mRNA_E_fasciculatus_S2_contig8616.16739.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8616.16739.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4N3_9PHAE) HSP 1 Score: 306 bits (785), Expect = 6.770e-94 Identity = 154/157 (98.09%), Postives = 156/157 (99.36%), Query Frame = 1
Query: 1 LSWPKHVLPLVKQRRLDSGLHEDPAAAWARQAGAERGLLSSEQCTAALGSLERVLRQQRDVFVAFMDPVTDEIAPNYSMEIALPIHLGLIQQRLQRKYYRRAEGVFADLRLLETNCRTYNPAGSLIVDQCRSAMNMAEGALRNSLRSSGGVGVPRSG 471
LSWPKHVLPLVKQRRLD+GLHEDPAAAWARQAGAERGLLSSEQCTAAL SLERVLRQQRDVFVAFMDPVTDEIAPNYSMEIALPIHLGLIQQRLQRKYYRRAEGVFADLRLLETNCRTYNPAGSLIVDQCR+AMNMAEGALRNSLRSSGGVGVPRSG
Sbjct: 754 LSWPKHVLPLVKQRRLDAGLHEDPAAAWARQAGAERGLLSSEQCTAALASLERVLRQQRDVFVAFMDPVTDEIAPNYSMEIALPIHLGLIQQRLQRKYYRRAEGVFADLRLLETNCRTYNPAGSLIVDQCRAAMNMAEGALRNSLRSSGGVGVPRSG 910
BLAST of mRNA_E_fasciculatus_S2_contig8616.16739.1 vs.
Match: WD (repeat domain-containing protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZH6_ECTSI) HSP 1 Score: 308 bits (788), Expect = 2.040e-93 Identity = 155/157 (98.73%), Postives = 156/157 (99.36%), Query Frame = 1
Query: 1 LSWPKHVLPLVKQRRLDSGLHEDPAAAWARQAGAERGLLSSEQCTAALGSLERVLRQQRDVFVAFMDPVTDEIAPNYSMEIALPIHLGLIQQRLQRKYYRRAEGVFADLRLLETNCRTYNPAGSLIVDQCRSAMNMAEGALRNSLRSSGGVGVPRSG 471
LSWPKHVLPLVKQRRLDSGLHEDPAAAWARQAGAERGLLSSEQCTAAL SLERVLRQQRDVFVAFMDPVTDEIAPNYSMEIALPIHLGLIQQRLQRKYYRRAEGVFADLRLLETNCRTYNPAGSLIVDQCR+AMNMAEGALRNSLRSSGGVGVPRSG
Sbjct: 3744 LSWPKHVLPLVKQRRLDSGLHEDPAAAWARQAGAERGLLSSEQCTAALASLERVLRQQRDVFVAFMDPVTDEIAPNYSMEIALPIHLGLIQQRLQRKYYRRAEGVFADLRLLETNCRTYNPAGSLIVDQCRAAMNMAEGALRNSLRSSGGVGVPRSG 3900
BLAST of mRNA_E_fasciculatus_S2_contig8616.16739.1 vs.
Match: Bromo (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBA1_9STRA) HSP 1 Score: 88.6 bits (218), Expect = 1.640e-18 Identity = 49/121 (40.50%), Postives = 73/121 (60.33%), Query Frame = 1
Query: 70 PAAAWARQAGAERGLLSSEQCTAALGSLERVLRQQRDVFVAFMDPVTDEIAPNYSMEIALPIHLGLIQQRLQRKYYRRAEGVFADLRLLETNCRTYNPAGSLIVDQCRSAMNMAEGALRNS 432
P A A++ + + LSS+ A +L R+ Q+ D+ F D VTD++AP YS E+ LP+HL LI RL+ +YYR A+ V ADL L+ +NC +N A + I Q RS + MA A++ +
Sbjct: 55 PRAKNAKRKSSSKNELSSQAQAAMATALTRLQEQEPDLAALFDDEVTDDVAPGYSTEVPLPMHLQLIIGRLEHQYYRHADAVAADLALIASNCELFNRADAPISAQARSFVGMAVAAVQRA 175
BLAST of mRNA_E_fasciculatus_S2_contig8616.16739.1 vs.
Match: Uncharacterized (protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A932_PLAHL) HSP 1 Score: 59.3 bits (142), Expect = 7.830e-7 Identity = 31/68 (45.59%), Postives = 42/68 (61.76%), Query Frame = 1
Query: 193 FMDPVTDEIAPNYSMEIALPIHLGLIQQRLQRKYYRRAEGVFADLRLLETNCRTYNPAGSLIVDQCRS 396
FM PV ++ +Y + IA P+ L IQQRL+ YYR+ E AD++LL TNC TYN + S I R+
Sbjct: 1721 FMYPVDEDTFIDYPISIANPMDLTKIQQRLRLGYYRQVEAFVADVKLLSTNCETYNISSSPISQNSRN 1788
BLAST of mRNA_E_fasciculatus_S2_contig8616.16739.1 vs.
Match: Hypothetical (protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RJL3_9STRA) HSP 1 Score: 58.9 bits (141), Expect = 1.040e-6 Identity = 33/88 (37.50%), Postives = 47/88 (53.41%), Query Frame = 1
Query: 193 FMDPVTDEIAPNYSMEIALPIHLGLIQQRLQRKYYRRAEGVFADLRLLETNCRTYNPAGSLIVDQCRSAMNMAEGALRNSLRSSGGVG 456
F++PVTD+ AP+Y IALP+ L I RLQ YYR E V D+ L+ NC YNP S D + + A++ + ++ G
Sbjct: 1312 FVEPVTDQEAPDYGELIALPMDLRTILGRLQSGYYRHMEMVHRDVDLIYQNCFKYNPQPSEFCDLVSELIGLLHEAIQEAKKTPPSTG 1399
BLAST of mRNA_E_fasciculatus_S2_contig8616.16739.1 vs.
Match: bromodomain (and WD repeat-containing protein 3 n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3HIY2_LINUN) HSP 1 Score: 55.5 bits (132), Expect = 1.580e-5 Identity = 31/89 (34.83%), Postives = 47/89 (52.81%), Query Frame = 1
Query: 127 QCTAALGSLERVLRQQRDVFVAFMDPVTDEIAPNYSMEIALPIHLGLIQQRLQRKYYRRAEGVFADLRLLETNCRTYNPAGSLIVDQCR 393
+C LE+++ + + F+ PV P Y M I P L I+ R++ +YRR + D+R +ETN RT+N GSLIV Q +
Sbjct: 1158 ECERIARGLEQIM--ELSIAEPFLAPVDLNKYPIYGMIIEYPTDLSTIKARVENHFYRRIAAIQFDIRYIETNARTFNQPGSLIVRQSK 1244
BLAST of mRNA_E_fasciculatus_S2_contig8616.16739.1 vs.
Match: Bromo (domain-containing protein n=1 Tax=Rodentolepis nana TaxID=102285 RepID=A0A0R3TUV5_RODNA) HSP 1 Score: 55.1 bits (131), Expect = 2.130e-5 Identity = 32/82 (39.02%), Postives = 46/82 (56.10%), Query Frame = 1
Query: 172 QRDVFVAFMDPVTDEIAPNYSMEIALPIHLGLIQQRLQ-RKYYRRAEGVFADLRLLETNCRTYNPAGSLIVDQCRSAMNMAE 414
+RD F+ PVT++IAPNY I+ P+ LG + +RL R +Y A DLRL+ N YNP ++ + RS + AE
Sbjct: 52 KRDHKGIFIQPVTEDIAPNYFSFISDPMDLGTMYKRLSSRNFYSTAGQYLDDLRLMCQNAMLYNPPDTIYYQKARSMLAFAE 133
BLAST of mRNA_E_fasciculatus_S2_contig8616.16739.1 vs.
Match: Wd (g-beta repeat-containing protein n=1 Tax=Cystoisospora suis TaxID=483139 RepID=A0A2C6LFI6_9APIC) HSP 1 Score: 55.1 bits (131), Expect = 2.180e-5 Identity = 34/78 (43.59%), Postives = 42/78 (53.85%), Query Frame = 1
Query: 181 VFVAFMDPV--------TDEIAP----NYSMEIALPIHLGLIQQRLQRKYYRRAEGVFADLRLLETNCRTYNPAGSLI 378
+F AF+DPV AP Y EIALPI L LI++RL YYRR + AD RLL +CR +NP G +
Sbjct: 1540 LFEAFIDPVPLIGNSRSARRSAPLWLQEYWKEIALPISLSLIRERLWYGYYRREAALHADFRLLLADCRQFNPPGDFL 1617
BLAST of mRNA_E_fasciculatus_S2_contig8616.16739.1 vs.
Match: IRF-2-binding (protein CELTIX-1, contains BROMO domain n=1 Tax=Phaffia rhodozyma TaxID=264483 RepID=A0A0F7SFD4_PHARH) HSP 1 Score: 54.7 bits (130), Expect = 2.760e-5 Identity = 26/76 (34.21%), Postives = 50/76 (65.79%), Query Frame = 1
Query: 154 ERVLRQ--QRDVFVAFMDPVTDEIAPNYSMEIALPIHLGLIQQRLQRKYYRRAEGVFADLRLLETNCRTYNPAGSL 375
ER+L++ +RD + F++PV+++ P Y I P+ L ++ ++L + +Y++ + ADLRL+ TNC T+NP ++
Sbjct: 401 ERLLKEIGRRDDYQFFLNPVSEKEVPGYHSIIKTPMSLSVMDRKLSQGFYQKFDLFEADLRLIFTNCITFNPPSTI 476
BLAST of mRNA_E_fasciculatus_S2_contig8616.16739.1 vs.
Match: Uncharacterized (protein n=2 Tax=Albugo candida TaxID=65357 RepID=A0A024GCR1_9STRA) HSP 1 Score: 54.3 bits (129), Expect = 3.930e-5 Identity = 30/71 (42.25%), Postives = 43/71 (60.56%), Query Frame = 1
Query: 193 FMDPVTDEIAPNYSMEIALPIHLGLIQQRLQRKYYRRAEGVFADLRLLETNCRTYNPAGSLIVDQCRSAMN 405
F+D V DE +Y + IA PI+L I++R++ YYR+AE + AD +LL +NC YN S I R+ N
Sbjct: 1685 FVDAV-DESFLDYLITIANPINLTQIRERIRLGYYRQAEALLADAKLLTSNCELYNVDSSTIAQNARTICN 1754 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8616.16739.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 22
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig8616.16739.1 >prot_E_fasciculatus_S2_contig8616.16739.1 ID=prot_E_fasciculatus_S2_contig8616.16739.1|Name=mRNA_E_fasciculatus_S2_contig8616.16739.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=198bp LSWPKHVLPLVKQRRLDSGLHEDPAAAWARQAGAERGLLSSEQCTAALGSback to top mRNA from alignment at E_fasciculatus_S2_contig8616:125..2311+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig8616.16739.1 ID=mRNA_E_fasciculatus_S2_contig8616.16739.1|Name=mRNA_E_fasciculatus_S2_contig8616.16739.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2187bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8616:125..2311+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8616:125..2311+ >mRNA_E_fasciculatus_S2_contig8616.16739.1 ID=mRNA_E_fasciculatus_S2_contig8616.16739.1|Name=mRNA_E_fasciculatus_S2_contig8616.16739.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=594bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8616:125..2311+ (Ectocarpus fasciculatus EfasUO2)back to top |