mRNA_E_fasciculatus_S2_contig8644.16760.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8644.16760.1
Unique NamemRNA_E_fasciculatus_S2_contig8644.16760.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8644.16760.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPY8_ECTSI)

HSP 1 Score: 150 bits (380), Expect = 1.410e-40
Identity = 72/81 (88.89%), Postives = 74/81 (91.36%), Query Frame = 1 
Query:    1 LQSMDRALCMRDRGLWVVNASGLVKADFFGKSDPYAKVFWDGREIGTTAVRHKTLNPVWFTEPTPSRRTKATGGAAAQEEE 243
            LQSMDR LCMRDR LWVVNASGLVKADFFGKSDPYAKVFWDGREIG TAVRHKTLNPVWFTE  P R+ KATGGAAAQEE+
Sbjct: 5082 LQSMDRELCMRDRKLWVVNASGLVKADFFGKSDPYAKVFWDGREIGATAVRHKTLNPVWFTEHAPIRQRKATGGAAAQEED 5162
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BLAST of mRNA_E_fasciculatus_S2_contig8644.16760.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2ANU9_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 6.060e-8
Identity = 30/56 (53.57%), Postives = 36/56 (64.29%), Query Frame = 1 
Query:   10 MDRALCMRDRGLWVVNASGLVKADFFGKSDPYAKVFWDGREIGTTAVRHKTLNPVW 177
            MD+ L  R   L VVNA+ L  ADF GKSDPYA V+W   E+G T    +TL+PVW
Sbjct:   36 MDK-LVRRPLILHVVNATRLPAADFLGKSDPYAVVYWGDEEVGRTEPVKQTLDPVW 90
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BLAST of mRNA_E_fasciculatus_S2_contig8644.16760.1 vs.
Match: Rasa4 (protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812SJQ6_SYMMI)

HSP 1 Score: 57.0 bits (136), Expect = 1.340e-7
Identity = 28/50 (56.00%), Postives = 35/50 (70.00%), Query Frame = 1 
Query:   28 MRDRGLWVVNASGLVKADFFGKSDPYAKVFWDGREIGTTAVRHKTLNPVW 177
            M+D    V+ ASGL KAD FGKSDP+  V W+G EIG + V  K+L+PVW
Sbjct:  334 MKDVEFSVLAASGLGKADKFGKSDPFCVVKWNGVEIGKSEVVKKSLDPVW 383
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BLAST of mRNA_E_fasciculatus_S2_contig8644.16760.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tetrapisispora blattae (strain ATCC 34711 / CBS 6284 / DSM 70876 / NBRC 10599 / NRRL Y-10934 / UCD 77-7) TaxID=1071380 RepID=I2H572_TETBL)

HSP 1 Score: 56.6 bits (135), Expect = 1.850e-7
Identity = 29/59 (49.15%), Postives = 40/59 (67.80%), Query Frame = 1 
Query:   10 MDRALCMRDRG---LWVVNASGLVKADFFGKSDPYAKVFWDGREIGTTAVRHKTLNPVW 177
            +DR+  + D G   L +++A GL+ AD  GKSDP+A+VF DGR+   T V  KTL+PVW
Sbjct: 1119 LDRSESILDTGYLHLKIISAEGLMSADRNGKSDPFARVFVDGRKAFKTEVVKKTLSPVW 1177
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BLAST of mRNA_E_fasciculatus_S2_contig8644.16760.1 vs.
Match: C2 (domain-containing protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R1N7_THAOC)

HSP 1 Score: 52.4 bits (124), Expect = 5.570e-6
Identity = 32/64 (50.00%), Postives = 39/64 (60.94%), Query Frame = 1 
Query:    7 SMDRALCMRDRGLWVVNASGLVKAD--FFGK---SDPYAKVFWDGREIGTTAVRHKTLNPVWFT 183
            S D +L      L V +ASGLV  D   FGK   SDPYAKV++  + +G TAV+ KTL PVW T
Sbjct:    7 STDESLAGLRVILTVHSASGLVAKDRNMFGKKTSSDPYAKVYFGDKAVGKTAVKKKTLEPVWET 70
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BLAST of mRNA_E_fasciculatus_S2_contig8644.16760.1 vs.
Match: Protein-tyrosine-phosphatase (n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EA37_BRELC)

HSP 1 Score: 52.0 bits (123), Expect = 7.860e-6
Identity = 23/45 (51.11%), Postives = 31/45 (68.89%), Query Frame = 1 
Query:   43 LWVVNASGLVKADFFGKSDPYAKVFWDGREIGTTAVRHKTLNPVW 177
            L V+ A  LV AD  GKSDP+ +VF+DG+E+ T+    K+LNP W
Sbjct:    3 LKVIRAESLVSADANGKSDPFVRVFYDGKELATSPRVKKSLNPRW 47
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BLAST of mRNA_E_fasciculatus_S2_contig8644.16760.1 vs.
Match: Protein-tyrosine-phosphatase (n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RFR1_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 2.030e-5
Identity = 25/59 (42.37%), Postives = 36/59 (61.02%), Query Frame = 1 
Query:   16 RALCMRDRGLWVVNASGLVKADFFGKSDPYAKVFWDGREIGTTAVRHKTLNPVWFTEPT 192
            R L  +D G  V+ A  L  AD  GKSDP+ KV++DG+E+ ++    ++LNP W  E T
Sbjct: 1652 RTLLAKDDG--VIRAEALASADMNGKSDPFVKVWYDGKEVASSPRVKRSLNPRWDFEVT 1708
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BLAST of mRNA_E_fasciculatus_S2_contig8644.16760.1 vs.
Match: Myotubularin-like (protein n=12 Tax=Phytophthora TaxID=4783 RepID=D0NY05_PHYIT)

HSP 1 Score: 50.1 bits (118), Expect = 3.760e-5
Identity = 20/45 (44.44%), Postives = 30/45 (66.67%), Query Frame = 1 
Query:   43 LWVVNASGLVKADFFGKSDPYAKVFWDGREIGTTAVRHKTLNPVW 177
            L ++ A  L  AD  GKSDP+ +VF+DG+E+G +    ++LNP W
Sbjct:   43 LKIIRAEALASADLNGKSDPFVRVFYDGKEVGASHRVKRSLNPRW 87
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BLAST of mRNA_E_fasciculatus_S2_contig8644.16760.1 vs.
Match: C2 (domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C3J0_PYTIN)

HSP 1 Score: 48.9 bits (115), Expect = 4.660e-5
Identity = 23/48 (47.92%), Postives = 30/48 (62.50%), Query Frame = 1 
Query:   49 VVNASGLVKADFFGKSDPYAKVFWDGREIGTTAVRHKTLNPVWFTEPT 192
            VV A  L  +D  GKSDP+A+V +DG+E+G T    + LNP W  E T
Sbjct:    5 VVRAENLPASDMNGKSDPFARVLYDGKEVGATPRVKRCLNPRWDHELT 52
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BLAST of mRNA_E_fasciculatus_S2_contig8644.16760.1 vs.
Match: Synaptotagmin-1 (n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GWT6_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 6.950e-5
Identity = 21/43 (48.84%), Postives = 28/43 (65.12%), Query Frame = 1 
Query:   49 VVNASGLVKADFFGKSDPYAKVFWDGREIGTTAVRHKTLNPVW 177
            VV A+GL +AD FG+SDPY  +  +G  +G T V  +TL P W
Sbjct:  493 VVRATGLARADRFGRSDPYCVISLNGSRLGHTHVERRTLEPEW 535
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8644.16760.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
Uncharacterized1.410e-4088.89protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Hypothetical6.060e-853.57protein (Fragment) n=1 Tax=Dictyocha speculum TaxI... [more]
Rasa41.340e-756.00protein (Fragment) n=1 Tax=Symbiodinium microadria... [more]
Uncharacterized1.850e-749.15protein n=1 Tax=Tetrapisispora blattae (strain ATC... [more]
C25.570e-650.00domain-containing protein (Fragment) n=1 Tax=Thala... [more]
Protein-tyrosine-phosphatase7.860e-651.11n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EA3... [more]
Protein-tyrosine-phosphatase2.030e-542.37n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=... [more]
Myotubularin-like3.760e-544.44protein n=12 Tax=Phytophthora TaxID=4783 RepID=D0N... [more]
C24.660e-547.92domain-containing protein n=1 Tax=Pythium insidios... [more]
Synaptotagmin-16.950e-548.84n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8644contigE_fasciculatus_S2_contig8644:3164..4021 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score147.5
Seed ortholog evalue2.6e-33
Seed eggNOG ortholog2880.D8LPY8
Model size244
KEGG koko:K16280
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.negative regulation of response to water deprivation
EggNOG OGsKOG1327@1,KOG1327@2759
EC2.3.2.27
Cds size234
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842521.6443355-UTR-E_fasciculatus_S2_contig8644:3163..31721696842521.6443355-UTR-E_fasciculatus_S2_contig8644:3163..3172Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8644 3164..3172 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842521.6594841-CDS-E_fasciculatus_S2_contig8644:3172..32741696842521.6594841-CDS-E_fasciculatus_S2_contig8644:3172..3274Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8644 3173..3274 +
1696842521.6706846-CDS-E_fasciculatus_S2_contig8644:3889..40211696842521.6706846-CDS-E_fasciculatus_S2_contig8644:3889..4021Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8644 3890..4021 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8644.16760.1prot_E_fasciculatus_S2_contig8644.16760.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8644 3173..4021 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8644.16760.1

>prot_E_fasciculatus_S2_contig8644.16760.1 ID=prot_E_fasciculatus_S2_contig8644.16760.1|Name=mRNA_E_fasciculatus_S2_contig8644.16760.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=78bp
MDRALCMRDRGLWVVNASGLVKADFFGKSDPYAKVFWDGREIGTTAVRHK
TLNPVWFTEPTPSRRTKATGGAAAQEEE
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mRNA from alignment at E_fasciculatus_S2_contig8644:3164..4021+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8644.16760.1 ID=mRNA_E_fasciculatus_S2_contig8644.16760.1|Name=mRNA_E_fasciculatus_S2_contig8644.16760.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=858bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8644:3164..4021+ (Ectocarpus fasciculatus EfasUO2)
CTACAGTCCATGGACCGGGCGCTGTGCATGCGCGACCGTGGGCTATGGGT
GGTGAATGCGTCCGGTCTGGTGAAAGCTGACTTTTTTGGGAAGAGCGATC
CCTACGCCAAGGTATCCAGTCTTTGGCCATAGCTCCAAGAGCGGTATCGT
ATTCTACGGGAGTTTTTTTCTAGAGCACAACAAGGTAGAAGTTCAAGAAC
GTCCGGCAAAAGCTGAGCGCATGCCAACGACCGCCTTCTTCCGCGATGCA
TTGCAGCCAGCACGCCGGTCGAGACCCAACTGGCGGTTCTTTACATCAAA
TTGTACACACTGCACCGTCCGGGATTTGATGGAGCCTCTTTCCGTTCGTT
TTTGCTACTCTTTGCCTTGATGCACAGTTTGTGTTCACTTCCCCGCGCCG
GGTCAGGCATATTTTCATAACGTGACATGGTGTGCAACGTCATCCGCGCC
TTGCCTCTGCAATACTCATATCGTCATGTCTTAGGTTTTGGATTCTCCAC
ATTGGTAGTAATACCAAGATTGTTTGGTAAGGCCTCGACTCACAGAACCC
CCAAGAAAAATCCTGGAACTCGGATTCTACAGGTTTGGGTCACGGTGGTG
GTCCCCGCGTGTGCCTGGCATTAGAATACACAAGGCGTGCCGTAGATCCT
TTCCAGGAGCGCTCGATATAAGAGATGCCTTCCCCATGTTCTTTTTCTCA
CGAATCCCGTGTCATTTTAAAAACAGGTGTTCTGGGACGGTCGCGAGATC
GGCACAACCGCCGTCCGACATAAAACCCTGAACCCGGTTTGGTTCACGGA
ACCCACCCCAAGCAGGCGGACGAAAGCAACAGGCGGCGCTGCGGCACAGG
AGGAAGAA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8644:3164..4021+

>mRNA_E_fasciculatus_S2_contig8644.16760.1 ID=mRNA_E_fasciculatus_S2_contig8644.16760.1|Name=mRNA_E_fasciculatus_S2_contig8644.16760.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=234bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8644:3164..4021+ (Ectocarpus fasciculatus EfasUO2)
ATGGACCGGGCGCTGTGCATGCGCGACCGTGGGCTATGGGTGGTGAATGC
GTCCGGTCTGGTGAAAGCTGACTTTTTTGGGAAGAGCGATCCCTACGCCA
AGGTGTTCTGGGACGGTCGCGAGATCGGCACAACCGCCGTCCGACATAAA
ACCCTGAACCCGGTTTGGTTCACGGAACCCACCCCAAGCAGGCGGACGAA
AGCAACAGGCGGCGCTGCGGCACAGGAGGAAGAA
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