mRNA_E_fasciculatus_S2_contig8603.16730.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8603.16730.1
Unique NamemRNA_E_fasciculatus_S2_contig8603.16730.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8603.16730.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ75_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 3.190e-22
Identity = 48/57 (84.21%), Postives = 52/57 (91.23%), Query Frame = 3 
Query:  114 ADEARARKEAEKQAVLLASGDPDKYVDVRDERLCQKAAENGHLEVLQWARNNGCPWD 284
            ADEARAR+EAEKQAVLLASG+P  YVDV DE+LC+KAA  GHLEVLQWARNNGCPWD
Sbjct:    4 ADEARARREAEKQAVLLASGNPGWYVDVGDEQLCRKAASIGHLEVLQWARNNGCPWD 60
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BLAST of mRNA_E_fasciculatus_S2_contig8603.16730.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGA6_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 1.250e-19
Identity = 47/65 (72.31%), Postives = 52/65 (80.00%), Query Frame = 3 
Query:  108 AEADEARARKE---AEKQAVLLASGDPDKYVDVRDERLCQKAAENGHLEVLQWARNNGCPWDKST 293
            AEADEA AR E   AEKQAVLLASG P +YV V DE+LC++ A+ GHL VLQWARNNGCPWDK T
Sbjct:    8 AEADEASARIEEAAAEKQAVLLASGCPYRYVRVGDEQLCEETAKGGHLGVLQWARNNGCPWDKET 72
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BLAST of mRNA_E_fasciculatus_S2_contig8603.16730.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPZ5_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 1.950e-16
Identity = 40/60 (66.67%), Postives = 46/60 (76.67%), Query Frame = 3 
Query:  114 ADEARARKEAEKQAVLLASGDPDKYVDVRDERLCQKAAENGHLEVLQWARNNGCPWDKST 293
            A E  +R+EAEK AVLL SG PD YVDV DE+LC+KAA  GHLE LQW RNNG P D++T
Sbjct:   26 ACEVLSRREAEKYAVLLVSGHPDWYVDVGDEQLCEKAAWYGHLEALQWERNNGYPCDENT 85
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BLAST of mRNA_E_fasciculatus_S2_contig8603.16730.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGA5_ECTSI)

HSP 1 Score: 73.9 bits (180), Expect = 2.700e-12
Identity = 36/60 (60.00%), Postives = 44/60 (73.33%), Query Frame = 3 
Query:  114 ADEARARKE---AEKQAVLLASGDPDKYVDVRDERLCQKAAENGHLEVLQWARNNGCPWD 284
            AD+AR R+E   A+ +  LLASG PD Y+ V DE+LC KAA +GH+EVLQWAR   CPWD
Sbjct:   89 ADQARKRREEVAAKIEVFLLASGHPDWYMHVGDEQLCAKAANSGHIEVLQWARKQECPWD 148
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BLAST of mRNA_E_fasciculatus_S2_contig8603.16730.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS38_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 1.190e-10
Identity = 28/39 (71.79%), Postives = 33/39 (84.62%), Query Frame = 3 
Query:  177 PDKYVDVRDERLCQKAAENGHLEVLQWARNNGCPWDKST 293
            P +YV V DE+LC++AA+ GHL VLQWARNNGCPWDK T
Sbjct:   28 PHQYVRVGDEQLCEEAAKGGHLGVLQWARNNGCPWDKET 66
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BLAST of mRNA_E_fasciculatus_S2_contig8603.16730.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH40_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 7.780e-6
Identity = 23/32 (71.88%), Postives = 23/32 (71.88%), Query Frame = 3 
Query:  192 DVRDERLCQKAAENGHLEVLQWARNNGCPWDK 287
            D R E  C  AAE GHLEVLQWAR NGCPW K
Sbjct:   26 DSRGEDTCSAAAEGGHLEVLQWARANGCPWSK 57
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BLAST of mRNA_E_fasciculatus_S2_contig8603.16730.1 vs.
Match: Ankyrin (repeat-containing protein n=1 Tax=Cedratvirus kamchatka TaxID=2716914 RepID=A0A6G8MYC0_9VIRU)

HSP 1 Score: 52.8 bits (125), Expect = 4.550e-5
Identity = 20/30 (66.67%), Postives = 25/30 (83.33%), Query Frame = 3 
Query:  204 ERLCQKAAENGHLEVLQWARNNGCPWDKST 293
            E +C  AA+NGHLE+L+WAR NGCPW+K T
Sbjct:   84 EDVCTAAAKNGHLEILKWARANGCPWNKWT 113
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8603.16730.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
Uncharacterized3.190e-2284.21protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.250e-1972.31protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.950e-1666.67protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.700e-1260.00protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGA5... [more]
Uncharacterized1.190e-1071.79protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 131... [more]
Uncharacterized7.780e-671.88protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Ankyrin4.550e-566.67repeat-containing protein n=1 Tax=Cedratvirus kamc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8603contigE_fasciculatus_S2_contig8603:4967..6151 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size544
Hectar predicted targeting categoryother localisation
Exons3
Cds size342
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842518.8750963-UTR-E_fasciculatus_S2_contig8603:4966..50761696842518.8750963-UTR-E_fasciculatus_S2_contig8603:4966..5076Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8603 4967..5076 +
1696842518.8897555-UTR-E_fasciculatus_S2_contig8603:5410..54721696842518.8897555-UTR-E_fasciculatus_S2_contig8603:5410..5472Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8603 5411..5472 +
1696842518.8998044-UTR-E_fasciculatus_S2_contig8603:5780..58091696842518.8998044-UTR-E_fasciculatus_S2_contig8603:5780..5809Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8603 5781..5809 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842518.9137936-CDS-E_fasciculatus_S2_contig8603:5809..61511696842518.9137936-CDS-E_fasciculatus_S2_contig8603:5809..6151Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8603 5810..6151 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8603.16730.1prot_E_fasciculatus_S2_contig8603.16730.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8603 5810..6151 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8603.16730.1

>prot_E_fasciculatus_S2_contig8603.16730.1 ID=prot_E_fasciculatus_S2_contig8603.16730.1|Name=mRNA_E_fasciculatus_S2_contig8603.16730.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=114bp
MNDYARKQLRTGISRSFSGRETTGAPGTRVRAITRLTADILRSSNGRETT
DAPGTRPRAIKRLATDSSRSFSGRETTGAPGTRERAVWRLYTDILRSSNG
RETMGAPGIRTIAF
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mRNA from alignment at E_fasciculatus_S2_contig8603:4967..6151+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8603.16730.1 ID=mRNA_E_fasciculatus_S2_contig8603.16730.1|Name=mRNA_E_fasciculatus_S2_contig8603.16730.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1185bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8603:4967..6151+ (Ectocarpus fasciculatus EfasUO2)
GTCGGCGCAGCTTGCTGAAGCACAAACAGCGGTCATGGAGCTGAAAGCTG
ACCTTGCCCCTTTTCTTGCCAAGGAAGCGGTCGAAAGGGCAGCGGAAGCA
CAGAAGAGCGGTGAGTATATTTCCGCTGCCCCGCCTAGAGTCGCTGAACG
ACAGCAGTACTCGTTCACTCGAATCCCCATTCCCCCAAGCAAGGCATCGG
CCACTATCCAATCTGTATCACGATATCCTCAAGAACGTTGACCATCGCCC
ACGAGTCGGGGTAGTGGGTTGTCGAACGGACTGCCCAATGTGTAGCACAT
CTACTTCGGTTGTTTGGGACATGGCTATAGGCGGCCTTGTCGTGTCCCCG
TTCATTTCCATGCGTCGCTCTGAAAATAGTCAGGGTAGGTCGATGTTTCT
TCCTGACAAACCACCACATAATTAATTTCGCGTTGGCCCGCTAGGAGGCG
GACGAGGCGCGTGCACGGAAAGAGGCTGAGAAACAAGCAGTTCTACTCGC
ATCAGGGTAAGGCGGCGTCCTGAATGTCGCTCGTCCCTGTTTGTTTAATG
TTGGCTTTGCGGAGCAGGGCCGGGCTTTGTTGCTGTCGCATATCTATGGT
GCTTGAACCACATAGTCGCAGGTTGGAGGCCATCTCGCCGCATGAACGTT
TGGCCTGCGATCAGGCTATCTATGTATCTCAGCATAGCGTCAGTGTTCTC
GCTACGAGACGGCATGTCTTTTAGCTTTCGACGTGTGTGTCCCGTGTGCC
CGCCGGTGTTTCCGATCTTTTCTGACGAACGCTTTGCGTACCGCCGCTTG
TCTTCGAACCTTAGGGATCCGGACAAGTATGTCGATGTGAGAGATGAACG
ACTATGCCAGAAAGCAGCTGAGAACGGGCATCTCGAGGTCCTTCAGTGGG
CGAGAAACAACGGGTGCCCCTGGGACAAGAGTACGTGCTATTACGCGGCT
CACTGCGGACATCTTGAGGTCCTCCAATGGGCGAGAAACAACGGATGCCC
CTGGGACGAGACCACGTGCTATCAAGCGGCTGGCAACGGACAGCTCGAGG
TCCTTCAGTGGGCGAGAAACAACGGGTGCCCCTGGGACAAGGGAACGTGC
TGTTTGGCGGCTCTATACGGACATCTTGAGGTCCTCCAATGGGCGAGAAA
CAATGGGTGCCCCTGGGATAAGAACGATTGCCTTT
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8603:4967..6151+

>mRNA_E_fasciculatus_S2_contig8603.16730.1 ID=mRNA_E_fasciculatus_S2_contig8603.16730.1|Name=mRNA_E_fasciculatus_S2_contig8603.16730.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=342bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8603:4967..6151+ (Ectocarpus fasciculatus EfasUO2)
ATGAACGACTATGCCAGAAAGCAGCTGAGAACGGGCATCTCGAGGTCCTT
CAGTGGGCGAGAAACAACGGGTGCCCCTGGGACAAGAGTACGTGCTATTA
CGCGGCTCACTGCGGACATCTTGAGGTCCTCCAATGGGCGAGAAACAACG
GATGCCCCTGGGACGAGACCACGTGCTATCAAGCGGCTGGCAACGGACAG
CTCGAGGTCCTTCAGTGGGCGAGAAACAACGGGTGCCCCTGGGACAAGGG
AACGTGCTGTTTGGCGGCTCTATACGGACATCTTGAGGTCCTCCAATGGG
CGAGAAACAATGGGTGCCCCTGGGATAAGAACGATTGCCTTT
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