCTGGACCTGCGCCTCCGCTACTTCCGATCCCTGGCCTTCGGCGTCACC CGCAGCGTTGCCTACCTCCAGCAGGAGAGCTCCGCTGGCGACGGGAGCGG CGGGGCAGGAGGCGCGCAGGGGGGCGGCGGCGGCGGTGGCGGCGGCGGGC GCGGCGGAGCGGGCAGAAGAACGGGCGCGGGAGGCGGCGGCGGGAGAGCG GGCGGGGGTAGGGCCGGGGGAGGTGCCGCGGGAGGATTGGGTGCACTGCG GCGAGATATCGTGCAGGTGATGCTTTTGAGGTGGCGGATAGAGATGTGGG GACGTGGTTTAGTCATGCTCGCGCGGCAATTTTGGTGCCTTTTCCGGCGC GTTACAGCGGCAGCAGCTAAGGGGTGACGCCACCGTTTTCCCCTCGGTGC CAAGCGCTCCGGTGACTTGTCGCAGCGGCCACAGGTCTGCGTGCGCGCGC GCACGCGCAGGGTGGCTGTGCTTCGTCTGATCGTCGTGTTTTTGCTGGCA GCTGCTGCGCACGCCTACCAGTGGTTGTGTTCTACAAAGGTGGTGGCACC CTGCACATTGCCACTCACCCCCCCTCCCTCCCTCCCTCCGTGACCCCTCG TATGTGCTGTGGTTGTGCTGGCGGACTCGACCGACTTTGCAGGTGTCGCG CTCCCAGCTGCTCCAGCACGCGGAGCAGGTGATGTCGATGTACACGCCTT CCAAGGCCGTGCTGGAGTTCCGCTTCGCGGGCGAGAAGGGCCTCGGCGCC GGCGTTACCGCCAGCTTCTACTCGGCCGTTGCCGCGGAGCTTCAGAGGAG ATCCGTCAACACCAAGGTGTGTCTTTGTTTTTCTAGGGTCTGAGCGGGTC TGAGCGCCGCCAAGGGTACTGCTGCTGCTGCTGCAGGAGCTGTTTGCAGC AGCTGTTGAGCCTTGATTCCCCCCCGTTGACACGTTAACCTTGGTCCTGA CAGTAGAGTCGTCCGTTGTGCGTGCTTTGTGGTGCGATGAGCAGGAAGCA ACCAACCCGGTTTACGGCGGCAAGCGTTGATTGGCGAGCGTCAACGCCCC TCCCCCCCCCTCTGTTAAAACCGTACAGAGCGTCAGGGCTCCACTCCGAT TTGCTTCAATTTTTGTCGAGTGGTCGGTTCGATAGGCCCATAGGCATTGG TCCTTCATGACGAACGGCATTTTTTGGGTGCCTACCGCGTGCGCTTGGTT CGAAACGTTTGGCCCAACGAGCCTTAACATGTTGGTAGCATGAATCATGA ATACCCGATCCTACGCAGTCTCCCCCCCCACCGCTTTACCCTACCGCCCG CGTGTGACGCCAATTCATGTGACCTCCCCCTCCCCCTTGTGTTGCCTGTC AAATTGCCGCTGCTTGTGTGCCTGCTGCTGCTGCTGGCCTGCTGCTGCTG CTGCTGCTGCTGCTGCTGCTGCTGCTGCTGGTGTGACGCCAATTCATGTG ACCTCCCCCTCCCCCTTGTGTTGCCTGTCAAATTGCCGCTGCTTGTGTGC CTGCTGCTGCTGCTGCCGCTGCTTTGTATTGTGCGTCATGGAAAATGTTT TAGCTACCGATGTGGGTCGACAACGACAGCACGGGCGACCCACAAAACTT CCTGGCCCCAACCTCGGGACTGTTTCCAGCACCCCTGCCCGTGCTGGCGG GAGGCGAGGAGACCGGTGGCGATGGAGGCGGCGGTGGCGCTGGGTCGAGC ACGTGTGCCGGGGGGGGCGCCAACGGGAAGGCTCTGGCGCAGCAGCGGAG GTCAGTGATCGGACGGTTCCGGTTCCTGGGGCGCCTGGCGGCTCGGTGCC TGATGGACGGACAGGTGTGTGTCCATGCAGCAGTATTATAGCGTGGTTAA GAAGAGTTGTTGTTGTTGTTGCTGCGGCTGCTGGTGTCAGGGGAGGTTCG CCTCTAGAGTGAACGTATTCAGAGGATGTACGTTGGAAATAGCGTCGTCT GTCTCACAAAACAAATCGAGGAAAAGGGTCGTCCTTGATTTTAACAGCAG CAGCGGTAACGACGCGCACCGTTTGCTCCTCTGCGCGATTTTCCAGATAC GTGTGTACATGCAGCGAATACCCGTGGTGAATTTGAAAAAACGCCTCCAC TTATTTTTGCTCGCCTTGCGATTTACCCACTAAAGGCTGTCCGTTCTGTT CCGTCCCGTACCCGCAACAACTTGCCTTGGGGGGGGGGGCACACAAACCG AAACGCTTTTGGTTCTTTGTTTTTTGGGGTCCAGGTTCTTCCGCTTTCTC TCTCGGTGGACTTCCTACGGCTGGTGCTGGCAGTGGTGGATGACCACGCC CGGTCTCAGGGGCAGGTGAATACGGCTGCCGCCGCTACAGCGGTCGCCGC CGCTGGTTGCGTGGGGGCAGGCCCGGCCGCTGATGCTGTTTCTCCGGGAA CAGCGGCGGCAAGCTGTTCGGAAGCGACCGCCGACGATGCCGTTGGCAAG GAGGGATGGAAATTGGCGGCGGCGGCAGCGGGGGGGGCGGGGGTAGAGGA GACCGGAAGG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8656:3808..6417-

>mRNA_E_fasciculatus_S2_contig8656.16769.1 ID=mRNA_E_fasciculatus_S2_contig8656.16769.1|Name=mRNA_E_fasciculatus_S2_contig8656.16769.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=963bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8656:3808..6417- (Ectocarpus fasciculatus EfasUO2)
ATGCTCGCAGTCGCGGCCGGCTTCCTGCCCCCCTGGGTGGACGCCCTCCT
CTCCGGCTTCCCCTTCCTGCTACCGCTGGACCTGCGCCTCCGCTACTTCC
GATCCCTGGCCTTCGGCGTCACCCGCAGCGTTGCCTACCTCCAGCAGGAG
AGCTCCGCTGGCGACGGGAGCGGCGGGGCAGGAGGCGCGCAGGGGGGCGG
CGGCGGCGGTGCCGCGGGAGGATTGGGTGCACTGCGGCGAGATATCGTGC
AGGTGTCGCGCTCCCAGCTGCTCCAGCACGCGGAGCAGGTGATGTCGATG
TACACGCCTTCCAAGGCCGTGCTGGAGTTCCGCTTCGCGGGCGAGAAGGG
CCTCGGCGCCGGCGTTACCGCCAGCTTCTACTCGGCCGTTGCCGCGGAGC
TTCAGAGGAGATCCGTCAACACCAAGCTACCGATGTGGGTCGACAACGAC
AGCACGGGCGACCCACAAAACTTCCTGGCCCCAACCTCGGGACTGTTTCC
AGCACCCCTGCCCGTGCTGGCGGGAGGCGAGGAGACCGGTGGCGATGGAG
GCGGCGGTGGCGCTGGGTCGAGCACGTGTGCCGGGGGGGGCGCCAACGGG
AAGGCTCTGGCGCAGCAGCGGAGGTCAGTGATCGGACGGTTCCGGTTCCT
GGGGCGCCTGGCGGCTCGGTGCCTGATGGACGGACAGGTTCTTCCGCTTT
CTCTCTCGGTGGACTTCCTACGGCTGGTGCTGGCAGTGGTGGATGACCAC
GCCCGGTCTCAGGGGCAGGTGAATACGGCTGCCGCCGCTACAGCGGTCGC
CGCCGCTGGTTGCGTGGGGGCAGGCCCGGCCGCTGATGCTGTTTCTCCGG
GAACAGCGGCGGCAAGCTGTTCGGAAGCGACCGCCGACGATGCCGTTGGC
AAGGAGGGATGGAAATTGGCGGCGGCGGCAGCGGGGGGGGCGGGGGTAGA
GGAGACCGGAAGG
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