mRNA_E_fasciculatus_S2_contig8597.16718.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8597.16718.1
Unique NamemRNA_E_fasciculatus_S2_contig8597.16718.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8597.16718.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSG2_ECTSI)

HSP 1 Score: 225 bits (573), Expect = 5.290e-66
Identity = 107/113 (94.69%), Postives = 108/113 (95.58%), Query Frame = 1 
Query:    1 LRANRKQVRPIDAERHRRMHLDKCFSCFDVLERGRVPSGMVWGGLALLTGAPELSKVKFILGMYDADRDGMANETELRMAMTACATGFCRLHRVEPPPDGKIHSLTQEAFLHQ 339
            LR NRKQVRP DAERHRR HLDKCFSCFDVLERGRVPSGMVWGGLALLTGAPELSKVKFILGMYDADRDGM NETELRMAM+ACATGFCRLHRVEPPPDGKIHSL QEAFLHQ
Sbjct:   79 LRVNRKQVRPADAERHRRTHLDKCFSCFDVLERGRVPSGMVWGGLALLTGAPELSKVKFILGMYDADRDGMVNETELRMAMSACATGFCRLHRVEPPPDGKIHSLAQEAFLHQ 191
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8597.16718.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized5.290e-6694.69protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8597contigE_fasciculatus_S2_contig8597:5849..6393 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size340
Hectar predicted targeting categoryother localisation
Exons2
Cds size339
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842517.532533-CDS-E_fasciculatus_S2_contig8597:5848..60511696842517.532533-CDS-E_fasciculatus_S2_contig8597:5848..6051Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8597 5849..6051 +
1696842517.5467591-CDS-E_fasciculatus_S2_contig8597:6256..63921696842517.5467591-CDS-E_fasciculatus_S2_contig8597:6256..6392Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8597 6257..6392 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8597.16718.1prot_E_fasciculatus_S2_contig8597.16718.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8597 5849..6392 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8597.16718.1

>prot_E_fasciculatus_S2_contig8597.16718.1 ID=prot_E_fasciculatus_S2_contig8597.16718.1|Name=mRNA_E_fasciculatus_S2_contig8597.16718.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=113bp
LRANRKQVRPIDAERHRRMHLDKCFSCFDVLERGRVPSGMVWGGLALLTG
APELSKVKFILGMYDADRDGMANETELRMAMTACATGFCRLHRVEPPPDG
KIHSLTQEAFLHQ
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mRNA from alignment at E_fasciculatus_S2_contig8597:5849..6393+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8597.16718.1 ID=mRNA_E_fasciculatus_S2_contig8597.16718.1|Name=mRNA_E_fasciculatus_S2_contig8597.16718.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=545bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8597:5849..6393+ (Ectocarpus fasciculatus EfasUO2)
CTGCGTGCGAACCGCAAGCAGGTACGCCCAATCGACGCCGAACGCCACCG
AAGAATGCATCTAGACAAGTGCTTCTCGTGCTTCGACGTGCTGGAAAGGG
GCCGTGTGCCCTCGGGAATGGTGTGGGGAGGGCTCGCCCTCCTCACCGGG
GCTCCCGAGCTGAGCAAGGTCAAATTCATCTTGGGCATGTACGATGCCGA
CAGGTGCGAAAGAAACAGGGTTTCCTCTCTTCCATAAGGCAACGGCGGGT
AAACTCATTCTTTAGGGGGAGGCCACAAACACTGGACAAGATCCATCATC
ACCTGTGGCTGCTTTCTCATAAGATAATTCGGCCCTTTCCACAATGTTCG
TGTTTCGTGGCGAAAACCTCTGTTTTCACGCTTCAACCGACCAAACGTGA
CACGGCAGAGATGGGATGGCAAACGAGACCGAGCTCCGGATGGCCATGAC
TGCGTGCGCCACGGGTTTTTGTCGACTGCACAGAGTGGAACCCCCGCCAG
ATGGCAAAATTCATTCCCTAACCCAAGAAGCTTTCCTCCATCAGG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8597:5849..6393+

>mRNA_E_fasciculatus_S2_contig8597.16718.1 ID=mRNA_E_fasciculatus_S2_contig8597.16718.1|Name=mRNA_E_fasciculatus_S2_contig8597.16718.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=339bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8597:5849..6393+ (Ectocarpus fasciculatus EfasUO2)
CTGCGTGCGAACCGCAAGCAGGTACGCCCAATCGACGCCGAACGCCACCG
AAGAATGCATCTAGACAAGTGCTTCTCGTGCTTCGACGTGCTGGAAAGGG
GCCGTGTGCCCTCGGGAATGGTGTGGGGAGGGCTCGCCCTCCTCACCGGG
GCTCCCGAGCTGAGCAAGGTCAAATTCATCTTGGGCATGTACGATGCCGA
CAGAGATGGGATGGCAAACGAGACCGAGCTCCGGATGGCCATGACTGCGT
GCGCCACGGGTTTTTGTCGACTGCACAGAGTGGAACCCCCGCCAGATGGC
AAAATTCATTCCCTAACCCAAGAAGCTTTCCTCCATCAG
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