mRNA_E_fasciculatus_S2_contig860.16726.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig860.16726.1
Unique NamemRNA_E_fasciculatus_S2_contig860.16726.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig860.16726.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKD6_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 3.800e-22
Identity = 140/214 (65.42%), Postives = 142/214 (66.36%), Query Frame = 1 
Query:    4 GRPTGSVAGSSXXXXXXXXXXXXXXXXXXXXXXXXADRTAIPAGGSNGVAPPASYXXXXXXXXXX--VAPSGGEDATGIAVAATDRAPADSLPRSRSAAAAAGQDS----VPASQPTQQQQWAAVLHLDPSALSTPAPPLPAAAPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQLQLQRHMIYQQSLQQXALAQ 627
            GRPTGS     XXXXXXXXXXXXXXXXXXXXXXXX DR      GSNGVAP ASY            VA  GGE+ATGIAV A DR  ADSLP S+ AAA           PASQPT QQQWAAVLHL PSALSTPAPPLP  APA         XXXXXXXXXXX  XX XXXXXXX          XXX LQLQLQRHMIYQQSLQQ ALAQ
Sbjct: 3291 GRPTGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRXXXXXXGSNGVAP-ASYPAAAVSTATAASVAYGGGEEATGIAVTAADRTAADSLPLSQDAAAXXXXXXXRVPAPASQPTPQQQWAAVLHLPPSALSTPAPPLPPVAPATAPVPEDVPXXXXXXXXXXXSQXXAXXXXXXXAQQSWWVQQHXXX-LQLQLQRHMIYQQSLQQHALAQ 3502
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig860.16726.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized3.800e-2265.42protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig860contigE_fasciculatus_S2_contig860:23949..25155 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size642
Hectar predicted targeting categoryother localisation
Exons2
Cds size642
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842518.1591349-CDS-E_fasciculatus_S2_contig860:23948..242601696842518.1591349-CDS-E_fasciculatus_S2_contig860:23948..24260Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig860 23949..24260 -
1696842518.1777039-CDS-E_fasciculatus_S2_contig860:24825..251551696842518.1777039-CDS-E_fasciculatus_S2_contig860:24825..25155Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig860 24826..25155 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig860.16726.1prot_E_fasciculatus_S2_contig860.16726.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig860 23949..25155 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig860.16726.1

>prot_E_fasciculatus_S2_contig860.16726.1 ID=prot_E_fasciculatus_S2_contig860.16726.1|Name=mRNA_E_fasciculatus_S2_contig860.16726.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=214bp
AGRPTGSVAGSSGGSSLLTSSPPPPAGAAGGEQRRSADRTAIPAGGSNGV
APPASYPAAAVPAAAAVAPSGGEDATGIAVAATDRAPADSLPRSRSAAAA
AGQDSVPASQPTQQQQWAAVLHLDPSALSTPAPPLPAAAPAAALVPEDIP
PPPPPRPQRADAQPQPPAQQQQQTAQQSWWLQQHQQQLQLQLQRHMIYQQ
SLQQQALAQQQQQA
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mRNA from alignment at E_fasciculatus_S2_contig860:23949..25155-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig860.16726.1 ID=mRNA_E_fasciculatus_S2_contig860.16726.1|Name=mRNA_E_fasciculatus_S2_contig860.16726.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1207bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig860:23949..25155- (Ectocarpus fasciculatus EfasUO2)
GCTGGCAGACCGACCGGTTCGGTGGCGGGCAGCTCCGGTGGCTCTTCTTT
GCTGACCTCTTCTCCGCCCCCTCCCGCGGGAGCAGCGGGAGGAGAGCAGC
GGCGCTCTGCTGATCGCACGGCGATACCCGCCGGAGGGAGCAACGGAGTC
GCGCCCCCCGCCTCGTACCCCGCCGCAGCCGTCCCAGCAGCAGCAGCGGT
GGCGCCGAGCGGAGGTGAGGATGCTACGGGGATAGCGGTGGCCGCGACGG
ACCGGGCGCCGGCCGATTCCTTGCCACGTTCTCGAAGTGCGGCAGCAGCA
GCAGGCCAGGATTCTGTTCCAGCCAGCCAGGTTTGTACCCCGTCCGATGC
ATATGTTTCGCGTTCTCTGGGTTGGTGCCCTTGCTGGTTGGGAGGGGTGT
GTGGTTTGGCGGATCCGCACCAACAAAAACCCTTATGTTTGTTCCACCAA
GACCGAGAGAGAGTTCTTGCAGTGGGCTTGCGTTATGTGTGTTGCTTTCG
AAGCTACTGGTAGACTGGTTTGCAGTTGCGATCATGCGTGATTGAATTCA
TATTGGAGCGTCTTGTCCCTGTCAAGCGGATCGCAGGCGCTCGCCAGCGA
AGCTAGAATTTTTGGCTGTGGTGCGCCATCCCCGCTATCTGCTGGAAGGA
CCGGTTGATGCTCGCTCGAACCATTTCATCTCTCCTTCGCCCTCCACCCC
ATGACCCTCATTTGCTGCCTCACTTCGACGGGAAGCGCGCCTGATGCGGC
AAAGATGCCTGCGCGGCAAGTTTTTTTTGTCGGCTTGCCCTTCGCAAACG
TACGCTCCTCATTTCCCTTTTGACCTCCCACTCTTTATTTGTTTTGGCCG
CCCTGATGTATTTTGTTCTCTCGTGGCGCGAACCGACCGACACAGCCAAC
GCAGCAGCAGCAGTGGGCGGCCGTGTTGCATCTAGACCCGTCGGCGCTAT
CTACACCTGCGCCCCCGCTGCCGGCGGCGGCACCGGCAGCGGCACTTGTT
CCGGAAGACATTCCTCCTCCGCCACCCCCGCGGCCTCAGCGGGCCGATGC
CCAACCACAGCCACCTGCGCAGCAGCAGCAGCAGACGGCCCAGCAAAGCT
GGTGGCTCCAACAGCACCAGCAACAGCTCCAGCTCCAGCTGCAGCGGCAC
ATGATCTACCAGCAGAGCCTGCAGCAGCAGGCTCTGGCCCAGCAGCAGCA
ACAAGCT
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig860:23949..25155-

>mRNA_E_fasciculatus_S2_contig860.16726.1 ID=mRNA_E_fasciculatus_S2_contig860.16726.1|Name=mRNA_E_fasciculatus_S2_contig860.16726.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=642bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig860:23949..25155- (Ectocarpus fasciculatus EfasUO2)
GCTGGCAGACCGACCGGTTCGGTGGCGGGCAGCTCCGGTGGCTCTTCTTT
GCTGACCTCTTCTCCGCCCCCTCCCGCGGGAGCAGCGGGAGGAGAGCAGC
GGCGCTCTGCTGATCGCACGGCGATACCCGCCGGAGGGAGCAACGGAGTC
GCGCCCCCCGCCTCGTACCCCGCCGCAGCCGTCCCAGCAGCAGCAGCGGT
GGCGCCGAGCGGAGGTGAGGATGCTACGGGGATAGCGGTGGCCGCGACGG
ACCGGGCGCCGGCCGATTCCTTGCCACGTTCTCGAAGTGCGGCAGCAGCA
GCAGGCCAGGATTCTGTTCCAGCCAGCCAGCCAACGCAGCAGCAGCAGTG
GGCGGCCGTGTTGCATCTAGACCCGTCGGCGCTATCTACACCTGCGCCCC
CGCTGCCGGCGGCGGCACCGGCAGCGGCACTTGTTCCGGAAGACATTCCT
CCTCCGCCACCCCCGCGGCCTCAGCGGGCCGATGCCCAACCACAGCCACC
TGCGCAGCAGCAGCAGCAGACGGCCCAGCAAAGCTGGTGGCTCCAACAGC
ACCAGCAACAGCTCCAGCTCCAGCTGCAGCGGCACATGATCTACCAGCAG
AGCCTGCAGCAGCAGGCTCTGGCCCAGCAGCAGCAACAAGCT
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