mRNA_E_fasciculatus_S2_contig8652.16767.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8652.16767.1
Unique NamemRNA_E_fasciculatus_S2_contig8652.16767.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8652.16767.1 vs.
Match: GT8 (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KZH8_9PHAE)

HSP 1 Score: 479 bits (1234), Expect = 3.610e-167
Identity = 232/242 (95.87%), Postives = 236/242 (97.52%), Query Frame = 1
Query:  100 MVTSDDFVIGAEVMLHSLREHCGGSTRRRALVVMVTSGVSQLKRQALKAVSDEVIEVEPIAMPIKRAAGHVPAWADVGYTKLRVWGLIQFRRVVYIDADALVMGDLDELFDREVDFAAAPDVFPPDKFNAGVMVVVPSLIVLEDMMSKVEELSSYDGGDTGFLNAYFADWFSRPAAARLPFAYNALRTVYWTTHEKNPGYWEAIGPVKIIHFCSSPKPWEESNRKGDLEMMWWQRYVQMKMG 825
            MVTSDDFVIGAEV+LHSLREHCGGSTRR ALVVMVTSGVSQLKRQALK VSDEVIEVEPIA+PIKRAAGHVPAWADVGYTKLRVWGLIQFRRVVYIDADALVM D+DELFDREVDFAAAPDVFPPDKFNAGVMVVVPSLIVLEDMMSKVEEL SYDGGDTGFLNAYFADWFSRPAAARLPFAYNALRTVYWTTHEKNPGYWEAIGPVKIIHFCSSPKPWEE+NRKGDLEM WWQR VQMKMG
Sbjct:    1 MVTSDDFVIGAEVLLHSLREHCGGSTRRPALVVMVTSGVSQLKRQALKVVSDEVIEVEPIAVPIKRAAGHVPAWADVGYTKLRVWGLIQFRRVVYIDADALVMVDIDELFDREVDFAAAPDVFPPDKFNAGVMVVVPSLIVLEDMMSKVEELPSYDGGDTGFLNAYFADWFSRPAAARLPFAYNALRTVYWTTHEKNPGYWEAIGPVKIIHFCSSPKPWEETNRKGDLEMTWWQRCVQMKMG 242          
BLAST of mRNA_E_fasciculatus_S2_contig8652.16767.1 vs.
Match: Glycosyltransferase, (family GT8 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMF4_9STRA)

HSP 1 Score: 305 bits (781), Expect = 2.610e-98
Identity = 144/248 (58.06%), Postives = 186/248 (75.00%), Query Frame = 1
Query:   73 DERGVAFVTMVTSDDFVIGAEVMLHSLREHCGGSTRRRALVVMVTSGVSQLKRQALKAVSDEVIEVEPIAMP-IKRAAGHVPAWADVGYTKLRVWGLIQFRRVVYIDADALVMGDLDELFDREVDFAAAPDVFPPDKFNAGVMVVVPSLIVLEDMMSKVEELSSYDGGDTGFLNAYFADWFSRPAAARLPFAYNALRTVYWTTHEKNPGYW-EAIGPVKIIHFCSSPKPWEESNRKGDLEMMWWQRYV 810
            D    A+ T+VT+D++ IGAEV+L SL+E    +   R  VV++T  VS   R  L+ V  EV+EV P++M     A+ HV  WA+VGYTKLR+WGL+Q+ ++ YIDAD LV+G ++++F R+VDFAAAPDVFPPDKFNAGV++V P+  + +DMM K+ EL SYDGGDTGFLNAYF +WF+  A ARLPF YNA RT+YW THEK P YW EA+ P+KIIHFCSSPKPWE   +KGDLEM+WW ++V
Sbjct:    4 DSERYAYATLVTTDEYAIGAEVLLQSLKEFSSNAAIHR--VVLITPNVSTSARARLQRVGCEVLEVMPLSMASCPSASDHVSGWAEVGYTKLRIWGLVQYTKIFYIDADCLVVGAVEDVFKRDVDFAAAPDVFPPDKFNAGVLLVKPNEAIFQDMMRKIPELPSYDGGDTGFLNAYFPNWFTYAAEARLPFGYNAQRTMYWMTHEKAPAYWNEAVKPLKIIHFCSSPKPWE-GKKKGDLEMLWWAKFV 248          
BLAST of mRNA_E_fasciculatus_S2_contig8652.16767.1 vs.
Match: Hypothetical (protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0F1_9STRA)

HSP 1 Score: 295 bits (755), Expect = 1.340e-94
Identity = 139/246 (56.50%), Postives = 179/246 (72.76%), Query Frame = 1
Query:   85 VAFVTMVTSDDFVIGAEVMLHSLREHCGGSTRRRALVVMVTSGVSQLKRQALKAVSDEVIEVEPIAMPIKRAAGHVPAWADVGYTKLRVWGLIQFRRVVYIDADALVMGDLDELFDREVDFAAAPDVFPPDKFNAGVMVVVPSLIVLEDMMSKVEELSSYDGGDTGFLNAYFADWFSRPAAARLPFAYNALRTVYWTTHEKNPGYWEAIGPVKIIHFCSSPKPWEESNRKGDLEMMWWQRYVQMKM 822
            +AFVT++T+D F +G EV+L SL +          +V++VT  VSQ  R  L   +  + ++EPI  P   A  HV  W D GY KLR+WGL+++ RVVY+DAD LVM  + ELF+RE DFAAAPDVFPPDKFNAGV+V+ P   V EDM+SK+  L SYDGGDTGFLNAYF DWFS PAA+RLPFA+NA RT++W T  +NPGYW+A GP KIIH+ S+PKPW+   +KG+LEM+WWQ Y++ +M
Sbjct:    1 MAFVTILTNDSFKMGVEVLLFSLEQT--SMQDNVDVVILVTPQVSQFTRNQLVRSNRRIKQIEPIENP--NAEAHVQGWVDSGYAKLRLWGLLEYSRVVYLDADCLVMEPIHELFEREADFAAAPDVFPPDKFNAGVLVLKPDQAVYEDMLSKLNALPSYDGGDTGFLNAYFPDWFSCPAASRLPFAFNAQRTLHWLTAARNPGYWQAAGPHKIIHYSSNPKPWDSGAKKGELEMIWWQYYLRSRM 242          
BLAST of mRNA_E_fasciculatus_S2_contig8652.16767.1 vs.
Match: Hypothetical (protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NMD1_9STRA)

HSP 1 Score: 285 bits (729), Expect = 1.040e-89
Identity = 133/252 (52.78%), Postives = 182/252 (72.22%), Query Frame = 1
Query:   88 AFVTMVTSDDFVIGAEVMLHSLREHCGGSTRRRALVVMVTSGVSQLKRQALKAVSDEVIEVEPIAMPIKRAAGHVPAWADVGYTKLRVWGLIQFRRVVYIDADALVMGDLDELFDREVDFAAAPDVFPPDKFNAGVMVVVPSLIVLEDMMSKVEELSSYDGGDTGFLNAYFADWFSRPAAARLPFAYNALRTVYWTTHEKNPGYWEAIGPVKIIHFCSSPKPWEESNRKGDLEMMWWQRYVQMKMGSVPGMG 843
            A+ T++TS+DFV G EV+LHSL++    +   R L+V+VTS + +  RQ L  ++  + EVEPIA P +R      +W   GYTKLR+W L+++R +VYIDADA+V+ ++DELF  E  FAAAPD+FPPDKFNAGV+V+ P L V + MM  V    ++DGGDTGFLN+YF DWFS PA ARLPF YNA RT++W TH+K PGYW +I P+KI+HF SSPKPW+++  KG++E++WWQ  + ++    PG G
Sbjct:   16 AYATLITSEDFVDGGEVLLHSLKK----TGTDRDLIVVVTSDICKTSRQRLSRIAQRICEVEPIANPFERQDA---SWKGSGYTKLRLWTLVEYRCIVYIDADAVVLSNIDELFFLETHFAAAPDLFPPDKFNAGVLVLRPDLDVFQQMMETVPLAKTHDGGDTGFLNSYFHDWFSYPANARLPFRYNAQRTLFWMTHQKTPGYWNSIKPIKILHFVSSPKPWQDTKSKGEIELIWWQFALDLRS---PGGG 257          
BLAST of mRNA_E_fasciculatus_S2_contig8652.16767.1 vs.
Match: Glycosyltransferase (putative n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CD68_PYTIN)

HSP 1 Score: 265 bits (678), Expect = 8.310e-83
Identity = 131/254 (51.57%), Postives = 175/254 (68.90%), Query Frame = 1
Query:   88 AFVTMVTSDDFVIGAEVMLHSLREHCGGSTRRRALVVMVTSGVS-----QLKRQALKAVSDEVIE---VEPIAMPIKRAAG--HVPAWADVGYTKLRVWGLIQFRRVVYIDADALVMGDLDELFDREVDFAAAPDVFPPDKFNAGVMVVVPSLIVLEDMMSKVEELSSYDGGDTGFLNAYFADWFSRPAAARLPFAYNALRTVYWTTHEKNPGYWEAIGPVKIIHFCSSPKPWEESNRKGDLEMMWWQRYVQMK 819
            A+VT++TSD F IG E + +SL      +  R  LVV+ T  VS     +L+R      S   I    V  I +P    AG  HV  W + GY+KL V+ L +F ++VYIDAD LV+ ++D+LF+RE DFAAAPDVFPPD+FNAGV+VV PS +  E++ +++  L SYDGGDTGFLNA+F DWF   AA+RLPF YNA RT+YW  ++KNPGYW+A+ P+KI+HF S+PKPW++  RKGDLEM+WWQ Y + +
Sbjct:    4 AYVTLLTSDAFSIGVEALAYSLFR----TRPRYPLVVLHTPQVSAACCAKLERFFAALQSQLPISLRRVPDIGIPELTPAGSVHVAGWVNSGYSKLHVFALEEFEKIVYIDADCLVLENVDDLFERETDFAAAPDVFPPDRFNAGVLVVTPSAVRFEELHARINTLKSYDGGDTGFLNAFFRDWFCSDAASRLPFRYNAQRTMYWLVNDKNPGYWDAVQPIKILHFSSNPKPWDDPRRKGDLEMLWWQLYTESR 253          
BLAST of mRNA_E_fasciculatus_S2_contig8652.16767.1 vs.
Match: Unidentified (vitellogenin-linked transcript family member (Uvt-5) n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TND6_9STRA)

HSP 1 Score: 266 bits (679), Expect = 2.620e-82
Identity = 138/277 (49.82%), Postives = 179/277 (64.62%), Query Frame = 1
Query:   88 AFVTMVTSDDFVIGAEVMLHSLREHCGGSTR----RRALVVMVTSGVSQLKRQALKAVSDEVIEVEPIAMPIKRAAGHVPAWADVGYTKLRVWGLIQFRRVVYIDADALVMGDLDELFDREVDFAAAPDVFPPDKFNAGVMVVVPSLIVLEDMMSKVEE--LSSYDGGDTGFLNAYFADWFSRP-----------------------AAARLPFAYNALRTVYWTTHEKNPGYWEAIGP-VKIIHFCSSPKPWEESN--RKGDLEMMWWQRYVQMKM 822
            AFVT++T+D F  GA+V+LHSLR       +    R  +VV+VT  +S+  R+ L+   DE++ VEPIA P    + HV  W D G+TKL++WGL QF RVVY+DAD LV+ D+ ELF  +VDFAAAPD+FPPD+FNAGVM+V P+L V EDM+  V+   L SYDGGDTGFLNA+F  W+S P                       + ARLPF +NA RT++W TH   PGYW A+   VKI+HF SSPKPWE     +KG+LE+ WW  +V+M M
Sbjct:   25 AFVTLLTTDSFGPGAQVLLHSLRTSISAKDKDVAIRPVVVVLVTPEISERTRKGLEGFCDELLTVEPIANPYAENS-HVSGWVDSGFTKLQIWGLTQFERVVYLDADCLVVEDIQELFSADVDFAAAPDIFPPDRFNAGVMLVRPNLDVYEDMLRAVKAGALPSYDGGDTGFLNAFFPKWYSSPLVRTGSTSSSFSTCGGNTMPQKVSMARLPFIWNAQRTLHWMTHAVAPGYWGAVATRVKILHFSSSPKPWEPEGVRKKGELEVKWWTTFVEMHM 300          
BLAST of mRNA_E_fasciculatus_S2_contig8652.16767.1 vs.
Match: Hypothetical (protein n=4 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4N210_GUITH)

HSP 1 Score: 263 bits (672), Expect = 8.310e-82
Identity = 127/245 (51.84%), Postives = 174/245 (71.02%), Query Frame = 1
Query:   88 AFVTMVTSDDFVIGAEVMLHSLREHCGGSTRRRALVVMVTSGVSQLKRQALKAVSDEVIEVEPIAMPIKRAAGHVPAWADVGYTKLRVWGLIQFRRVVYIDADALVMGDLDELFDREVDFAAAPDVFPPDKFNAGVMVVVPSLIVLEDMMSKVEELSSYDGGDTGFLNAYFADWFSRPAAARLPFAYNALRTVYWTTHEKNPGYWEAIGPVKIIHFCSSPKPWEESNRKGDLEMMWWQRYVQMKM 822
            A++TMVTSD +++GA V+ HS+ +     + +R +  MVT  VS   R+AL+     +I VE I+   K ++G + AW   GYTKL +W L +F ++VY+DAD LVM  +D+LF RE  FAAAPD FPPD+FNAGV+VV PSL V EDM+S++  + SYDGGDTGFLN+YF DWF+   A+RLPF YNALRT+YW T +K PGYW A+G V+ +HFCS PKPW+++  KG+LE  WW  + + ++
Sbjct:   12 AYITMVTSDSYLMGALVLAHSILK-TQDKSNQRPICCMVTDEVSADSRKALEQAGLRIIMVESISS--KESSG-IDAWDQSGYTKLNIWKLTEFSKLVYVDADCLVMESIDDLFSRETRFAAAPDTFPPDRFNAGVLVVEPSLEVFEDMISRIGVMHSYDGGDTGFLNSYFHDWFTMGEASRLPFRYNALRTMYWLT-QKKPGYWNAVGAVRCLHFCSFPKPWDQAP-KGELEQKWWVAFAECQL 250          
BLAST of mRNA_E_fasciculatus_S2_contig8652.16767.1 vs.
Match: Aste57867_8336 (protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KJZ5_9STRA)

HSP 1 Score: 260 bits (665), Expect = 5.690e-81
Identity = 120/246 (48.78%), Postives = 171/246 (69.51%), Query Frame = 1
Query:   91 FVTMVTSDDFVIGAEVMLHSLREHCGGSTRRRALVVMVTSGVSQLKRQALKAVSDEVIEVEPI-AMPIKRAAGHVPAWADVGYTKLRVWGLIQFRRVVYIDADALVMGDLDELFDREV---DFAAAPDVFPPDKFNAGVMVVVPSLIVLEDMMSKVEELSSYDGGDTGFLNAYFADWFSRPAAARLPFAYNALRTVYWTTHEKNPGYWEAIGPVKIIHFCSSPKPWEESNRKGDLEMMWWQRYVQM 816
            + T+VTSD+FVIG EV+ +SLR++      +  L+V+ T  +S    Q L+ +         + A+P      HVP W + GYTKL V+ L++F +V YID+DA V+ ++D++F+R++    FAAAPD+FPPD+FNAGV++V PS  +  D+M ++  L SYDGGDTG+LNA+F DWF+  + ARLPFAYNA RT++W TH+  PGYW+A+G VKI+H  SSPKPWE   +KG+LEM+WW  Y +M
Sbjct:    7 YATLVTSDEFVIGVEVLAYSLRKYGA----KFPLLVLYTDQLSAHGVQKLQRIDPATTTPRRVDALPNPNVEVHVPGWVNSGYTKLHVFNLVEFAKVFYIDSDAFVLANVDDMFERDIAPYPFAAAPDIFPPDRFNAGVLLVQPSAALFRDLMDQIALLPSYDGGDTGYLNAFFPDWFTSDSRARLPFAYNAQRTMHWLTHDTKPGYWDAVGRVKILHCSSSPKPWENPAKKGELEMLWWHYYTEM 248          
BLAST of mRNA_E_fasciculatus_S2_contig8652.16767.1 vs.
Match: Glycosyltransferase (putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WEL0_9STRA)

HSP 1 Score: 259 bits (663), Expect = 1.380e-80
Identity = 123/256 (48.05%), Postives = 178/256 (69.53%), Query Frame = 1
Query:   88 AFVTMVTSDDFVIGAEVMLHSLREHCGGSTRRRALVVMVTSGVSQLKRQALKA------VSDEV--IEVEPIAMPIKRA---AGHVPAWADVGYTKLRVWGLIQFRRVVYIDADALVMGDLDELFDREVDFAAAPDVFPPDKFNAGVMVVVPSLIVLEDMMSKVEELSSYDGGDTGFLNAYFADWFSRPAAARLPFAYNALRTVYWTTHEKNPGYWEAIGPVKIIHFCSSPKPWEESNRKGDLEMMWWQRYVQMKM 822
            A+ TM+TSDDF +G E +L+S    C  S+     +++ TS VS+     L        +S+ +  + V+ I +P   +   + HV +W +  YTKL ++GL +++++VYIDADAL++ ++DELF+ +  FAAAPD+FPPD+FNAGV+V+ P   V E++++K + + SYDGGDTGFLN  F+DWF R AA+RLPF YNA RT+YW  + KNPGYW+A+ P+KI+HF SSPKPWEE NR GDLEM+WW  Y + ++
Sbjct:    3 AYATMITSDDFQMGVEALLYSWS--CTHSSIN--FLILYTSQVSKRVLDKLHRFLETLRMSERIKWMRVDSIPIPASSSDPPSSHVESWLNSAYTKLNIFGLEEYQKIVYIDADALILTNIDELFEMDTSFAAAPDIFPPDRFNAGVLVIKPGKDVFENLLAKAKTIKSYDGGDTGFLNLVFSDWFQRDAASRLPFRYNAQRTMYWMVNSKNPGYWKAVEPLKILHFSSSPKPWEEPNRIGDLEMIWWMYYTKAQI 254          
BLAST of mRNA_E_fasciculatus_S2_contig8652.16767.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X313_9STRA)

HSP 1 Score: 259 bits (662), Expect = 1.660e-80
Identity = 118/251 (47.01%), Postives = 176/251 (70.12%), Query Frame = 1
Query:   91 FVTMVTSDDFVIGAEVMLHSLREHCGGSTRRRALVVMVTSGVSQLKRQALKAVSDEVIEVEPI-AMPIKRAAGHVPAWADVGYTKLRVWGLIQFRRVVYIDADALVMGDLDELFDREV---DFAAAPDVFPPDKFNAGVMVVVPSLIVLEDMMSKVEELSSYDGGDTGFLNAYFADWFSRPAAARLPFAYNALRTVYWTTHEKNPGYWEAIGPVKIIHFCSSPKPWEESNRKGDLEMMWWQRYVQMKMGSV 831
            F T+VTSDDFVIG +V+++SLR+H      +  L+V+ T+ +S    Q L+ +      +  + A+P      HVP W + GYTKL V+ L++F  V YID+DA V+ ++DE+ +R++    FAAAPD+FPPD+FNAGV+++ P+  + + ++S+  +  SYDGGDTG+LNA F DW++  A ARLPFAYNA RT++W T+ K PGYW+A+G VK++H  SSPKPWE  ++KGDLEM+WWQ + +M + ++
Sbjct:    4 FATLVTSDDFVIGVQVLVYSLRKHGA----KYPLIVLYTNQLSPCGVQKLQQIYPSTTTIRLVEALPNPNVHVHVPGWINSGYTKLHVFNLVEFSTVFYIDSDAFVLANVDEVLERDIRPYPFAAAPDIFPPDRFNAGVLLLHPNAELFQRLVSQSAQFQSYDGGDTGYLNAVFPDWYTYDAKARLPFAYNAQRTMHWLTYAKKPGYWDAVGDVKVLHCSSSPKPWESPDKKGDLEMLWWQYFTEMNLEAM 250          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8652.16767.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
GT83.610e-16795.87protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5... [more]
Glycosyltransferase,2.610e-9858.06family GT8 n=1 Tax=Tribonema minus TaxID=303371 Re... [more]
Hypothetical1.340e-9456.50protein n=1 Tax=Fibrocapsa japonica TaxID=94617 Re... [more]
Hypothetical1.040e-8952.78protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 ... [more]
Glycosyltransferase8.310e-8351.57putative n=2 Tax=Pythium insidiosum TaxID=114742 R... [more]
Unidentified2.620e-8249.82vitellogenin-linked transcript family member (Uvt-... [more]
Hypothetical8.310e-8251.84protein n=4 Tax=Guillardia theta TaxID=55529 RepID... [more]
Aste57867_83365.690e-8148.78protein n=1 Tax=Aphanomyces stellatus TaxID=120398... [more]
Glycosyltransferase1.380e-8048.05putative n=1 Tax=Albugo laibachii Nc14 TaxID=89038... [more]
Uncharacterized1.660e-8047.01protein n=1 Tax=Aphanomyces euteiches TaxID=100861... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8652contigE_fasciculatus_S2_contig8652:1796..5227 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score498.0
Seed ortholog evalue2.8e-138
Seed eggNOG ortholog2880.D7FV93
Model size1436
KEGG rclassRC00005,RC00171
KEGG koko:K00750
KEGG ReactionR00292,R03681
KEGG Pathwayko00500,ko01100,map00500,map01100
Hectar predicted targeting categoryother localisation
Exons6
EggNOG free text desc.Glycosyl transferase family 8
EggNOG OGsCOG5597@1,KOG1950@2759
Ec32 ortholog descriptionGlycosyltransferase, family GT8
Ec32 orthologEc-14_000240.1
EC2.4.1.186
Cds size855
COG Functional cat.M
CAZyGT8
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01003
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8652.16767.1prot_E_fasciculatus_S2_contig8652.16767.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8652 2377..5227 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842522.3080647-UTR-E_fasciculatus_S2_contig8652:1795..23761696842522.3080647-UTR-E_fasciculatus_S2_contig8652:1795..2376Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8652 1796..2376 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842522.3306117-CDS-E_fasciculatus_S2_contig8652:2376..25081696842522.3306117-CDS-E_fasciculatus_S2_contig8652:2376..2508Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8652 2377..2508 -
1696842522.3512802-CDS-E_fasciculatus_S2_contig8652:2980..31231696842522.3512802-CDS-E_fasciculatus_S2_contig8652:2980..3123Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8652 2981..3123 -
1696842522.3639-CDS-E_fasciculatus_S2_contig8652:3459..36161696842522.3639-CDS-E_fasciculatus_S2_contig8652:3459..3616Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8652 3460..3616 -
1696842522.3759942-CDS-E_fasciculatus_S2_contig8652:3858..39501696842522.3759942-CDS-E_fasciculatus_S2_contig8652:3858..3950Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8652 3859..3950 -
1696842522.387026-CDS-E_fasciculatus_S2_contig8652:4239..43031696842522.387026-CDS-E_fasciculatus_S2_contig8652:4239..4303Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8652 4240..4303 -
1696842522.3982022-CDS-E_fasciculatus_S2_contig8652:4960..52271696842522.3982022-CDS-E_fasciculatus_S2_contig8652:4960..5227Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8652 4961..5227 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8652.16767.1

>prot_E_fasciculatus_S2_contig8652.16767.1 ID=prot_E_fasciculatus_S2_contig8652.16767.1|Name=mRNA_E_fasciculatus_S2_contig8652.16767.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=285bp
MAEAATGIGRGKTPCDDGAGEETPDERGVAFVTMVTSDDFVIGAEVMLHS
LREHCGGSTRRRALVVMVTSGVSQLKRQALKAVSDEVIEVEPIAMPIKRA
AGHVPAWADVGYTKLRVWGLIQFRRVVYIDADALVMGDLDELFDREVDFA
AAPDVFPPDKFNAGVMVVVPSLIVLEDMMSKVEELSSYDGGDTGFLNAYF
ADWFSRPAAARLPFAYNALRTVYWTTHEKNPGYWEAIGPVKIIHFCSSPK
PWEESNRKGDLEMMWWQRYVQMKMGSVPGMGGFI*
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mRNA from alignment at E_fasciculatus_S2_contig8652:1796..5227-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8652.16767.1 ID=mRNA_E_fasciculatus_S2_contig8652.16767.1|Name=mRNA_E_fasciculatus_S2_contig8652.16767.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3432bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8652:1796..5227- (Ectocarpus fasciculatus EfasUO2)
ATGGCGGAAGCAGCAACAGGTATTGGGCGTGGCAAAACTCCCTGCGATGA TGGGGCTGGGGAAGAAACCCCCGATGAAAGAGGAGTTGCGTTCGTGACGA TGGTGACGAGCGACGATTTTGTCATTGGAGCTGAGGTAATGCTCCACTCC CTCCGCGAGCACTGCGGCGGTAGCACGCGACGACGAGCTTTGGTGGTGAT GGTCACCTCTGGAGTGTCACAGCTGAAGAGGCAAGCTCTGAAGGCTGTGT CGGATGAAGTAATAGAGGTGCGACCGCTGTATGCATGCATAGAAGAAGAG GATGCACAACGCACACAGAAGGAGGCGTCTTTCGCGGGACTGTCACATCG AAGCTCTTTGTTGACCTGTTGTATTCCCGGAGGAGTACGGAGCAGGAGCA GTACAGAAGGGTTTCTGTAGGGTGTCATGACAATGTAGATTACACAGGGG TTGTGGACGCTATAACCCAAACTTGCGGCCGCTGGAGGCTCGCGCGCTGG TGGGTCTGAGAGTCTGAGCGAGTCACCATCCCGAGCTTTGAAGGTAGGCA ACAAACGGGAAATTTCAAGCATCCTGGACACCTGGTTTCCATTCCCCAAA CCGCTGCTGCGATTTACAGGAATCACTGACCGAGGACGTTGATACAATAT CACAATCTACTCCGTAGGTCATATGTCTTGCAACAACAGTAGTACATACA ACATATTTTTTTGGGAGTGTTTGGCTTGTTGCCACCGGGTCAACGTACTA CTGCTGTGCACGCCTGCGATTCAGACGGGCTAGCATGGCCCATTCTGTCG AGGCGAGGCACACGCCCACTCCGATAGAAGCAACCAAGTCCACTGGCGAC GAAAACAGCGACAAGCTGTCGCGCTGTGAATGTTCTCGCTTCAATAACTC ACTGAATCGAGCGAATCACGTCAGGTGGAACCAATCGCAATGCCAATTAA ACGGGCGGCGGGGCACGTGCCAGCATGGGCAGATGTAGGTGAGAGCCTCG CGCACTACATTATAGTTGATTATGTACATACCTCCATGGAAAGATCTTCA TCACCGGCCGATTCATGCCCGTTTCTGCCAATCATCGCGAAGCATAGTAT GGAAAAGGTGTCCAATTGGGCCACCGCACACATCCATATGTACACACACG CTTGGCTTGATTCGCTTCAAAGCAGCACGATGAGAACGTGATTCAATCGT CTATTAACAAAATTTCGTGCCCGCCCTTCGTACCACCCTCCTCACCGCCC GCTGCCATGCCGTCACCGCCACCGAAGGGTACACAAAGCTACGCGTGTGG GGCTTGATCCAGTTCAGACGCGTGGTGTACATAGATGCGGATGCTCTCGT GATGGGGGACCTTGACGAGGTAAATCTGGTATGTGAGCATGTGGGGTGCC TCCGGTTGATCGGGAGACAGCACTGGCGATACAGCAGTACTCCTGGTGCG TGAGACTGCTGGTTCGCTCTACTGTTGTGGTTTTCTTTGATCAAGGTAGT CCGGCCAAACGCCCGTACCTGCTCCAGACTATACCCCAAGGTCAATGTTG TCTGCGCTTAGGTCATTAATGTTGTTTGCGCTTTGTACATTGTGCTTGCT TCCGGGAGAAGCTGTTCGATCGGGAGGTGGATTTCGCGGCGGCACCTGAC GTGTTTCCACCAGACAAGTTCAACGCCGGAGTAATGGTTGTGGTGCCGTC GCTGATTGTCCTGGAGGACATGATGTCCAAGGTGGAAGAGCTCTCATCGT ACGACGGCGGAGACACCGGTGAGAGAGCGGGGCGGCGGGAGAAACAAGAG CTTGTGTACTACCGTTTCAGCGCTACTCTAAATTAGAGGGGTGACTTACA TGGAGCCGTGCCCGCGTTGTGGGATTTGAGCACTAGGATCGGAACAGTAG TTCACATTTGGCGGCGGCGGCAGAATGCATCGGGGAGTACATTCAGTCGG AAAGCGGCGTTGAACGCTGCTGGAGCTCTGAGTTTGAACCTGGGTCGCAA CACATATAGCCCTTACCATATCTCGTGCATAAATTCGGCTGCTTACCCTG CTGACCAACCTACATCAGCCTACATCAGCGTTGACACCGCCGTCCCTGTC CCAGGTTTCTTAAACGCCTATTTCGCGGATTGGTTTTCAAGGCCAGCGGC TGCCAGGCTACCGTTCGCGTACAATGCCCTCCGCACGGTCTATTGGACAA CTCACGAAAAGAACCCTGGGTACTGGGAGGCGATCGGCCCCGTGAAGGTG CGCACAGTTCTTTTTGTTTCCACCGGCCGTCCACGGAAGGCGCGCTTCGC CTCTGCCCCCGCCTTCGTCAAATCCATGGCAACATGACGAAGACTTCGTC GTCTGCCAGCTAAAGTCGTCGGGAAAGGAGAGAATGTGGAAATGGCGGTT GCATATGGCGCTTGGCCTCCAATGTGCATGGATGCTCACGCCAACTCGTC GCCTCGCATACTTCAGCACCCTCTCCGAGTTCGGAGTGGTCGAATGGGTT CCACGCTTGTCGAACTTTGTGTTGCCGATTTAACGGCGGTTTCGTTTGAA ACCTCATTATTTGCAGGATTGAGCGCAAGTAGAGCTGTGACCTGGAGTTT CTCATGGTCTCTGCTGTTTGCCGTTTCACATGCAACCTAATCACTGCATT TTTGCGCTGTACTCCACTGACGTACCACGCTATCGACTTGTCGCTGTTGT CTGTTGTTTCTACACACAGATCATTCATTTTTGCAGCAGCCCCAAGCCTT GGGAAGAATCCAATCGCAAGGGAGACCTCGAGATGATGTGGTGGCAGCGA TACGTGCAGATGAAAATGGGCTCAGTACCTGGCATGGGCGGATTTATCTA GTCGCGCGAGCGCTTGTGAAAAGGTTCGATAGAAGGGTACCAGTAGCGTT GTTTCTTTTACGGCAGTTGCTGTTTGGTGTGCTCGGTGCTTCCTCTTCAT GTACGGATATGCACAACAGTGGAGGTACAAAGGGGCAGGTGGATTCTGTT GTCGCGGTGTACACGTTCTGAACGAACTCAGAAAGCTGGGCGTACAAAAT GCTTGACATGGTGAGCACGGCAATCTTTTTGTCTGTTTCAACACTTTTCA CGTTTTTTTGCATCTTGTTCCTGAACCCAAACACCACCGGTCAGTGTATT GTGGATTGTACTATTTTATCAGGTTGGCGAGCGCTGGAACCTAATCCGGA CATGTATTCTCTTTGAGAACACCCCAAAAGGCGAAAATAAAAGACCTGTC GAAACAGGGTGTTTAATGTACGACGAGGCCAATCGTTGCACAAAAAAAGT CTCCCGGGGTGTTGCTCCCCGTTTCCGTGTGTGCCAACTCCAGCAACAAA GATGCATGCACATACCCCCGCGGAACTCACGCTGTCTCACTACAGTACAA CATTTGTAATTGCCAACACCGCTAAGCATGCC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8652:1796..5227-

>mRNA_E_fasciculatus_S2_contig8652.16767.1 ID=mRNA_E_fasciculatus_S2_contig8652.16767.1|Name=mRNA_E_fasciculatus_S2_contig8652.16767.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=855bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8652:1796..5227- (Ectocarpus fasciculatus EfasUO2)
ATGGCGGAAGCAGCAACAGGTATTGGGCGTGGCAAAACTCCCTGCGATGA
TGGGGCTGGGGAAGAAACCCCCGATGAAAGAGGAGTTGCGTTCGTGACGA
TGGTGACGAGCGACGATTTTGTCATTGGAGCTGAGGTAATGCTCCACTCC
CTCCGCGAGCACTGCGGCGGTAGCACGCGACGACGAGCTTTGGTGGTGAT
GGTCACCTCTGGAGTGTCACAGCTGAAGAGGCAAGCTCTGAAGGCTGTGT
CGGATGAAGTAATAGAGGTGGAACCAATCGCAATGCCAATTAAACGGGCG
GCGGGGCACGTGCCAGCATGGGCAGATGTAGGGTACACAAAGCTACGCGT
GTGGGGCTTGATCCAGTTCAGACGCGTGGTGTACATAGATGCGGATGCTC
TCGTGATGGGGGACCTTGACGAGCTGTTCGATCGGGAGGTGGATTTCGCG
GCGGCACCTGACGTGTTTCCACCAGACAAGTTCAACGCCGGAGTAATGGT
TGTGGTGCCGTCGCTGATTGTCCTGGAGGACATGATGTCCAAGGTGGAAG
AGCTCTCATCGTACGACGGCGGAGACACCGGTTTCTTAAACGCCTATTTC
GCGGATTGGTTTTCAAGGCCAGCGGCTGCCAGGCTACCGTTCGCGTACAA
TGCCCTCCGCACGGTCTATTGGACAACTCACGAAAAGAACCCTGGGTACT
GGGAGGCGATCGGCCCCGTGAAGATCATTCATTTTTGCAGCAGCCCCAAG
CCTTGGGAAGAATCCAATCGCAAGGGAGACCTCGAGATGATGTGGTGGCA
GCGATACGTGCAGATGAAAATGGGCTCAGTACCTGGCATGGGCGGATTTA
TCTAG
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