mRNA_E_fasciculatus_S2_contig8598.16719.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8598.16719.1
Unique NamemRNA_E_fasciculatus_S2_contig8598.16719.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8598.16719.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1K8_ECTSI)

HSP 1 Score: 398 bits (1023), Expect = 1.570e-137
Identity = 240/275 (87.27%), Postives = 249/275 (90.55%), Query Frame = 1 
Query:    1 MRSDIATVVAFGLLSVCPISAAPTYSCFDPPDEGQTNPLGEGMEDVVESECCEALIDESDMMADREVIWDPVNCNHGPGEEPIAEAYLCRAHDTDGCRFCHDSCDGFEGLCITCDEVAEELLNSDSPTPSPDFETSDFPATAAPAIITAGTEAPFGIFPATPAPVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----------------APAPTAEASDCECFNSLSEEEMAVLTRRSKNMVCDPTCSDQSDLVWGELR 777
            MRSDIATV+AFGLLSVCP+SAAPTYSCFDPPDEGQTNPLGEGMEDVVESECCEALIDESDMMADREVIWDPVNCNHGPG+EPIAEAYLCRAHDTDGCRFCHDSCDG+EGLCITC+EV E+LLNSDSPTPSPDFETS+FPAT APAI+TA TEAPFGIFPATPAPVA  XX  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                APAPTAEASDCEC NSLSEEEMAVLTRRSKNMVCDPTCSDQSDLVWG + 
Sbjct:    1 MRSDIATVIAFGLLSVCPVSAAPTYSCFDPPDEGQTNPLGEGMEDVVESECCEALIDESDMMADREVIWDPVNCNHGPGDEPIAEAYLCRAHDTDGCRFCHDSCDGYEGLCITCEEVLEDLLNSDSPTPSPDFETSEFPATPAPAILTAATEAPFGIFPATPAPVAPVXXPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPAPTAEASDCECVNSLSEEEMAVLTRRSKNMVCDPTCSDQSDLVWGVMN 275
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8598.16719.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized1.570e-13787.27protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1K8... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8598contigE_fasciculatus_S2_contig8598:3906..6515 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size780
Hectar predicted targeting categorysignal peptide
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-07_001410.1
Cds size780
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842517.5773337-CDS-E_fasciculatus_S2_contig8598:3905..40811696842517.5773337-CDS-E_fasciculatus_S2_contig8598:3905..4081Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8598 3906..4081 +
1696842517.587838-CDS-E_fasciculatus_S2_contig8598:5535..56831696842517.587838-CDS-E_fasciculatus_S2_contig8598:5535..5683Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8598 5536..5683 +
1696842517.5986087-CDS-E_fasciculatus_S2_contig8598:6059..65151696842517.5986087-CDS-E_fasciculatus_S2_contig8598:6059..6515Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8598 6060..6515 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8598.16719.1prot_E_fasciculatus_S2_contig8598.16719.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8598 3906..6515 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8598.16719.1

>prot_E_fasciculatus_S2_contig8598.16719.1 ID=prot_E_fasciculatus_S2_contig8598.16719.1|Name=mRNA_E_fasciculatus_S2_contig8598.16719.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=260bp
MRSDIATVVAFGLLSVCPISAAPTYSCFDPPDEGQTNPLGEGMEDVVESE
CCEALIDESDMMADREVIWDPVNCNHGPGEEPIAEAYLCRAHDTDGCRFC
HDSCDGFEGLCITCDEVAEELLNSDSPTPSPDFETSDFPATAAPAIITAG
TEAPFGIFPATPAPVAPVSPPTEAPAAPPTEAPVAPATDAPVAPATDAPV
APATDAPVAAPAPTAEASDCECFNSLSEEEMAVLTRRSKNMVCDPTCSDQ
SDLVWGELR*
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mRNA from alignment at E_fasciculatus_S2_contig8598:3906..6515+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8598.16719.1 ID=mRNA_E_fasciculatus_S2_contig8598.16719.1|Name=mRNA_E_fasciculatus_S2_contig8598.16719.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2610bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8598:3906..6515+ (Ectocarpus fasciculatus EfasUO2)
ATGCGTTCCGACATCGCCACGGTCGTCGCCTTCGGGCTCCTCAGCGTTTG
CCCCATCAGCGCCGCGCCGACGTACTCGTGCTTCGACCCCCCGGACGAGG
GACAGACCAACCCTCTCGGGGAGGGCATGGAGGACGTCGTCGAGTCCGAG
TGCTGCGAGGCGCTCATCGACGAGAGGTGAGTAAGATTTGAGTGAGGAGT
AAGGCGGGAGCAGGTACAGCGTGGCTGCCGTGTGCGCCGTGGTAGTCAGT
AGCGCGTTTGCTCTGTTGCTTGCTTTGTTCTCCGGCGCCGCGGATCGTAT
CCTCCACAGATAGATACGATCCTTCATCCTTCATCCATACACAGAGCATG
CGCCACATGTTCCCGAGCCGACGCATTGTAAGATACGCACAATCATCCGC
AGTGTGCCTTGCTGCCTCCCAGTGCTGCTTGTGGCCGCGGCTTGTCGTGA
AAGCACTGCTCTGTTTCAGGTCATGGTTGCTTTTTCATGGGCTCGGCGAA
CGCAACAACACACCCGTTGTACGCGTGGTGCCTGACATGGAGATATACTG
TAGTGCAGTGTATCCGACCAATTGTTGTACAAATTACGTTACACAACGAC
ATCTTGATATTCTCGAAGCATCTATGCAGTCAATGAGACACACTGGTTAC
TAGGGACACACAGGCGCCACCAGCAGAAGCACACAGCGTATAGTCTAGAC
CATTTCTGGTTGCATAGGCCATGGGCTTGACTTGCTGCGAGCGGCACGCG
ACGATATTGTCTGCAAAGAAGTGTGTCCTGTTTTCGTTGTGCGTCATGTA
TGAACACGAATGCATGGCTTTCAAACACGCAAGACAACCACGTGTACAAC
GAACCCAATTCTGACGGGTGCCTTCGGGAATTACGCAAGTTCCGTGAATC
TCGAGAAGGAATGTCATGCCACCTACATGGCGAGCTACCACGTTCACCTA
CAGCGAAAGTGCCGAACATCATGAATGTTGCGCCCACGCCAAGAGCGATT
GTGACGGAATAGCCCAAGCTTCCCGTTTACAGTTTCGTCGGAGGATCACA
CTCTAAACGCCCACCGCGTACTAATTGTCCACTTTCCTGGGTTTCGCGAT
CCTCGTCTAGATAACCCAAAGCGTTTCCGCGTCCAGACTATTGCAGTAGT
ACACAACCAACGCCGCTCCTGCTGTGCGAGACACTGCCGCCGCGGCCGTT
CCGTAATCCCACCACCACAAATATTTTTCATTGGAACACCGATATTAGTT
GTTGTTGTTGTTGTTGTTGTTGTTGTTGCGGTGGAAAAGTTCGACAGTCT
GAGGCGCGACGCCCCTTCCCCGTCCCCGTTCCCGTTCGTGCTTCATCGAA
AGGACCAATGATCCTCGGCCTCGAGACTCGAAACCGGCCAGAGGCCGAGA
GGGCAGAAATAACATCCCCCTAAAAAGATCTGGAAGGAAGTCGGGGTGTT
TCAGTTCACTGCACACAGACTGCTATCCGGTGACGGTTGCACTGCTTCTC
CGCCATGTTTTAACTAGAAAACTGCGGTCCATACGGGTGCCTCCAACAAT
GTTCTCCCCGCCCCTGGGGACTCCTCTAACAACTTTTCCCCCGACCTCCC
TGTTATGCCATCGCCACCTGCAAATCTCAGCGACATGATGGCCGACCGCG
AGGTAATCTGGGACCCCGTGAACTGCAACCACGGGCCCGGCGAAGAGCCC
ATCGCGGAAGCGTACCTCTGCCGGGCGCACGACACCGACGGCTGCCGCTT
CTGCCACGACTCGTGCGACGGGTTTGAGGTGCGTCGTTCACGCCACAAGT
TTCGAGGTTTTTTGCCAACTATTCCTCTTGCTCGCTAAGCTCTGCGGCGT
AAGCGTTGTTCGCTAAGCATTGTTCGTGTCGAAGAATACTCGTGCGTCTG
CTGCTTAACACTGTAGTTTTCTTCCTTTGTTCTTCTCGATCTGTCAGTCT
TTGATTGGTAAGACTCAACCCCCGACTATTTTCGGTTGCGCAAACATTTT
GTTTCATCTGCCACTGTCCTTTTTGCGGTAAATGACATTTTGCTCAAACG
TCTTCTCGCGTGCGTGAATCTGACGATTCGGCCATGATACTCTTGCCCTG
TCCAAGAAACCTCAAACCAATCCCCACATGCTCCCTTCCCCCTCCCCAAA
CCAGGGCCTCTGCATCACCTGCGACGAGGTCGCGGAGGAGCTGCTGAACT
CGGACAGCCCCACCCCTTCCCCGGACTTCGAGACCTCCGACTTCCCGGCA
ACCGCGGCCCCGGCGATCATCACCGCCGGCACCGAGGCCCCCTTCGGCAT
CTTCCCCGCGACGCCCGCGCCGGTCGCCCCGGTGTCGCCGCCTACCGAAG
CGCCGGCGGCGCCGCCTACCGAAGCTCCCGTGGCGCCGGCCACCGACGCG
CCCGTTGCGCCGGCCACCGACGCGCCCGTTGCGCCCGCCACCGACGCGCC
CGTTGCCGCCCCCGCCCCGACCGCCGAGGCCTCGGACTGCGAGTGCTTCA
ACAGCCTGTCGGAGGAGGAGATGGCCGTGCTCACGCGACGGTCGAAGAAC
ATGGTGTGCGACCCGACCTGCTCGGACCAGTCCGACCTCGTCTGGGGTGA
GTTACGGTAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8598:3906..6515+

>mRNA_E_fasciculatus_S2_contig8598.16719.1 ID=mRNA_E_fasciculatus_S2_contig8598.16719.1|Name=mRNA_E_fasciculatus_S2_contig8598.16719.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=780bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8598:3906..6515+ (Ectocarpus fasciculatus EfasUO2)
ATGCGTTCCGACATCGCCACGGTCGTCGCCTTCGGGCTCCTCAGCGTTTG
CCCCATCAGCGCCGCGCCGACGTACTCGTGCTTCGACCCCCCGGACGAGG
GACAGACCAACCCTCTCGGGGAGGGCATGGAGGACGTCGTCGAGTCCGAG
TGCTGCGAGGCGCTCATCGACGAGAGCGACATGATGGCCGACCGCGAGGT
AATCTGGGACCCCGTGAACTGCAACCACGGGCCCGGCGAAGAGCCCATCG
CGGAAGCGTACCTCTGCCGGGCGCACGACACCGACGGCTGCCGCTTCTGC
CACGACTCGTGCGACGGGTTTGAGGGCCTCTGCATCACCTGCGACGAGGT
CGCGGAGGAGCTGCTGAACTCGGACAGCCCCACCCCTTCCCCGGACTTCG
AGACCTCCGACTTCCCGGCAACCGCGGCCCCGGCGATCATCACCGCCGGC
ACCGAGGCCCCCTTCGGCATCTTCCCCGCGACGCCCGCGCCGGTCGCCCC
GGTGTCGCCGCCTACCGAAGCGCCGGCGGCGCCGCCTACCGAAGCTCCCG
TGGCGCCGGCCACCGACGCGCCCGTTGCGCCGGCCACCGACGCGCCCGTT
GCGCCCGCCACCGACGCGCCCGTTGCCGCCCCCGCCCCGACCGCCGAGGC
CTCGGACTGCGAGTGCTTCAACAGCCTGTCGGAGGAGGAGATGGCCGTGC
TCACGCGACGGTCGAAGAACATGGTGTGCGACCCGACCTGCTCGGACCAG
TCCGACCTCGTCTGGGGTGAGTTACGGTAG
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