mRNA_E_fasciculatus_S2_contig8644.16761.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8644.16761.1
Unique NamemRNA_E_fasciculatus_S2_contig8644.16761.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8644.16761.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPY8_ECTSI)

HSP 1 Score: 160 bits (405), Expect = 6.250e-44
Identity = 73/82 (89.02%), Postives = 77/82 (93.90%), Query Frame = 1 
Query:    1 EPPSPWWFNSVTGESTWDCPNVQVGTDAAADGSSLIVNDEGEDGVQPQQQLTVAGGEANDWQMYYDEESADEPIPWWFNSVT 246
            EPPSPWWFNSVTGESTWDCPNVQV TDAA DGSSLIVNDEGEDG QPQ+QL VAGG A+DWQM+YDEESADEPIPWW+NSVT
Sbjct: 5330 EPPSPWWFNSVTGESTWDCPNVQVETDAATDGSSLIVNDEGEDGGQPQRQLAVAGGNASDWQMFYDEESADEPIPWWYNSVT 5411
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8644.16761.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized6.250e-4489.02protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8644contigE_fasciculatus_S2_contig8644:5050..5680 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score162.9
Seed ortholog evalue6.2e-38
Seed eggNOG ortholog2880.D8LPY8
Model size249
KEGG koko:K16280
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.negative regulation of response to water deprivation
EggNOG OGsKOG1327@1,KOG1327@2759
EC2.3.2.27
Cds size246
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842521.7080033-CDS-E_fasciculatus_S2_contig8644:5049..51701696842521.7080033-CDS-E_fasciculatus_S2_contig8644:5049..5170Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8644 5050..5170 +
1696842521.7195675-CDS-E_fasciculatus_S2_contig8644:5554..56791696842521.7195675-CDS-E_fasciculatus_S2_contig8644:5554..5679Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8644 5555..5679 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8644.16761.1prot_E_fasciculatus_S2_contig8644.16761.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8644 5050..5679 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8644.16761.1

>prot_E_fasciculatus_S2_contig8644.16761.1 ID=prot_E_fasciculatus_S2_contig8644.16761.1|Name=mRNA_E_fasciculatus_S2_contig8644.16761.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=82bp
EPPSPWWFNSVTGESTWDCPNVQVGTDAAADGSSLIVNDEGEDGVQPQQQ
LTVAGGEANDWQMYYDEESADEPIPWWFNSVT
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mRNA from alignment at E_fasciculatus_S2_contig8644:5050..5680+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8644.16761.1 ID=mRNA_E_fasciculatus_S2_contig8644.16761.1|Name=mRNA_E_fasciculatus_S2_contig8644.16761.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=631bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8644:5050..5680+ (Ectocarpus fasciculatus EfasUO2)
GAGCCGCCGTCTCCATGGTGGTTCAACTCTGTTACGGGAGAATCGACCTG
GGATTGTCCAAACGTTCAAGTAGGAACCGACGCGGCGGCTGACGGCAGCT
CGCTGATTGTCAACGACGAAGGCGAGTAGATCCTAGAAACCACGGGAGGA
GATTATTTCTCGCTCGACGTAGGTGTCCACATACTGCTTAGCCTTCCCCT
TTTGCCGGTAGGCTCCTACCGCTCTGTTTTGTCTCAACATGGTGTGTCCG
GTCTACGATCGTTGCGGGCGATCCATGGTATTGTTCAGGCACTATCCACG
CGATCGGGTCGCCCTCTCGATCATGCCCACCTCGTCTATGTTCCCTCCTG
CTGTACCTGTTCAAAGCAGTTTCCCGCCGGACATTCGATTCCCTCTTGAG
GCAGAGTATCTGCCCTTTGATTTCTCCATCTGCCCTTTGTGGTTTCGGCT
GAACAAATTGTTTGTGGGCTAAAACGTCTTCCCGTCTACACCCTGTCCAT
TTCAGGCGAAGACGGAGTTCAGCCACAACAGCAACTCACTGTGGCCGGGG
GAGAGGCGAACGACTGGCAAATGTACTACGACGAGGAGTCTGCCGACGAG
CCAATACCGTGGTGGTTCAACTCGGTGACCG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8644:5050..5680+

>mRNA_E_fasciculatus_S2_contig8644.16761.1 ID=mRNA_E_fasciculatus_S2_contig8644.16761.1|Name=mRNA_E_fasciculatus_S2_contig8644.16761.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=246bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8644:5050..5680+ (Ectocarpus fasciculatus EfasUO2)
GAGCCGCCGTCTCCATGGTGGTTCAACTCTGTTACGGGAGAATCGACCTG
GGATTGTCCAAACGTTCAAGTAGGAACCGACGCGGCGGCTGACGGCAGCT
CGCTGATTGTCAACGACGAAGGCGAAGACGGAGTTCAGCCACAACAGCAA
CTCACTGTGGCCGGGGGAGAGGCGAACGACTGGCAAATGTACTACGACGA
GGAGTCTGCCGACGAGCCAATACCGTGGTGGTTCAACTCGGTGACC
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