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Homology
BLAST of mRNA_E_fasciculatus_S2_contig8648.16764.1 vs.
Match: 3'-5' (exonuclease domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KYQ8_9PHAE) HSP 1 Score: 131 bits (330), Expect = 1.290e-29 Identity = 63/73 (86.30%), Postives = 65/73 (89.04%), Query Frame = -3
Query: 722 PAAGVGARGERADQEEQQQHPTHLALFARVKGRPFVYCGVMDCVAQKYVWSAGSSLGMVRFTLALREWHEATT 940
PAAGVGA GE ADQE QQQHP HL LFARVKGRPFVYCG +DCVAQ+YVWSAGSSLG VRFTLALREWHEA T
Sbjct: 1278 PAAGVGAGGEGADQE-QQQHPPHLVLFARVKGRPFVYCGAVDCVAQEYVWSAGSSLGRVRFTLALREWHEAAT 1349
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 1 |
| Start | 1 |
| Model size | 1167 |
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Cds size | 738 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1696842521.9015436-UTR-E_fasciculatus_S2_contig8648:2042..2337 | 1696842521.9015436-UTR-E_fasciculatus_S2_contig8648:2042..2337 | Ectocarpus fasciculatus EfasUO2 | UTR | E_fasciculatus_S2_contig8648 2043..2337 + |
| 1696842521.9133887-UTR-E_fasciculatus_S2_contig8648:2391..2502 | 1696842521.9133887-UTR-E_fasciculatus_S2_contig8648:2391..2502 | Ectocarpus fasciculatus EfasUO2 | UTR | E_fasciculatus_S2_contig8648 2392..2502 + |
| 1696842521.952245-UTR-E_fasciculatus_S2_contig8648:3398..3421 | 1696842521.952245-UTR-E_fasciculatus_S2_contig8648:3398..3421 | Ectocarpus fasciculatus EfasUO2 | UTR | E_fasciculatus_S2_contig8648 3399..3421 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1696842521.9270184-CDS-E_fasciculatus_S2_contig8648:2502..2732 | 1696842521.9270184-CDS-E_fasciculatus_S2_contig8648:2502..2732 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig8648 2503..2732 + |
| 1696842521.9378674-CDS-E_fasciculatus_S2_contig8648:2890..3398 | 1696842521.9378674-CDS-E_fasciculatus_S2_contig8648:2890..3398 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig8648 2891..3398 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig8648.16764.1 >prot_E_fasciculatus_S2_contig8648.16764.1 ID=prot_E_fasciculatus_S2_contig8648.16764.1|Name=mRNA_E_fasciculatus_S2_contig8648.16764.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=246bp
MSHSLPGRKLTRNLTELHTSSDHHQQKLRFIAQQQECPRPSPTSPNNNNF
SRQTSLSRPFSRLRKKGSWIHTVTILRGGSSSSPAVTIPRCPLFSAGSCR
RRFFFRGSLVPLPQRQRKPHHSERRSRAPHVLLRDAVHHAAVHERPPLDP
REQCQVRRVLLLLLLIRALASGPYAGCGAPSPLLVVFLRRRGGRLPEDLP
ASTKASLMRPQASAGTSRSRRRRHPPYLRRRRPPPPLKKTTPPCR* back to topmRNA from alignment at E_fasciculatus_S2_contig8648:2043..3421+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E_fasciculatus_S2_contig8648.16764.1 ID=mRNA_E_fasciculatus_S2_contig8648.16764.1|Name=mRNA_E_fasciculatus_S2_contig8648.16764.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1379bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8648:2043..3421+ (Ectocarpus fasciculatus EfasUO2)
CTAGTAGCTCCGATCGGGGCTCGCACACAGGAATTCTGGTCCAGTCTACC
AAAGTACCGCGCCACCGGTAAGCCAATGTTAGCACCCTTGCGTACCCCCG
GGATATGCGGACACCTACAGTCACGGACCCCCTCATCACCAAAAAATAGC
ACCTGAAGCCCCCTTGGGTAGCTCGAGCCTCAAACACATTTGTACAAAGG
ACAAAGACTGAGTAAGGCTGTGTGGACTACAAAGTGACGACACACAAACG
GCAGGGATTCACGAGATAACAAAATGCAGACATCGCTGCGACGACGAACA
GCTACACTCACAAGCGGAACTCGAAACGCGGGTCGTGGTTCTCTCTCCTT
CCAACTTGACGACGGGACCTCCTGAGGGCGTGCCAGCAAATCAAGAACGA
AGGGTTTCTGTGTTCACCTGTTCACACCCCAGAAAGATAGACTGACCTCA
ATGCACGCCAATGTCACATTCCCTACCAGGTAGGAAACTAACCCGGAACT
TGACCGAGCTACACACTTCTTCCGACCACCATCAACAAAAACTGCGGTTT
ATCGCGCAGCAGCAAGAATGTCCACGGCCCTCACCCACCTCGCCAAACAA
CAATAATTTTTCGCGACAAACATCGCTATCGCGCCCCTTTTCCCGGCTCA
GAAAAAAAGGCTCATGGATCCACACCGTCACTATCCTCCGGCGACATATC
ATGCCTCGCCAAAAAGGAGGACCACAAGAGCCCGGCTACGGTGCTGACCT
CAACGTCTGAACCCCTCTTCAACCAACCCGGCAAACGAATTCCCCTCGCC
ATGCACATCCGCATCCACCTCCCCCAACGGACTAGATCTCCCCGCTAGGG
GCGGCAGCAGCAGCTCCCCTGCCGTCACTATTCCGCGGTGCCCCCTCTTC
TCGGCGGGAAGCTGCCGCCGCCGGTTCTTCTTCCGTGGTAGCCTCGTGCC
ACTCCCTCAGCGCCAGCGTAAACCGCACCATTCCGAGCGAAGATCCCGCG
CTCCACACGTACTTCTGCGCGACGCAGTCCATCACGCCGCAGTACACGAA
CGGCCGCCCCTTGACCCTCGCGAACAGTGCCAGGTGCGTCGGGTGTTGCT
GCTGCTCCTCCTGATCCGCGCGCTCGCCTCTGGCCCCTACGCCGGCTGCG
GGGCCCCCTCCCCCCTCCTGGTGGTGTTTCTAAGAAGGCGGGGGGGTCGT
CTTCCGGAAGACCTCCCAGCATCGACGAAGGCGTCCCTGATGCGTCCGCA
AGCCTCTGCAGGAACTTCCCGATCACGTCGCCGCCGCCACCCCCCCTACC
TCCGTCGGCGGCGTCCCCCGCCCCCGTTGAAGAAGACGACACCCCCCTGC
CGTTGAATCTCGGCGACCCCGCCGCCCCC back to topCoding sequence (CDS) from alignment at E_fasciculatus_S2_contig8648:2043..3421+ >mRNA_E_fasciculatus_S2_contig8648.16764.1 ID=mRNA_E_fasciculatus_S2_contig8648.16764.1|Name=mRNA_E_fasciculatus_S2_contig8648.16764.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=738bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8648:2043..3421+ (Ectocarpus fasciculatus EfasUO2)
ATGTCACATTCCCTACCAGGTAGGAAACTAACCCGGAACTTGACCGAGCT
ACACACTTCTTCCGACCACCATCAACAAAAACTGCGGTTTATCGCGCAGC
AGCAAGAATGTCCACGGCCCTCACCCACCTCGCCAAACAACAATAATTTT
TCGCGACAAACATCGCTATCGCGCCCCTTTTCCCGGCTCAGAAAAAAAGG
CTCATGGATCCACACCGTCACTATCCTCCGGGGCGGCAGCAGCAGCTCCC
CTGCCGTCACTATTCCGCGGTGCCCCCTCTTCTCGGCGGGAAGCTGCCGC
CGCCGGTTCTTCTTCCGTGGTAGCCTCGTGCCACTCCCTCAGCGCCAGCG
TAAACCGCACCATTCCGAGCGAAGATCCCGCGCTCCACACGTACTTCTGC
GCGACGCAGTCCATCACGCCGCAGTACACGAACGGCCGCCCCTTGACCCT
CGCGAACAGTGCCAGGTGCGTCGGGTGTTGCTGCTGCTCCTCCTGATCCG
CGCGCTCGCCTCTGGCCCCTACGCCGGCTGCGGGGCCCCCTCCCCCCTCC
TGGTGGTGTTTCTAAGAAGGCGGGGGGGTCGTCTTCCGGAAGACCTCCCA
GCATCGACGAAGGCGTCCCTGATGCGTCCGCAAGCCTCTGCAGGAACTTC
CCGATCACGTCGCCGCCGCCACCCCCCCTACCTCCGTCGGCGGCGTCCCC
CGCCCCCGTTGAAGAAGACGACACCCCCCTGCCGTTGA back to top
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