mRNA_E_fasciculatus_S2_contig8634.16753.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8634.16753.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6G2_ECTSI) HSP 1 Score: 239 bits (609), Expect = 2.570e-73 Identity = 106/133 (79.70%), Postives = 124/133 (93.23%), Query Frame = 3
Query: 33 QGRQTTSVHVRMTSVADDQHWFKRAMKDYNETRASDLVVINFGARYHNTAEGDEAFKRDVFSVLDDMAEVGETATVVWREIAPTHFPAENGTYDAFVDIGLGNTACCTGTPVKVLDRNAWVQNYLRDNGLSDK 431
+ QTTSVHVRMTS ADDQHW +RA++DYNETRASD+VV+NFGA Y +T EG+E+FKRDV S+LDDMAE+GETATVVWREIAPTHFPAENGTY+AFV++ LGNTACCTGTPVKVLDRNAWV++YLR+NGLSD+
Sbjct: 179 KANQTTSVHVRMTSAADDQHWLRRALRDYNETRASDVVVVNFGAHYRSTPEGEESFKRDVSSILDDMAEIGETATVVWREIAPTHFPAENGTYEAFVELDLGNTACCTGTPVKVLDRNAWVEDYLRENGLSDR 311
BLAST of mRNA_E_fasciculatus_S2_contig8634.16753.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEC7_9PHAE) HSP 1 Score: 231 bits (589), Expect = 2.760e-69 Identity = 101/133 (75.94%), Postives = 121/133 (90.98%), Query Frame = 3
Query: 33 QGRQTTSVHVRMTSVADDQHWFKRAMKDYNETRASDLVVINFGARYHNTAEGDEAFKRDVFSVLDDMAEVGETATVVWREIAPTHFPAENGTYDAFVDIGLGNTACCTGTPVKVLDRNAWVQNYLRDNGLSDK 431
+ QTTSVHVRMTS ADD+HW +RA++DYNETRASD+VV+NFG Y +T EG+E+FKRDV S+LDDMAE+GETATVVWREIAPTHFP ENGTY++FV++ LGN ACCTGTPVKVLDRNAWV++Y+RDNGLSD+
Sbjct: 268 KANQTTSVHVRMTSTADDRHWLRRALRDYNETRASDVVVVNFGPHYRSTPEGEESFKRDVSSILDDMAEIGETATVVWREIAPTHFPGENGTYESFVELDLGNNACCTGTPVKVLDRNAWVEDYVRDNGLSDR 400
BLAST of mRNA_E_fasciculatus_S2_contig8634.16753.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LML8_ECTSI) HSP 1 Score: 221 bits (562), Expect = 9.150e-69 Identity = 97/122 (79.51%), Postives = 114/122 (93.44%), Query Frame = 3
Query: 66 MTSVADDQHWFKRAMKDYNETRASDLVVINFGARYHNTAEGDEAFKRDVFSVLDDMAEVGETATVVWREIAPTHFPAENGTYDAFVDIGLGNTACCTGTPVKVLDRNAWVQNYLRDNGLSDK 431
MTS ADDQHW +RA++DYNETRASD+VV+NFGA Y +T EG+E+FKRDV S+LDDMAE+GETATVVWREIAPTHFPAENGTY+AFV++ LGNTACCTGTPVK LDRNAWV++YLR+NGLSD+
Sbjct: 1 MTSAADDQHWLRRALRDYNETRASDVVVVNFGAHYRSTPEGEESFKRDVSSILDDMAEIGETATVVWREIAPTHFPAENGTYEAFVELDLGNTACCTGTPVKFLDRNAWVEDYLRENGLSDR 122
BLAST of mRNA_E_fasciculatus_S2_contig8634.16753.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXJ3_ECTSI) HSP 1 Score: 173 bits (438), Expect = 6.640e-47 Identity = 78/128 (60.94%), Postives = 97/128 (75.78%), Query Frame = 3
Query: 51 SVHVRMTSVADDQHWFKRAMKDYNETRASDLVVINFGARYHNTAEGDEAFKRDVFSVLDDMAEVGETATVVWREIAPTHFPAENGTYDAFVDI-GLGNTACCTGTPVKVLDRNAWVQNYLRDNGLSDK 431
SVH+RM S +HW RA+ D+NETRASD+ V+NFG YH+ E D++FKRDVF +LD+MA +GE ATVVWREIAPTHFPA NG++DAF + A CTGTP +V DRN WV+NY+RDNGL D+
Sbjct: 283 SVHMRMLSKPSGEHWLTRAVSDFNETRASDIFVVNFGGHYHDFPEEDDSFKRDVFPILDEMAVLGEKATVVWREIAPTHFPAVNGSFDAFDGLESKDRKASCTGTPPEVFDRNVWVENYVRDNGLEDR 410
BLAST of mRNA_E_fasciculatus_S2_contig8634.16753.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLA9_9PHAE) HSP 1 Score: 171 bits (432), Expect = 6.080e-46 Identity = 78/128 (60.94%), Postives = 96/128 (75.00%), Query Frame = 3
Query: 51 SVHVRMTSVADDQHWFKRAMKDYNETRASDLVVINFGARYHNTAEGDEAFKRDVFSVLDDMAEVGETATVVWREIAPTHFPAENGTYDAFVDI-GLGNTACCTGTPVKVLDRNAWVQNYLRDNGLSDK 431
SVH+RM S +HW RA+ D+NETRASD+ V+NFG YH+ E D++FKRDVF +LD+MA +GE ATVVWREIAPTHFPA NG++DAF + A CTGTP +V DRN WV+NYLR NGL D+
Sbjct: 294 SVHMRMLSKPSGEHWLTRAVSDFNETRASDIFVVNFGGHYHDFPEEDDSFKRDVFPILDEMAVLGEKATVVWREIAPTHFPAVNGSFDAFDCLESKDRKASCTGTPPEVFDRNVWVENYLRTNGLEDR 421
BLAST of mRNA_E_fasciculatus_S2_contig8634.16753.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKZ2_ECTSI) HSP 1 Score: 161 bits (407), Expect = 2.470e-45 Identity = 72/125 (57.60%), Postives = 91/125 (72.80%), Query Frame = 3
Query: 60 VRMTSVADDQHWFKRAMKDYNETRASDLVVINFGARYHNTAEGDEAFKRDVFSVLDDMAEVGETATVVWREIAPTHFPAENGTYDAFVDIGLGN-TACCTGTPVKVLDRNAWVQNYLRDNGLSDK 431
+RM S +HW +A D+NETRASD+ V+NFG YH+ E DE FK D+ VL DMA +G+ ATV+WREIAPTHFPA NG+YD++ D+ + T CTGTP KV DRN WV+NY+RDNGL D+
Sbjct: 1 MRMLSRPRGEHWLLKAASDFNETRASDVFVVNFGGHYHDIPEDDEEFKTDMIPVLQDMAVLGQNATVIWREIAPTHFPAANGSYDSYADLDAKDLTPRCTGTPPKVFDRNEWVENYVRDNGLEDR 125
BLAST of mRNA_E_fasciculatus_S2_contig8634.16753.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FL04_ECTSI) HSP 1 Score: 168 bits (425), Expect = 7.910e-45 Identity = 75/128 (58.59%), Postives = 94/128 (73.44%), Query Frame = 3
Query: 51 SVHVRMTSVADDQHWFKRAMKDYNETRASDLVVINFGARYHNTAEGDEAFKRDVFSVLDDMAEVGETATVVWREIAPTHFPAENGTYDAFVDIGLGN-TACCTGTPVKVLDRNAWVQNYLRDNGLSDK 431
SVH+RM S +HW +A D+NETRASD+ V+NFG YH+ E DE FK D+ VL DMA +G+ ATV+WREIAPTHFPA NG+YD++ D+ + T CTGTP KV DRN WV+NY+RDNGL D+
Sbjct: 306 SVHMRMLSRPSGEHWLLKAASDFNETRASDVFVVNFGGHYHDIPEDDEEFKTDMIPVLQDMAVLGQNATVIWREIAPTHFPAANGSYDSYADLDAKDLTPRCTGTPPKVFDRNEWVENYVRDNGLEDR 433 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8634.16753.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig8634.16753.1 >prot_E_fasciculatus_S2_contig8634.16753.1 ID=prot_E_fasciculatus_S2_contig8634.16753.1|Name=mRNA_E_fasciculatus_S2_contig8634.16753.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=264bp MTSVADDQHWFKRAMKDYNETRASDLVVINFGARYHNTAEGDEAFKRDVFback to top mRNA from alignment at E_fasciculatus_S2_contig8634:11..3295+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig8634.16753.1 ID=mRNA_E_fasciculatus_S2_contig8634.16753.1|Name=mRNA_E_fasciculatus_S2_contig8634.16753.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3285bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8634:11..3295+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8634:11..3295+ >mRNA_E_fasciculatus_S2_contig8634.16753.1 ID=mRNA_E_fasciculatus_S2_contig8634.16753.1|Name=mRNA_E_fasciculatus_S2_contig8634.16753.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=792bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8634:11..3295+ (Ectocarpus fasciculatus EfasUO2)back to top |